Result of FASTA (ccds) for pF1KB3668
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3668, 261 aa
  1>>>pF1KB3668 261 - 261 aa - 261 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3200+/-0.00113; mu= 1.5192+/- 0.067
 mean_var=212.1212+/-46.012, 0's: 0 Z-trim(109.9): 35  B-trim: 437 in 1/49
 Lambda= 0.088061
 statistics sampled from 11180 (11201) to 11180 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.344), width:  16
 Scan time:  2.160

The best scores are:                                      opt bits E(32554)
CCDS3567.1 RCHY1 gene_id:25898|Hs108|chr4          ( 261) 1932 257.8 5.5e-69
CCDS63992.1 RCHY1 gene_id:25898|Hs108|chr4         ( 239) 1720 230.8 6.6e-61
CCDS63991.1 RCHY1 gene_id:25898|Hs108|chr4         ( 221) 1410 191.4 4.5e-49
CCDS34012.1 RCHY1 gene_id:25898|Hs108|chr4         ( 252) 1285 175.6   3e-44
CCDS63990.1 RCHY1 gene_id:25898|Hs108|chr4         ( 212)  763 109.2 2.4e-24


>>CCDS3567.1 RCHY1 gene_id:25898|Hs108|chr4               (261 aa)
 initn: 1932 init1: 1932 opt: 1932  Z-score: 1352.0  bits: 257.8 E(32554): 5.5e-69
Smith-Waterman score: 1932; 99.6% identity (100.0% similar) in 261 aa overlap (1-261:1-261)

               10        20        30        40        50        60
pF1KB3 MAATAREDGASGQERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MAATAREDGASGQERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 QCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 KCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDFLCNDCNGRSTVQFHILGMKC
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS35 YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKC
              190       200       210       220       230       240

              250       260 
pF1KB3 KICESYNTAQAGGRRISLDQQ
       :::::::::::::::::::::
CCDS35 KICESYNTAQAGGRRISLDQQ
              250       260 

>>CCDS63992.1 RCHY1 gene_id:25898|Hs108|chr4              (239 aa)
 initn: 1720 init1: 1720 opt: 1720  Z-score: 1207.0  bits: 230.8 E(32554): 6.6e-61
Smith-Waterman score: 1720; 99.1% identity (100.0% similar) in 232 aa overlap (30-261:8-239)

               10        20        30        40        50        60
pF1KB3 MAATAREDGASGQERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEV
                                    .::::::::::::::::::::::::::::::
CCDS63                       MAPAVKSEAPCCDKLYTCRLCHDNNEDHQLDRFKVKEV
                                     10        20        30        

               70        80        90       100       110       120
pF1KB3 QCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 QCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCL
       40        50        60        70        80        90        

              130       140       150       160       170       180
pF1KB3 KCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG
      100       110       120       130       140       150        

              190       200       210       220       230       240
pF1KB3 YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDFLCNDCNGRSTVQFHILGMKC
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS63 YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKC
      160       170       180       190       200       210        

              250       260 
pF1KB3 KICESYNTAQAGGRRISLDQQ
       :::::::::::::::::::::
CCDS63 KICESYNTAQAGGRRISLDQQ
      220       230         

>>CCDS63991.1 RCHY1 gene_id:25898|Hs108|chr4              (221 aa)
 initn: 1410 init1: 1410 opt: 1410  Z-score: 994.6  bits: 191.4 E(32554): 4.5e-49
Smith-Waterman score: 1533; 84.3% identity (84.7% similar) in 261 aa overlap (1-261:1-221)

               10        20        30        40        50        60
pF1KB3 MAATAREDGASGQERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEV
       :::::::::::::::::::::::::::::::                             
CCDS63 MAATAREDGASGQERGQRGCEHYDRGCLLKA-----------------------------
               10        20        30                              

               70        80        90       100       110       120
pF1KB3 QCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCL
                  :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 -----------QQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCL
                         40        50        60        70        80

              130       140       150       160       170       180
pF1KB3 KCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG
               90       100       110       120       130       140

              190       200       210       220       230       240
pF1KB3 YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDFLCNDCNGRSTVQFHILGMKC
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS63 YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKC
              150       160       170       180       190       200

              250       260 
pF1KB3 KICESYNTAQAGGRRISLDQQ
       :::::::::::::::::::::
CCDS63 KICESYNTAQAGGRRISLDQQ
              210       220 

>>CCDS34012.1 RCHY1 gene_id:25898|Hs108|chr4              (252 aa)
 initn: 1285 init1: 1285 opt: 1285  Z-score: 908.0  bits: 175.6 E(32554): 3e-44
Smith-Waterman score: 1842; 96.2% identity (96.6% similar) in 261 aa overlap (1-261:1-252)

               10        20        30        40        50        60
pF1KB3 MAATAREDGASGQERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MAATAREDGASGQERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 KCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::         :
CCDS34 KCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHR---------G
              130       140       150       160       170          

              190       200       210       220       230       240
pF1KB3 YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDFLCNDCNGRSTVQFHILGMKC
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS34 YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKC
             180       190       200       210       220       230 

              250       260 
pF1KB3 KICESYNTAQAGGRRISLDQQ
       :::::::::::::::::::::
CCDS34 KICESYNTAQAGGRRISLDQQ
             240       250  

>>CCDS63990.1 RCHY1 gene_id:25898|Hs108|chr4              (212 aa)
 initn: 849 init1: 763 opt: 763  Z-score: 550.6  bits: 109.2 E(32554): 2.4e-24
Smith-Waterman score: 1443; 80.8% identity (81.2% similar) in 261 aa overlap (1-261:1-212)

               10        20        30        40        50        60
pF1KB3 MAATAREDGASGQERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEV
       :::::::::::::::::::::::::::::::                             
CCDS63 MAATAREDGASGQERGQRGCEHYDRGCLLKA-----------------------------
               10        20        30                              

               70        80        90       100       110       120
pF1KB3 QCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCL
                  :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 -----------QQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCL
                         40        50        60        70        80

              130       140       150       160       170       180
pF1KB3 KCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::         :
CCDS63 KCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHR---------G
               90       100       110       120       130          

              190       200       210       220       230       240
pF1KB3 YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDFLCNDCNGRSTVQFHILGMKC
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS63 YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKC
             140       150       160       170       180       190 

              250       260 
pF1KB3 KICESYNTAQAGGRRISLDQQ
       :::::::::::::::::::::
CCDS63 KICESYNTAQAGGRRISLDQQ
             200       210  




261 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:58:04 2016 done: Fri Nov  4 20:58:05 2016
 Total Scan time:  2.160 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com