hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/smart.HMMs.bin Sequence file: /tmp/20090424/iprscan-20090424-20545115/chunk_1/iprscan-20090424-20545115.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KB9466 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00399 134.9 8.7e-36 1 SM00430 124.1 1.6e-32 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00399 1/1 418 489 .. 1 72 [] 134.9 8.7e-36 SM00430 1/1 565 729 .. 1 158 [] 124.1 1.6e-32 Alignments of top-scoring domains: SM00399: domain 1 of 1, from 418 to 489: score 134.9, E = 8.7e-36 *->sepCaVCgdpAsGyHfGvlsCrACkaFFRRtvvlkkkYkCkknnnCe +++C+VC+d AsG+H+Gvl+C +Ck FF+R+v +++Y C + n+C pF1KB9466 418 PKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCI 464 idkkgRnrCRaCRlkKClevGMnpe<-* idk +R++C aCR++KCl++GMn e pF1KB9466 465 IDKIRRKNCPACRYRKCLQAGMNLE 489 SM00430: domain 1 of 1, from 565 to 729: score 124.1, E = 1.6e-32 *->ewwerdllltvewaksfpfFreLsleDqiiLLksfwfelllLesayr +++ r++ ++v+wak +p+Fr+L+l+Dq++LL+++w+ l+ + +++r pF1KB9466 565 MLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWR 611 sa.lkk.sdlllfpdgtyirpd...lf.pfldrildelv.plreLkltde s+++ l+++pd++++ + + + + ++++ +++ l++L+++ e pF1KB9466 612 SYrQSSaNLLCFAPDLIINEQRmtlPCmYDQCKHMLYVSsELHRLQVSYE 661 EyalLkaillfnp.agpglseegqeiveklqeklsnaLhdYylknypm.p Ey+++k +ll+++ gl + qe+ ++++ ++++L + ++k+ ++++ pF1KB9466 662 EYLCMKTLLLLSSvPKDGLKS--QELFDEIRMTYIKELGKAIVKREGNsS 709 nypsRfakLllllpslrkis<-* + +Rf +L++ll+s++ ++ pF1KB9466 710 QNWQRFYQLTKLLDSMHEVV 729 //