hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/Pfam.bin Sequence file: /tmp/20090424/iprscan-20090424-20545115/chunk_1/iprscan-20090424-20545115.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KB9466 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02155.6.ls Glucocorticoid receptor 1056.2 0 1 PF02155.6.fs Glucocorticoid receptor 1054.2 0 1 PF00105.9.fs Zinc finger, C4 type (two domains) 161.5 7.7e-48 1 PF00104.20.fs Ligand-binding domain of nuclear hormon 159.5 2.1e-47 1 PF00105.9.ls Zinc finger, C4 type (two domains) 163.5 4.9e-46 1 PF00104.20.ls Ligand-binding domain of nuclear hormon 161.4 2.1e-45 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02155.6.fs 1/1 26 401 .. 1 386 [] 1054.2 0 PF02155.6.ls 1/1 26 401 .. 1 386 [] 1056.2 0 PF00105.9.fs 1/1 419 494 .. 1 77 [] 161.5 7.7e-48 PF00105.9.ls 1/1 419 494 .. 1 77 [] 163.5 4.9e-46 PF00104.20.fs 1/1 568 756 .. 1 198 [] 159.5 2.1e-47 PF00104.20.ls 1/1 568 756 .. 1 198 [] 161.4 2.1e-45 Alignments of top-scoring domains: PF02155.6.fs: domain 1 of 1, from 26 to 401: score 1054.2, E = 0 *->VidFfkilRGGvslkVSvSstslaaASQSdskQQqHFqKqLrllvDf V+dF+k lRGG+++kVS+Ss+sla ASQSdskQ rllvDf pF1KB9466 26 VMDFYKTLRGGATVKVSASSPSLAVASQSDSKQR-------RLLVDF 65 tkGlvsNvqQPDLSKAVSLSMGLYMGEsdTKVMssDlaFPsQeQIslSsG +kG+vsN+qQPDLSKAVSLSMGLYMGE++TKVM++Dl+FP+Q+QIslSsG pF1KB9466 66 PKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSG 115 ETDlsLLEESIANLnakslvPdklkeiaessvsAdPKEKeffKtdsDvSa ETDl LLEESIANLn++++vP+++k++a+ +vsA+P EKef+Kt+sDvS+ pF1KB9466 116 ETDLKLLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSS 165 eqrnlkGQtGsNGsssvkLytkDQsTFDlLrDLeiSsdSPGkdtkssPWk eq+ lkGQtG+NG ++vkLyt DQsTFD+L+DLe+Ss+SPGk+t+ sPW+ pF1KB9466 166 EQQHLKGQTGTNG-GNVKLYTTDQSTFDILQDLEFSSGSPGKETNESPWR 214 ddLlideeaFnLLSPLateddfFlkeevlsEdsKtLiLeDtkqklkDnad +dLlide++ LLSPLa+edd+Fl+e++++Ed+K+LiL+Dtk+k+kDn+d pF1KB9466 215 SDLLIDENC--LLSPLAGEDDSFLLEGNSNEDCKPLILPDTKPKIKDNGD 262 lvLlsSadvtlsQVKTEKEDyIELCTPGVvkeEKlstVYCvasFsGanli lvL+s ++vtl+QVKTEKED+IELCTPGV+k+EKl+tVYC+asF+Gan+i pF1KB9466 263 LVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTVYCQASFPGANII 312 GNKsSAISvHGVSTSGGQMYHYDlNTAslSQQqDvKPvFNlisPitviaE GNK+SAISvHGVSTSGGQMYHYD+NTAslSQQqD+KP+FN+i+Pi+v++E pF1KB9466 313 GNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVGSE 362 nWNRCqGSGdDtlaSlGtlNFPnRsVFSNGYSSPsiRsD<-* nWNRCqGSGdD+l+SlGtlNFP+R+VFSNGYSSPs+R+D pF1KB9466 363 NWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPD 401 PF02155.6.ls: domain 1 of 1, from 26 to 401: score 1056.2, E = 0 *->VidFfkilRGGvslkVSvSstslaaASQSdskQQqHFqKqLrllvDf V+dF+k lRGG+++kVS+Ss+sla ASQSdskQ rllvDf pF1KB9466 26 VMDFYKTLRGGATVKVSASSPSLAVASQSDSKQR-------RLLVDF 65 tkGlvsNvqQPDLSKAVSLSMGLYMGEsdTKVMssDlaFPsQeQIslSsG +kG+vsN+qQPDLSKAVSLSMGLYMGE++TKVM++Dl+FP+Q+QIslSsG pF1KB9466 66 PKGSVSNAQQPDLSKAVSLSMGLYMGETETKVMGNDLGFPQQGQISLSSG 115 ETDlsLLEESIANLnakslvPdklkeiaessvsAdPKEKeffKtdsDvSa ETDl LLEESIANLn++++vP+++k++a+ +vsA+P EKef+Kt+sDvS+ pF1KB9466 116 ETDLKLLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDVSS 165 eqrnlkGQtGsNGsssvkLytkDQsTFDlLrDLeiSsdSPGkdtkssPWk eq+ lkGQtG+NG ++vkLyt DQsTFD+L+DLe+Ss+SPGk+t+ sPW+ pF1KB9466 166 EQQHLKGQTGTNG-GNVKLYTTDQSTFDILQDLEFSSGSPGKETNESPWR 214 ddLlideeaFnLLSPLateddfFlkeevlsEdsKtLiLeDtkqklkDnad +dLlide++ LLSPLa+edd+Fl+e++++Ed+K+LiL+Dtk+k+kDn+d pF1KB9466 215 SDLLIDENC--LLSPLAGEDDSFLLEGNSNEDCKPLILPDTKPKIKDNGD 262 lvLlsSadvtlsQVKTEKEDyIELCTPGVvkeEKlstVYCvasFsGanli lvL+s ++vtl+QVKTEKED+IELCTPGV+k+EKl+tVYC+asF+Gan+i pF1KB9466 263 LVLSSPSNVTLPQVKTEKEDFIELCTPGVIKQEKLGTVYCQASFPGANII 312 GNKsSAISvHGVSTSGGQMYHYDlNTAslSQQqDvKPvFNlisPitviaE GNK+SAISvHGVSTSGGQMYHYD+NTAslSQQqD+KP+FN+i+Pi+v++E pF1KB9466 313 GNKMSAISVHGVSTSGGQMYHYDMNTASLSQQQDQKPIFNVIPPIPVGSE 362 nWNRCqGSGdDtlaSlGtlNFPnRsVFSNGYSSPsiRsD<-* nWNRCqGSGdD+l+SlGtlNFP+R+VFSNGYSSPs+R+D pF1KB9466 363 NWNRCQGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPD 401 PF00105.9.fs: domain 1 of 1, from 419 to 494: score 161.5, E = 7.7e-48 *->elCkVCGDkASGyHYGvlTCEGCKGFFrRSiqknlviYsCkrnkdCv +lC+VC+D+ASG+HYGvlTC++CK+FF+R+++++++ Y C++++dC+ pF1KB9466 419 KLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHN-YLCAGRNDCI 464 IdKrnRnrCQyCRLkKCLeVGMskeaVrfg<-* IdK++R++C++CR++KCL++GM++ea++++ pF1KB9466 465 IDKIRRKNCPACRYRKCLQAGMNLEARKTK 494 PF00105.9.ls: domain 1 of 1, from 419 to 494: score 163.5, E = 4.9e-46 *->elCkVCGDkASGyHYGvlTCEGCKGFFrRSiqknlviYsCkrnkdCv +lC+VC+D+ASG+HYGvlTC++CK+FF+R+++++++ Y C++++dC+ pF1KB9466 419 KLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHN-YLCAGRNDCI 464 IdKrnRnrCQyCRLkKCLeVGMskeaVrfg<-* IdK++R++C++CR++KCL++GM++ea++++ pF1KB9466 465 IDKIRRKNCPACRYRKCLQAGMNLEARKTK 494 PF00104.20.fs: domain 1 of 1, from 568 to 756: score 159.5, E = 2.1e-47 *->drelllivewaKklPgFseLsleDQiiLLksswlelllLrlayrsyk r++ +v+waK +PgF++L+l+DQ++LL++sw+ l+ ++l++rsy pF1KB9466 568 GRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYR 614 ek.elllfpdggdif.eeqlr.ggl.elvrilqelv.plreLkldeeEya + ++ ll++ ++i++e+++ + + +++++ +++ l++L+++ eEy+ pF1KB9466 615 QSsANLLCFAPDLIInEQRMTlPCMyDQCKHMLYVSsELHRLQVSYEEYL 664 lLkAivLfnpdvpglSlkgreiveklqekylsaLleYclltygkepgspq ++k+++L+++ ++++ lk++e+ +++++ y+++L + + ++ +s+q pF1KB9466 665 CMKTLLLLSSVPKDG-LKSQELFDEIRMTYIKELGKAIVKRE---GNSSQ 710 .dprgpsRFakLLllLpelrslsksklieflfflklfgpvlfpiklppLl +++ RF +L lL ++++++ ++l++++f + l +i++p +l pF1KB9466 711 nWQ----RFYQLTKLLDSMHEVV-ENLLNYCFQTFLDKTM--SIEFPEML 753 dvLfkEi<-* Ei pF1KB9466 754 ----AEI 756 PF00104.20.ls: domain 1 of 1, from 568 to 756: score 161.4, E = 2.1e-45 *->drelllivewaKklPgFseLsleDQiiLLksswlelllLrlayrsyk r++ +v+waK +PgF++L+l+DQ++LL++sw+ l+ ++l++rsy pF1KB9466 568 GRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYR 614 ek.elllfpdggdif.eeqlr.ggl.elvrilqelv.plreLkldeeEya + ++ ll++ ++i++e+++ + + +++++ +++ l++L+++ eEy+ pF1KB9466 615 QSsANLLCFAPDLIInEQRMTlPCMyDQCKHMLYVSsELHRLQVSYEEYL 664 lLkAivLfnpdvpglSlkgreiveklqekylsaLleYclltygkepgspq ++k+++L+++ ++++ lk++e+ +++++ y+++L + + ++ +s+q pF1KB9466 665 CMKTLLLLSSVPKDG-LKSQELFDEIRMTYIKELGKAIVKRE---GNSSQ 710 .dprgpsRFakLLllLpelrslsksklieflfflklfgpvlfpiklppLl +++ RF +L lL ++++++ ++l++++f + l +i++p +l pF1KB9466 711 nWQ----RFYQLTKLLDSMHEVV-ENLLNYCFQTFLDKTM--SIEFPEML 753 dvLfkEi<-* Ei pF1KB9466 754 ----AEI 756 //