FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2364, 235 aa
  1>>>pF1KE2364 235 - 235 aa - 235 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7543+/-0.000304; mu= 4.3393+/- 0.019
 mean_var=149.0936+/-30.586, 0's: 0 Z-trim(122.2): 7  B-trim: 1715 in 1/58
 Lambda= 0.105038
 statistics sampled from 39910 (39917) to 39910 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.468), width:  16
 Scan time:  7.360

The best scores are:                                      opt bits E(85289)
NP_001139345 (OMIM: 186910,608957) T-cell surface  ( 235) 1600 253.1 3.1e-67
NP_001759 (OMIM: 186910,608957) T-cell surface gly ( 235) 1600 253.1 3.1e-67
NP_741969 (OMIM: 186910,608957) T-cell surface gly ( 198) 1149 184.7   1e-46


>>NP_001139345 (OMIM: 186910,608957) T-cell surface glyc  (235 aa)
 initn: 1600 init1: 1600 opt: 1600  Z-score: 1328.1  bits: 253.1 E(85289): 3.1e-67
Smith-Waterman score: 1600; 99.6% identity (99.6% similar) in 235 aa overlap (1-235:1-235)

               10        20        30        40        50        60
pF1KE2 MALPVTALLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MALPVTALLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 RGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGCYFCSALSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
NP_001 RGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALSN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SIMYFSHFVPVFLPAKPTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIMYFSHFVPVFLPAKPTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFA
              130       140       150       160       170       180

              190       200       210       220       230     
pF1KE2 CDIYIWAPLAGTCGVLLLSLVITLYCNHRNRRRVCKCPRPVVKSGDKPSLSARYV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CDIYIWAPLAGTCGVLLLSLVITLYCNHRNRRRVCKCPRPVVKSGDKPSLSARYV
              190       200       210       220       230     

>>NP_001759 (OMIM: 186910,608957) T-cell surface glycopr  (235 aa)
 initn: 1600 init1: 1600 opt: 1600  Z-score: 1328.1  bits: 253.1 E(85289): 3.1e-67
Smith-Waterman score: 1600; 99.6% identity (99.6% similar) in 235 aa overlap (1-235:1-235)

               10        20        30        40        50        60
pF1KE2 MALPVTALLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MALPVTALLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 RGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGCYFCSALSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
NP_001 RGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALSN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SIMYFSHFVPVFLPAKPTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SIMYFSHFVPVFLPAKPTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFA
              130       140       150       160       170       180

              190       200       210       220       230     
pF1KE2 CDIYIWAPLAGTCGVLLLSLVITLYCNHRNRRRVCKCPRPVVKSGDKPSLSARYV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CDIYIWAPLAGTCGVLLLSLVITLYCNHRNRRRVCKCPRPVVKSGDKPSLSARYV
              190       200       210       220       230     

>>NP_741969 (OMIM: 186910,608957) T-cell surface glycopr  (198 aa)
 initn: 1181 init1: 1149 opt: 1149  Z-score: 959.8  bits: 184.7 E(85289): 1e-46
Smith-Waterman score: 1245; 83.8% identity (83.8% similar) in 235 aa overlap (1-235:1-198)

               10        20        30        40        50        60
pF1KE2 MALPVTALLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_741 MALPVTALLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 RGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGCYFCSALSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
NP_741 RGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALSN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SIMYFSHFVPVFLPAKPTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFA
       :::::::::::::::::::::::::::::::::::::::::::::::::::    :    
NP_741 SIMYFSHFVPVFLPAKPTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGA----G----
              130       140       150       160       170          

              190       200       210       220       230     
pF1KE2 CDIYIWAPLAGTCGVLLLSLVITLYCNHRNRRRVCKCPRPVVKSGDKPSLSARYV
                                    ::::::::::::::::::::::::::
NP_741 -----------------------------NRRRVCKCPRPVVKSGDKPSLSARYV
                                         180       190        




235 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:38:00 2016 done: Sun Nov  6 22:38:01 2016
 Total Scan time:  7.360 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]