Result of FASTA (omim) for pF1KB0401
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0401, 171 aa
  1>>>pF1KB0401 171 - 171 aa - 171 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8617+/-0.000407; mu= 16.0864+/- 0.025
 mean_var=90.3794+/-17.919, 0's: 0 Z-trim(113.3): 136  B-trim: 30 in 1/54
 Lambda= 0.134909
 statistics sampled from 22416 (22567) to 22416 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.654), E-opt: 0.2 (0.265), width:  16
 Scan time:  5.230

The best scores are:                                      opt bits E(85289)
NP_001138416 (OMIM: 609211) myosin regulatory ligh ( 172) 1108 225.2 3.9e-59
NP_001138417 (OMIM: 609211) myosin regulatory ligh ( 172) 1108 225.2 3.9e-59
NP_291024 (OMIM: 609211) myosin regulatory light c ( 172) 1108 225.2 3.9e-59
NP_006088 (OMIM: 609905) myosin regulatory light p ( 172) 1072 218.2   5e-57
NP_000423 (OMIM: 160781,608758) myosin regulatory  ( 166)  634 133.0 2.3e-31
XP_016863734 (OMIM: 160782) PREDICTED: myosin ligh ( 173)  615 129.3   3e-30
NP_002468 (OMIM: 160782) myosin light chain 5 [Hom ( 173)  615 129.3   3e-30
XP_016863735 (OMIM: 160782) PREDICTED: myosin ligh ( 173)  615 129.3   3e-30
XP_006713949 (OMIM: 160782) PREDICTED: myosin ligh ( 328)  608 128.2 1.2e-29
NP_067046 (OMIM: 613993) myosin regulatory light c ( 175)  559 118.4 5.8e-27
XP_011513766 (OMIM: 613993) PREDICTED: myosin regu ( 208)  492 105.4 5.5e-23
XP_016863737 (OMIM: 160782) PREDICTED: myosin ligh ( 132)  468 100.5   1e-21
XP_016863736 (OMIM: 160782) PREDICTED: myosin ligh ( 132)  468 100.5   1e-21
XP_016867967 (OMIM: 613993) PREDICTED: myosin regu ( 132)  444 95.9 2.6e-20
XP_011513767 (OMIM: 613993) PREDICTED: myosin regu ( 163)  444 96.0   3e-20
NP_001316851 (OMIM: 114183) calmodulin isoform 1 [ ( 149)  401 87.6 9.5e-18
NP_008819 (OMIM: 114180,614916,616247) calmodulin  ( 149)  401 87.6 9.5e-18
NP_005175 (OMIM: 114183) calmodulin isoform 1 [Hom ( 149)  401 87.6 9.5e-18
NP_001734 (OMIM: 114182,616249) calmodulin isoform ( 149)  401 87.6 9.5e-18
XP_006720321 (OMIM: 114180,614916,616247) PREDICTE ( 150)  400 87.4 1.1e-17
NP_001292553 (OMIM: 114182,616249) calmodulin isof ( 197)  400 87.5 1.3e-17
NP_005176 (OMIM: 114184) calmodulin-like protein 3 ( 149)  378 83.1 2.1e-16
XP_011513765 (OMIM: 613993) PREDICTED: myosin regu ( 231)  365 80.8 1.6e-15
NP_852667 (OMIM: 609905) myosin regulatory light p ( 118)  360 79.5 2.1e-15
XP_016867968 (OMIM: 613993) PREDICTED: myosin regu (  99)  320 71.6   4e-13
XP_005249874 (OMIM: 613993) PREDICTED: myosin regu ( 155)  317 71.2 8.1e-13
NP_001316850 (OMIM: 114183) calmodulin isoform 2 [ ( 113)  313 70.3 1.1e-12
NP_001316852 (OMIM: 114183) calmodulin isoform 2 [ ( 113)  313 70.3 1.1e-12
NP_001292554 (OMIM: 114182,616249) calmodulin isof ( 113)  313 70.3 1.1e-12
NP_001292555 (OMIM: 114182,616249) calmodulin isof ( 113)  313 70.3 1.1e-12
NP_001316855 (OMIM: 114183) calmodulin isoform 2 [ ( 113)  313 70.3 1.1e-12
NP_001316854 (OMIM: 114183) calmodulin isoform 2 [ ( 113)  313 70.3 1.1e-12
NP_001316853 (OMIM: 114183) calmodulin isoform 2 [ ( 113)  313 70.3 1.1e-12
NP_004335 (OMIM: 300006) centrin-2 [Homo sapiens]  ( 172)  291 66.2 2.9e-11
NP_004057 (OMIM: 603187) centrin-1 [Homo sapiens]  ( 172)  282 64.5 9.8e-11
NP_059118 (OMIM: 605183) calmodulin-like protein 5 ( 146)  251 58.4 5.7e-09
NP_003270 (OMIM: 191039) troponin C, skeletal musc ( 160)  248 57.8 9.1e-09
XP_011527333 (OMIM: 191039) PREDICTED: troponin C, ( 145)  245 57.2 1.3e-08
NP_002466 (OMIM: 609930) myosin light chain 6B [Ho ( 208)  246 57.6 1.4e-08
NP_001186558 (OMIM: 609930) myosin light chain 6B  ( 208)  246 57.6 1.4e-08
NP_057450 (OMIM: 607314,614899) calcium-binding pr ( 220)  238 56.0 4.3e-08
NP_003271 (OMIM: 191040,611879,613243) troponin C, ( 161)  235 55.3 5.3e-08
NP_524147 (OMIM: 609931) myosin light polypeptide  ( 151)  233 54.9 6.7e-08
NP_001305425 (OMIM: 607314,614899) calcium-binding ( 226)  229 54.3 1.5e-07
NP_066299 (OMIM: 609931) myosin light polypeptide  ( 151)  226 53.5 1.7e-07
NP_004356 (OMIM: 602907) centrin-3 isoform 2 [Homo ( 167)  222 52.8 3.1e-07
NP_524146 (OMIM: 160780) myosin light chain 1/3, s ( 150)  215 51.4 7.5e-07
NP_619650 (OMIM: 610171) calmodulin-like protein 6 ( 181)  215 51.5 8.5e-07
XP_005244786 (OMIM: 610171) PREDICTED: calmodulin- ( 203)  215 51.5 9.2e-07
NP_524144 (OMIM: 160780) myosin light chain 1/3, s ( 194)  211 50.7 1.5e-06


>>NP_001138416 (OMIM: 609211) myosin regulatory light ch  (172 aa)
 initn: 1077 init1: 1077 opt: 1108  Z-score: 1182.6  bits: 225.2 E(85289): 3.9e-59
Smith-Waterman score: 1108; 97.7% identity (98.8% similar) in 172 aa overlap (1-171:1-172)

               10         20        30        40        50         
pF1KB0 MSSKRTKTKT-KKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS
       ::::..:::: :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSKKAKTKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB0 LGKNPTDEYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQE
       ::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGKNPTDAYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQE
               70        80        90       100       110       120

     120       130       140       150       160       170 
pF1KB0 DYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
              130       140       150       160       170  

>>NP_001138417 (OMIM: 609211) myosin regulatory light ch  (172 aa)
 initn: 1077 init1: 1077 opt: 1108  Z-score: 1182.6  bits: 225.2 E(85289): 3.9e-59
Smith-Waterman score: 1108; 97.7% identity (98.8% similar) in 172 aa overlap (1-171:1-172)

               10         20        30        40        50         
pF1KB0 MSSKRTKTKT-KKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS
       ::::..:::: :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSKKAKTKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB0 LGKNPTDEYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQE
       ::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGKNPTDAYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQE
               70        80        90       100       110       120

     120       130       140       150       160       170 
pF1KB0 DYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
              130       140       150       160       170  

>>NP_291024 (OMIM: 609211) myosin regulatory light chain  (172 aa)
 initn: 1077 init1: 1077 opt: 1108  Z-score: 1182.6  bits: 225.2 E(85289): 3.9e-59
Smith-Waterman score: 1108; 97.7% identity (98.8% similar) in 172 aa overlap (1-171:1-172)

               10         20        30        40        50         
pF1KB0 MSSKRTKTKT-KKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS
       ::::..:::: :::::::::::::::::::::::::::::::::::::::::::::::::
NP_291 MSSKKAKTKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB0 LGKNPTDEYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQE
       ::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_291 LGKNPTDAYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQE
               70        80        90       100       110       120

     120       130       140       150       160       170 
pF1KB0 DYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_291 DYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
              130       140       150       160       170  

>>NP_006088 (OMIM: 609905) myosin regulatory light polyp  (172 aa)
 initn: 1042 init1: 1042 opt: 1072  Z-score: 1144.7  bits: 218.2 E(85289): 5e-57
Smith-Waterman score: 1072; 93.0% identity (98.8% similar) in 172 aa overlap (1-171:1-172)

               10         20        30        40        50         
pF1KB0 MSSKRTKTKT-KKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS
       :::::.:.:: :::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MSSKRAKAKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB0 LGKNPTDEYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQE
       ::::::::::..::.:::::::::::::::::::::::::::::::::::::::.: :.:
NP_006 LGKNPTDEYLEGMMSEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHE
               70        80        90       100       110       120

     120       130       140       150       160       170 
pF1KB0 DYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
       :.:::::::::::::::::::.::::::::::::::.:::::::::::::::
NP_006 DHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRILKHGAKDKDD
              130       140       150       160       170  

>>NP_000423 (OMIM: 160781,608758) myosin regulatory ligh  (166 aa)
 initn: 627 init1: 388 opt: 634  Z-score: 684.2  bits: 133.0 E(85289): 2.3e-31
Smith-Waterman score: 634; 57.7% identity (84.7% similar) in 163 aa overlap (9-170:5-166)

               10        20        30        40        50        60
pF1KB0 MSSKRTKTKTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASL
               :.:::   :.::::.::.:.:::::::::...::::::::::.::.: .:.:
NP_000     MAPKKAKKRAGGANSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAAL
                   10        20        30        40        50      

                70        80        90       100       110         
pF1KB0 GK-NPTDEYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQE
       :. :  .: .: :..:::::::::.:::::::::.:.:::..: :::  :: :. :... 
NP_000 GRVNVKNEEIDEMIKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVLKA
         60        70        80        90       100       110      

     120       130       140       150       160       170 
pF1KB0 DYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
       ::.::.:::...::. ::::...   : :  ::..: ....:. :: ..:: 
NP_000 DYVREMLTTQAERFSKEEVDQMFAAFPPDVTGNLDYKNLVHIITHG-EEKD 
        120       130       140       150       160        

>>XP_016863734 (OMIM: 160782) PREDICTED: myosin light ch  (173 aa)
 initn: 586 init1: 341 opt: 615  Z-score: 664.0  bits: 129.3 E(85289): 3e-30
Smith-Waterman score: 615; 53.8% identity (80.3% similar) in 173 aa overlap (1-170:1-173)

               10          20        30        40        50        
pF1KB0 MSSKRTKTKTKK--RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLA
       :.:..:: :     : :::.::::. :.:.:::::::::...:::::::::::::.:  :
XP_016 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA
               10        20        30        40        50        60

       60         70        80        90       100       110       
pF1KB0 SLGK-NPTDEYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTI
       :::: :  :. ::::..:: :::::::::..:::::.::: :..: :::  .: .. : :
XP_016 SLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKI
               70        80        90       100       110       120

       120       130       140       150       160       170 
pF1KB0 QEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
       ...:...:: ...:..: ::::.... : ::  ::..:  .. .. :: . .. 
XP_016 NKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE 
              130       140       150       160       170    

>>NP_002468 (OMIM: 160782) myosin light chain 5 [Homo sa  (173 aa)
 initn: 586 init1: 341 opt: 615  Z-score: 664.0  bits: 129.3 E(85289): 3e-30
Smith-Waterman score: 615; 53.8% identity (80.3% similar) in 173 aa overlap (1-170:1-173)

               10          20        30        40        50        
pF1KB0 MSSKRTKTKTKK--RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLA
       :.:..:: :     : :::.::::. :.:.:::::::::...:::::::::::::.:  :
NP_002 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA
               10        20        30        40        50        60

       60         70        80        90       100       110       
pF1KB0 SLGK-NPTDEYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTI
       :::: :  :. ::::..:: :::::::::..:::::.::: :..: :::  .: .. : :
NP_002 SLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKI
               70        80        90       100       110       120

       120       130       140       150       160       170 
pF1KB0 QEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
       ...:...:: ...:..: ::::.... : ::  ::..:  .. .. :: . .. 
NP_002 NKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE 
              130       140       150       160       170    

>>XP_016863735 (OMIM: 160782) PREDICTED: myosin light ch  (173 aa)
 initn: 586 init1: 341 opt: 615  Z-score: 664.0  bits: 129.3 E(85289): 3e-30
Smith-Waterman score: 615; 53.8% identity (80.3% similar) in 173 aa overlap (1-170:1-173)

               10          20        30        40        50        
pF1KB0 MSSKRTKTKTKK--RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLA
       :.:..:: :     : :::.::::. :.:.:::::::::...:::::::::::::.:  :
XP_016 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA
               10        20        30        40        50        60

       60         70        80        90       100       110       
pF1KB0 SLGK-NPTDEYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTI
       :::: :  :. ::::..:: :::::::::..:::::.::: :..: :::  .: .. : :
XP_016 SLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKI
               70        80        90       100       110       120

       120       130       140       150       160       170 
pF1KB0 QEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
       ...:...:: ...:..: ::::.... : ::  ::..:  .. .. :: . .. 
XP_016 NKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE 
              130       140       150       160       170    

>>XP_006713949 (OMIM: 160782) PREDICTED: myosin light ch  (328 aa)
 initn: 586 init1: 341 opt: 608  Z-score: 653.4  bits: 128.2 E(85289): 1.2e-29
Smith-Waterman score: 608; 53.5% identity (80.2% similar) in 172 aa overlap (2-170:157-328)

                                            10          20         
pF1KB0                              MSSKRTKTKTKK--RPQRATSNVFAMFDQSQ
                                     .:..:: :     : :::.::::. :.:.:
XP_006 PPSASWPCVHTPDCGPGRTLSSCAERRRPEASRKTKKKEGGALRAQRASSNVFSNFEQTQ
        130       140       150       160       170       180      

      30        40        50        60         70        80        
pF1KB0 IQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDEYLDAMMNEAPGPINFTMFLTM
       ::::::::...:::::::::::::.:  ::::: :  :. ::::..:: :::::::::..
XP_006 IQEFKEAFTLMDQNRDGFIDKEDLKDTYASLGKTNVKDDELDAMLKEASGPINFTMFLNL
        190       200       210       220       230       240      

       90       100       110       120       130       140        
pF1KB0 FGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPID
       :::::.::: :..: :::  .: .. : :...:...:: ...:..: ::::.... : ::
XP_006 FGEKLSGTDAEETILNAFKMLDPDGKGKINKEYIKRLLMSQADKMTAEEVDQMFQFASID
        250       260       270       280       290       300      

      150       160       170 
pF1KB0 KKGNFNYIEFTRILKHGAKDKDD
         ::..:  .. .. :: . .. 
XP_006 VAGNLDYKALSYVITHGEEKEE 
        310       320         

>>NP_067046 (OMIM: 613993) myosin regulatory light chain  (175 aa)
 initn: 570 init1: 338 opt: 559  Z-score: 605.0  bits: 118.4 E(85289): 5.8e-27
Smith-Waterman score: 559; 48.6% identity (78.3% similar) in 175 aa overlap (1-170:1-175)

               10            20        30        40        50      
pF1KB0 MSSKRTKTKTK----KRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDM
       :.:... :. :    :. ::..::::.::.:.:::::::::. :::::::.: : ::.. 
NP_067 MASRKAGTRGKVAATKQAQRGSSNVFSMFEQAQIQEFKEAFSCIDQNRDGIICKADLRET
               10        20        30        40        50        60

         60         70        80        90       100       110     
pF1KB0 LASLGK-NPTDEYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATG
        ..::: .  .: ::::..:. ::::::.:::.:::::::::::..: .::  ::  . :
NP_067 YSQLGKVSVPEEELDAMLQEGKGPINFTVFLTLFGEKLNGTDPEEAILSAFRMFDPSGKG
               70        80        90       100       110       120

         120       130       140       150       160       170 
pF1KB0 TIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
       ....: ...:: :..:.:.  ::....  .:.:  ::..:  .  :. :: . .. 
NP_067 VVNKDEFKQLLLTQADKFSPAEVEQMFALTPMDLAGNIDYKSLCYIITHGDEKEE 
              130       140       150       160       170      




171 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:49:41 2016 done: Sat Nov  5 11:49:42 2016
 Total Scan time:  5.230 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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