Result of FASTA (omim) for pF1KE2304
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2304, 300 aa
  1>>>pF1KE2304 300 - 300 aa - 300 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6397+/-0.000378; mu= -0.8089+/- 0.024
 mean_var=155.0111+/-31.200, 0's: 0 Z-trim(117.6): 65  B-trim: 332 in 2/50
 Lambda= 0.103013
 statistics sampled from 29609 (29675) to 29609 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.348), width:  16
 Scan time:  6.740

The best scores are:                                      opt bits E(85289)
NP_000573 (OMIM: 166490) osteopontin isoform OPN-b ( 300) 2024 312.4 6.9e-85
NP_001035147 (OMIM: 166490) osteopontin isoform OP ( 314) 1639 255.2 1.2e-67
NP_001238759 (OMIM: 166490) osteopontin isoform 5  ( 327) 1639 255.2 1.3e-67
XP_016864053 (OMIM: 166490) PREDICTED: osteopontin ( 327) 1639 255.2 1.3e-67
NP_001035149 (OMIM: 166490) osteopontin isoform OP ( 287) 1637 254.9 1.4e-67
NP_001238758 (OMIM: 166490) osteopontin isoform 4  ( 273) 1632 254.1 2.2e-67


>>NP_000573 (OMIM: 166490) osteopontin isoform OPN-b pre  (300 aa)
 initn: 2024 init1: 2024 opt: 2024  Z-score: 1645.0  bits: 312.4 E(85289): 6.9e-85
Smith-Waterman score: 2024; 100.0% identity (100.0% similar) in 300 aa overlap (1-300:1-300)

               10        20        30        40        50        60
pF1KE2 MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQTL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 PSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDDVDDTDDSHQSDESHHSDESDELVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDDVDDTDDSHQSDESHHSDESDELVT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 DFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHME
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 SEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDES
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 NEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPKSKEEDKHLKFRISHELDSASSEVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 NEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPKSKEEDKHLKFRISHELDSASSEVN
              250       260       270       280       290       300

>>NP_001035147 (OMIM: 166490) osteopontin isoform OPN-a   (314 aa)
 initn: 1627 init1: 1627 opt: 1639  Z-score: 1335.4  bits: 255.2 E(85289): 1.2e-67
Smith-Waterman score: 1986; 95.5% identity (95.5% similar) in 314 aa overlap (1-300:1-314)

               10        20        30        40        50          
pF1KE2 MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQ--
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
NP_001 MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQNA
               10        20        30        40        50        60

                   60        70        80        90       100      
pF1KE2 ------------TLPSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDDVDDTDDSHQS
                   ::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSSEETNDFKQETLPSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDDVDDTDDSHQS
               70        80        90       100       110       120

        110       120       130       140       150       160      
pF1KE2 DESHHSDESDELVTDFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSKSKKFRRPDIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DESHHSDESDELVTDFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSKSKKFRRPDIQ
              130       140       150       160       170       180

        170       180       190       200       210       220      
pF1KE2 YPDATDEDITSHMESEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQLDDQSAETHSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YPDATDEDITSHMESEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQLDDQSAETHSH
              190       200       210       220       230       240

        230       240       250       260       270       280      
pF1KE2 KQSRLYKRKANDESNEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPKSKEEDKHLKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KQSRLYKRKANDESNEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPKSKEEDKHLKF
              250       260       270       280       290       300

        290       300
pF1KE2 RISHELDSASSEVN
       ::::::::::::::
NP_001 RISHELDSASSEVN
              310    

>>NP_001238759 (OMIM: 166490) osteopontin isoform 5 [Hom  (327 aa)
 initn: 1627 init1: 1627 opt: 1639  Z-score: 1335.1  bits: 255.2 E(85289): 1.3e-67
Smith-Waterman score: 1788; 92.5% identity (93.2% similar) in 294 aa overlap (21-300:34-327)

                         10        20        30        40        50
pF1KE2           MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQ
                                     : :   .  :.:::::::::::::::::::
NP_001 VPRSLDKKAHRVQFQLNRIKAKIELPWGSLQLDCLMKTLKELYNKYPDAVATWLNPDPSQ
            10        20        30        40        50        60   

                             60        70        80        90      
pF1KE2 KQNLLAPQ--------------TLPSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDD
       ::::::::              ::::::::::::::::::::::::::::::::::::::
NP_001 KQNLLAPQNAVSSEETNDFKQETLPSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDD
            70        80        90       100       110       120   

        100       110       120       130       140       150      
pF1KE2 VDDTDDSHQSDESHHSDESDELVTDFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDDTDDSHQSDESHHSDESDELVTDFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSK
           130       140       150       160       170       180   

        160       170       180       190       200       210      
pF1KE2 SKKFRRPDIQYPDATDEDITSHMESEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SKKFRRPDIQYPDATDEDITSHMESEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQL
           190       200       210       220       230       240   

        220       230       240       250       260       270      
pF1KE2 DDQSAETHSHKQSRLYKRKANDESNEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DDQSAETHSHKQSRLYKRKANDESNEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPK
           250       260       270       280       290       300   

        280       290       300
pF1KE2 SKEEDKHLKFRISHELDSASSEVN
       ::::::::::::::::::::::::
NP_001 SKEEDKHLKFRISHELDSASSEVN
           310       320       

>>XP_016864053 (OMIM: 166490) PREDICTED: osteopontin iso  (327 aa)
 initn: 1627 init1: 1627 opt: 1639  Z-score: 1335.1  bits: 255.2 E(85289): 1.3e-67
Smith-Waterman score: 1788; 92.5% identity (93.2% similar) in 294 aa overlap (21-300:34-327)

                         10        20        30        40        50
pF1KE2           MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQ
                                     : :   .  :.:::::::::::::::::::
XP_016 VPRSLDKKAHRVQFQLNRIKAKIELPWGSLQLDCLMKTLKELYNKYPDAVATWLNPDPSQ
            10        20        30        40        50        60   

                             60        70        80        90      
pF1KE2 KQNLLAPQ--------------TLPSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDD
       ::::::::              ::::::::::::::::::::::::::::::::::::::
XP_016 KQNLLAPQNAVSSEETNDFKQETLPSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDD
            70        80        90       100       110       120   

        100       110       120       130       140       150      
pF1KE2 VDDTDDSHQSDESHHSDESDELVTDFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VDDTDDSHQSDESHHSDESDELVTDFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSK
           130       140       150       160       170       180   

        160       170       180       190       200       210      
pF1KE2 SKKFRRPDIQYPDATDEDITSHMESEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SKKFRRPDIQYPDATDEDITSHMESEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQL
           190       200       210       220       230       240   

        220       230       240       250       260       270      
pF1KE2 DDQSAETHSHKQSRLYKRKANDESNEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DDQSAETHSHKQSRLYKRKANDESNEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPK
           250       260       270       280       290       300   

        280       290       300
pF1KE2 SKEEDKHLKFRISHELDSASSEVN
       ::::::::::::::::::::::::
XP_016 SKEEDKHLKFRISHELDSASSEVN
           310       320       

>>NP_001035149 (OMIM: 166490) osteopontin isoform OPN-c   (287 aa)
 initn: 1821 init1: 1627 opt: 1637  Z-score: 1334.4  bits: 254.9 E(85289): 1.4e-67
Smith-Waterman score: 1811; 92.3% identity (94.3% similar) in 300 aa overlap (1-300:1-287)

               10        20        30        40        50        60
pF1KE2 MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQTL
       :::::::::::::::::::::::::::::::      .::.       :.. : .  .::
NP_001 MRIAVICFCLLGITCAIPVKQADSGSSEEKQ------NAVS-------SEETNDFKQETL
               10        20        30                     40       

               70        80        90       100       110       120
pF1KE2 PSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDDVDDTDDSHQSDESHHSDESDELVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDDVDDTDDSHQSDESHHSDESDELVT
        50        60        70        80        90       100       

              130       140       150       160       170       180
pF1KE2 DFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHME
       110       120       130       140       150       160       

              190       200       210       220       230       240
pF1KE2 SEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDES
       170       180       190       200       210       220       

              250       260       270       280       290       300
pF1KE2 NEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPKSKEEDKHLKFRISHELDSASSEVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPKSKEEDKHLKFRISHELDSASSEVN
       230       240       250       260       270       280       

>>NP_001238758 (OMIM: 166490) osteopontin isoform 4 prec  (273 aa)
 initn: 1632 init1: 1632 opt: 1632  Z-score: 1330.8  bits: 254.1 E(85289): 2.2e-67
Smith-Waterman score: 1769; 91.0% identity (91.0% similar) in 300 aa overlap (1-300:1-273)

               10        20        30        40        50        60
pF1KE2 MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQTL
       :::::::::::::::::::::::::::::::                           ::
NP_001 MRIAVICFCLLGITCAIPVKQADSGSSEEKQ---------------------------TL
               10        20        30                              

               70        80        90       100       110       120
pF1KE2 PSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDDVDDTDDSHQSDESHHSDESDELVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDDVDDTDDSHQSDESHHSDESDELVT
            40        50        60        70        80        90   

              130       140       150       160       170       180
pF1KE2 DFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHME
           100       110       120       130       140       150   

              190       200       210       220       230       240
pF1KE2 SEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDES
           160       170       180       190       200       210   

              250       260       270       280       290       300
pF1KE2 NEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPKSKEEDKHLKFRISHELDSASSEVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPKSKEEDKHLKFRISHELDSASSEVN
           220       230       240       250       260       270   




300 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:15:17 2016 done: Sun Nov  6 23:15:18 2016
 Total Scan time:  6.740 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com