Result of FASTA (omim) for pF1KB8910
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8910, 208 aa
  1>>>pF1KB8910 208 - 208 aa - 208 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3746+/-0.000329; mu= 13.1876+/- 0.020
 mean_var=69.1491+/-13.898, 0's: 0 Z-trim(115.7): 74  B-trim: 290 in 1/52
 Lambda= 0.154234
 statistics sampled from 26300 (26388) to 26300 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.309), width:  16
 Scan time:  6.250

The best scores are:                                      opt bits E(85289)
NP_003815 (OMIM: 602457,613759) FAS-associated dea ( 208) 1347 308.3 5.6e-84
XP_016866893 (OMIM: 603453) PREDICTED: receptor-in ( 382)  154 43.0 0.00076
XP_016866892 (OMIM: 603453) PREDICTED: receptor-in ( 508)  154 43.1 0.00096
NP_001303990 (OMIM: 603453) receptor-interacting s ( 508)  154 43.1 0.00096
XP_005249514 (OMIM: 603453) PREDICTED: receptor-in ( 671)  154 43.2  0.0012
NP_003795 (OMIM: 603453) receptor-interacting seri ( 671)  154 43.2  0.0012
XP_006712856 (OMIM: 114480,114550,211980,601763,60 ( 235)  147 41.3  0.0015
NP_203522 (OMIM: 114480,114550,211980,601763,60727 ( 235)  147 41.3  0.0015
XP_005246952 (OMIM: 114480,114550,211980,601763,60 ( 279)  147 41.4  0.0017
XP_005246950 (OMIM: 114480,114550,211980,601763,60 ( 294)  147 41.4  0.0018
XP_005246949 (OMIM: 114480,114550,211980,601763,60 ( 464)  147 41.5  0.0026
NP_001073593 (OMIM: 114480,114550,211980,601763,60 ( 464)  147 41.5  0.0026
NP_203520 (OMIM: 114480,114550,211980,601763,60727 ( 464)  147 41.5  0.0026
XP_005246947 (OMIM: 114480,114550,211980,601763,60 ( 479)  147 41.5  0.0027
XP_005246948 (OMIM: 114480,114550,211980,601763,60 ( 479)  147 41.5  0.0027
XP_006712853 (OMIM: 114480,114550,211980,601763,60 ( 479)  147 41.5  0.0027
XP_006712852 (OMIM: 114480,114550,211980,601763,60 ( 479)  147 41.5  0.0027
XP_005246943 (OMIM: 114480,114550,211980,601763,60 ( 479)  147 41.5  0.0027
XP_005246946 (OMIM: 114480,114550,211980,601763,60 ( 479)  147 41.5  0.0027
NP_203519 (OMIM: 114480,114550,211980,601763,60727 ( 479)  147 41.5  0.0027
XP_005246945 (OMIM: 114480,114550,211980,601763,60 ( 479)  147 41.5  0.0027
XP_005246944 (OMIM: 114480,114550,211980,601763,60 ( 479)  147 41.5  0.0027
NP_001219 (OMIM: 114480,114550,211980,601763,60727 ( 496)  147 41.5  0.0028
XP_005246942 (OMIM: 114480,114550,211980,601763,60 ( 523)  147 41.5  0.0029
NP_001073594 (OMIM: 114480,114550,211980,601763,60 ( 538)  147 41.6   0.003
NP_001293012 (OMIM: 601762,603909,605027,613659) c ( 247)  142 40.2  0.0034
XP_011510292 (OMIM: 601762,603909,605027,613659) P ( 272)  142 40.3  0.0036
NP_116758 (OMIM: 601762,603909,605027,613659) casp ( 273)  142 40.3  0.0036
NP_001193453 (OMIM: 601762,603909,605027,613659) c ( 455)  142 40.4  0.0056
NP_001193471 (OMIM: 601762,603909,605027,613659) c ( 478)  142 40.4  0.0058
NP_001221 (OMIM: 601762,603909,605027,613659) casp ( 479)  142 40.4  0.0058
XP_005246964 (OMIM: 601762,603909,605027,613659) P ( 521)  142 40.4  0.0062
NP_116756 (OMIM: 601762,603909,605027,613659) casp ( 521)  142 40.4  0.0062
NP_116759 (OMIM: 601762,603909,605027,613659) casp ( 522)  142 40.4  0.0062


>>NP_003815 (OMIM: 602457,613759) FAS-associated death d  (208 aa)
 initn: 1347 init1: 1347 opt: 1347  Z-score: 1628.6  bits: 308.3 E(85289): 5.6e-84
Smith-Waterman score: 1347; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208)

               10        20        30        40        50        60
pF1KB8 MDPFLVLLHSVSSSLSSSELTELKFLCLGRVGKRKLERVQSGLDLFSMLLEQNDLEPGHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MDPFLVLLHSVSSSLSSSELTELKFLCLGRVGKRKLERVQSGLDLFSMLLEQNDLEPGHT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ELLRELLASLRRHDLLRRVDDFEAGAAAGAAPGEEDLCAAFNVICDNVGKDWRRLARQLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ELLRELLASLRRHDLLRRVDDFEAGAAAGAAPGEEDLCAAFNVICDNVGKDWRRLARQLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VSDTKIDSIEDRYPRNLTERVRESLRIWKNTEKENATVAHLVGALRSCQMNLVADLVQEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VSDTKIDSIEDRYPRNLTERVRESLRIWKNTEKENATVAHLVGALRSCQMNLVADLVQEV
              130       140       150       160       170       180

              190       200        
pF1KB8 QQARDLQNRSGAMSPMSWNSDASTSEAS
       ::::::::::::::::::::::::::::
NP_003 QQARDLQNRSGAMSPMSWNSDASTSEAS
              190       200        

>>XP_016866893 (OMIM: 603453) PREDICTED: receptor-intera  (382 aa)
 initn: 127 init1:  82 opt: 154  Z-score: 190.1  bits: 43.0 E(85289): 0.00076
Smith-Waterman score: 154; 35.8% identity (69.1% similar) in 81 aa overlap (104-181:301-381)

            80        90       100       110       120       130   
pF1KB8 DLLRRVDDFEAGAAAGAAPGEEDLCAAFNVICDNVGKDWRRLARQLKVSDTKIDSIEDRY
                                     : .:.:: :.  ::.:  ....:: :.  :
XP_016 TNTNFKEEPAAKYQAIFDNTTSLTDKHLDPIRENLGKHWKNCARKLGFTQSQIDEIDHDY
              280       290       300       310       320       330

            140       150        160        170       180       190
pF1KB8 PRN-LTERVRESLRIWKNTEK-ENATVAHLVGALRSC-QMNLVADLVQEVQQARDLQNRS
        :. : :.: . :. :   :  ..:::..:. ::..: ...:...:.   :         
XP_016 ERDGLKEKVYQMLQKWVMREGIKGATVGKLAQALHQCSRIDLLSSLIYVSQN        
              340       350       360       370       380          

              200        
pF1KB8 GAMSPMSWNSDASTSEAS

>>XP_016866892 (OMIM: 603453) PREDICTED: receptor-intera  (508 aa)
 initn: 129 init1:  82 opt: 154  Z-score: 188.2  bits: 43.1 E(85289): 0.00096
Smith-Waterman score: 154; 35.8% identity (69.1% similar) in 81 aa overlap (104-181:427-507)

            80        90       100       110       120       130   
pF1KB8 DLLRRVDDFEAGAAAGAAPGEEDLCAAFNVICDNVGKDWRRLARQLKVSDTKIDSIEDRY
                                     : .:.:: :.  ::.:  ....:: :.  :
XP_016 TNTNFKEEPAAKYQAIFDNTTSLTDKHLDPIRENLGKHWKNCARKLGFTQSQIDEIDHDY
        400       410       420       430       440       450      

            140       150        160        170       180       190
pF1KB8 PRN-LTERVRESLRIWKNTEK-ENATVAHLVGALRSC-QMNLVADLVQEVQQARDLQNRS
        :. : :.: . :. :   :  ..:::..:. ::..: ...:...:.   :         
XP_016 ERDGLKEKVYQMLQKWVMREGIKGATVGKLAQALHQCSRIDLLSSLIYVSQN        
        460       470       480       490       500                

              200        
pF1KB8 GAMSPMSWNSDASTSEAS

>>NP_001303990 (OMIM: 603453) receptor-interacting serin  (508 aa)
 initn: 129 init1:  82 opt: 154  Z-score: 188.2  bits: 43.1 E(85289): 0.00096
Smith-Waterman score: 154; 35.8% identity (69.1% similar) in 81 aa overlap (104-181:427-507)

            80        90       100       110       120       130   
pF1KB8 DLLRRVDDFEAGAAAGAAPGEEDLCAAFNVICDNVGKDWRRLARQLKVSDTKIDSIEDRY
                                     : .:.:: :.  ::.:  ....:: :.  :
NP_001 TNTNFKEEPAAKYQAIFDNTTSLTDKHLDPIRENLGKHWKNCARKLGFTQSQIDEIDHDY
        400       410       420       430       440       450      

            140       150        160        170       180       190
pF1KB8 PRN-LTERVRESLRIWKNTEK-ENATVAHLVGALRSC-QMNLVADLVQEVQQARDLQNRS
        :. : :.: . :. :   :  ..:::..:. ::..: ...:...:.   :         
NP_001 ERDGLKEKVYQMLQKWVMREGIKGATVGKLAQALHQCSRIDLLSSLIYVSQN        
        460       470       480       490       500                

              200        
pF1KB8 GAMSPMSWNSDASTSEAS

>>XP_005249514 (OMIM: 603453) PREDICTED: receptor-intera  (671 aa)
 initn: 109 init1:  82 opt: 154  Z-score: 186.4  bits: 43.2 E(85289): 0.0012
Smith-Waterman score: 154; 35.8% identity (69.1% similar) in 81 aa overlap (104-181:590-670)

            80        90       100       110       120       130   
pF1KB8 DLLRRVDDFEAGAAAGAAPGEEDLCAAFNVICDNVGKDWRRLARQLKVSDTKIDSIEDRY
                                     : .:.:: :.  ::.:  ....:: :.  :
XP_005 TNTNFKEEPAAKYQAIFDNTTSLTDKHLDPIRENLGKHWKNCARKLGFTQSQIDEIDHDY
     560       570       580       590       600       610         

            140       150        160        170       180       190
pF1KB8 PRN-LTERVRESLRIWKNTEK-ENATVAHLVGALRSC-QMNLVADLVQEVQQARDLQNRS
        :. : :.: . :. :   :  ..:::..:. ::..: ...:...:.   :         
XP_005 ERDGLKEKVYQMLQKWVMREGIKGATVGKLAQALHQCSRIDLLSSLIYVSQN        
     620       630       640       650       660       670         

              200        
pF1KB8 GAMSPMSWNSDASTSEAS

>>NP_003795 (OMIM: 603453) receptor-interacting serine/t  (671 aa)
 initn: 109 init1:  82 opt: 154  Z-score: 186.4  bits: 43.2 E(85289): 0.0012
Smith-Waterman score: 154; 35.8% identity (69.1% similar) in 81 aa overlap (104-181:590-670)

            80        90       100       110       120       130   
pF1KB8 DLLRRVDDFEAGAAAGAAPGEEDLCAAFNVICDNVGKDWRRLARQLKVSDTKIDSIEDRY
                                     : .:.:: :.  ::.:  ....:: :.  :
NP_003 TNTNFKEEPAAKYQAIFDNTTSLTDKHLDPIRENLGKHWKNCARKLGFTQSQIDEIDHDY
     560       570       580       590       600       610         

            140       150        160        170       180       190
pF1KB8 PRN-LTERVRESLRIWKNTEK-ENATVAHLVGALRSC-QMNLVADLVQEVQQARDLQNRS
        :. : :.: . :. :   :  ..:::..:. ::..: ...:...:.   :         
NP_003 ERDGLKEKVYQMLQKWVMREGIKGATVGKLAQALHQCSRIDLLSSLIYVSQN        
     620       630       640       650       660       670         

              200        
pF1KB8 GAMSPMSWNSDASTSEAS

>>XP_006712856 (OMIM: 114480,114550,211980,601763,607271  (235 aa)
 initn: 146 init1: 146 opt: 147  Z-score: 184.8  bits: 41.3 E(85289): 0.0015
Smith-Waterman score: 147; 39.5% identity (67.1% similar) in 76 aa overlap (1-76:1-75)

               10        20        30        40        50        60
pF1KB8 MDPFLVLLHSVSSSLSSSELTELKFLCLGRVGKRKLERVQSGLDLFSMLLEQNDLEPGHT
       :: :   :.... .:.: .:. :::: :  . .:: : ....: ::. : :.  :: .. 
XP_006 MD-FSRNLYDIGEQLDSEDLASLKFLSLDYIPQRKQEPIKDALMLFQRLQEKRMLEESNL
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB8 ELLRELLASLRRHDLLRRVDDFEAGAAAGAAPGEEDLCAAFNVICDNVGKDWRRLARQLK
        .:.:::  . : :::                                            
XP_006 SFLKELLFRINRLDLLITYLNTRKEEMERELQTPGRAQISAYRVMLYQISEEVSRSELRS
      60        70        80        90       100       110         

>>NP_203522 (OMIM: 114480,114550,211980,601763,607271) c  (235 aa)
 initn: 146 init1: 146 opt: 147  Z-score: 184.8  bits: 41.3 E(85289): 0.0015
Smith-Waterman score: 147; 39.5% identity (67.1% similar) in 76 aa overlap (1-76:1-75)

               10        20        30        40        50        60
pF1KB8 MDPFLVLLHSVSSSLSSSELTELKFLCLGRVGKRKLERVQSGLDLFSMLLEQNDLEPGHT
       :: :   :.... .:.: .:. :::: :  . .:: : ....: ::. : :.  :: .. 
NP_203 MD-FSRNLYDIGEQLDSEDLASLKFLSLDYIPQRKQEPIKDALMLFQRLQEKRMLEESNL
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB8 ELLRELLASLRRHDLLRRVDDFEAGAAAGAAPGEEDLCAAFNVICDNVGKDWRRLARQLK
        .:.:::  . : :::                                            
NP_203 SFLKELLFRINRLDLLITYLNTRKEEMERELQTPGRAQISAYRVMLYQISEEVSRSELRS
      60        70        80        90       100       110         

>>XP_005246952 (OMIM: 114480,114550,211980,601763,607271  (279 aa)
 initn: 146 init1: 146 opt: 147  Z-score: 183.7  bits: 41.4 E(85289): 0.0017
Smith-Waterman score: 147; 39.5% identity (67.1% similar) in 76 aa overlap (1-76:60-134)

                                             10        20        30
pF1KB8                               MDPFLVLLHSVSSSLSSSELTELKFLCLGR
                                     :: :   :.... .:.: .:. :::: :  
XP_005 HVELGRLGDSETAMVPGKGGADYILLPFKKMD-FSRNLYDIGEQLDSEDLASLKFLSLDY
      30        40        50        60         70        80        

               40        50        60        70        80        90
pF1KB8 VGKRKLERVQSGLDLFSMLLEQNDLEPGHTELLRELLASLRRHDLLRRVDDFEAGAAAGA
       . .:: : ....: ::. : :.  :: ..  .:.:::  . : :::              
XP_005 IPQRKQEPIKDALMLFQRLQEKRMLEESNLSFLKELLFRINRLDLLITYLNTRKEEMERE
       90       100       110       120       130       140        

              100       110       120       130       140       150
pF1KB8 APGEEDLCAAFNVICDNVGKDWRRLARQLKVSDTKIDSIEDRYPRNLTERVRESLRIWKN
                                                                   
XP_005 LQTPGRAQISAYRVMLYQISEEVSRSELRSFKFLLQEEISKCKLDDDMNLLDIFIEMEKR
      150       160       170       180       190       200        

>>XP_005246950 (OMIM: 114480,114550,211980,601763,607271  (294 aa)
 initn: 146 init1: 146 opt: 147  Z-score: 183.3  bits: 41.4 E(85289): 0.0018
Smith-Waterman score: 147; 39.5% identity (67.1% similar) in 76 aa overlap (1-76:60-134)

                                             10        20        30
pF1KB8                               MDPFLVLLHSVSSSLSSSELTELKFLCLGR
                                     :: :   :.... .:.: .:. :::: :  
XP_005 HVELGRLGDSETAMVPGKGGADYILLPFKKMD-FSRNLYDIGEQLDSEDLASLKFLSLDY
      30        40        50        60         70        80        

               40        50        60        70        80        90
pF1KB8 VGKRKLERVQSGLDLFSMLLEQNDLEPGHTELLRELLASLRRHDLLRRVDDFEAGAAAGA
       . .:: : ....: ::. : :.  :: ..  .:.:::  . : :::              
XP_005 IPQRKQEPIKDALMLFQRLQEKRMLEESNLSFLKELLFRINRLDLLITYLNTRKEEMERE
       90       100       110       120       130       140        

              100       110       120       130       140       150
pF1KB8 APGEEDLCAAFNVICDNVGKDWRRLARQLKVSDTKIDSIEDRYPRNLTERVRESLRIWKN
                                                                   
XP_005 LQTPGRAQISAYRVMLYQISEEVSRSELRSFKFLLQEEISKCKLDDDMNLLDIFIEMEKR
      150       160       170       180       190       200        




208 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:00:35 2016 done: Sat Nov  5 20:00:36 2016
 Total Scan time:  6.250 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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