Result of FASTA (ccds) for pF1KB9957
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9957, 538 aa
  1>>>pF1KB9957 538 - 538 aa - 538 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3677+/-0.00101; mu= 18.0104+/- 0.060
 mean_var=65.0865+/-12.981, 0's: 0 Z-trim(102.2): 30  B-trim: 0 in 0/51
 Lambda= 0.158975
 statistics sampled from 6845 (6856) to 6845 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.571), E-opt: 0.2 (0.211), width:  16
 Scan time:  3.020

The best scores are:                                      opt bits E(32554)
CCDS1379.1 TROVE2 gene_id:6738|Hs108|chr1          ( 538) 3541 821.5       0
CCDS41450.2 TROVE2 gene_id:6738|Hs108|chr1         ( 534) 3479 807.3       0
CCDS41449.1 TROVE2 gene_id:6738|Hs108|chr1         ( 525) 3379 784.3       0
CCDS53451.1 TROVE2 gene_id:6738|Hs108|chr1         ( 518) 3376 783.6       0


>>CCDS1379.1 TROVE2 gene_id:6738|Hs108|chr1               (538 aa)
 initn: 3541 init1: 3541 opt: 3541  Z-score: 4387.1  bits: 821.5 E(32554):    0
Smith-Waterman score: 3541; 100.0% identity (100.0% similar) in 538 aa overlap (1-538:1-538)

               10        20        30        40        50        60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
              430       440       450       460       470       480

              490       500       510       520       530        
pF1KB9 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
              490       500       510       520       530        

>>CCDS41450.2 TROVE2 gene_id:6738|Hs108|chr1              (534 aa)
 initn: 3479 init1: 3479 opt: 3479  Z-score: 4310.3  bits: 807.3 E(32554):    0
Smith-Waterman score: 3479; 100.0% identity (100.0% similar) in 528 aa overlap (1-528:1-528)

               10        20        30        40        50        60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
              430       440       450       460       470       480

              490       500       510       520       530        
pF1KB9 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
       ::::::::::::::::::::::::::::::::::::::::::::::::          
CCDS41 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDPCKIPY    
              490       500       510       520       530        

>>CCDS41449.1 TROVE2 gene_id:6738|Hs108|chr1              (525 aa)
 initn: 3379 init1: 3379 opt: 3379  Z-score: 4186.5  bits: 784.3 E(32554):    0
Smith-Waterman score: 3379; 99.6% identity (100.0% similar) in 516 aa overlap (1-516:1-516)

               10        20        30        40        50        60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
              430       440       450       460       470       480

              490       500       510       520       530        
pF1KB9 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
       ::::::::::::::::::::::::::::::::::..                      
CCDS41 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRALQNTLLNKSF             
              490       500       510       520                  

>>CCDS53451.1 TROVE2 gene_id:6738|Hs108|chr1              (518 aa)
 initn: 3376 init1: 3376 opt: 3376  Z-score: 4182.9  bits: 783.6 E(32554):    0
Smith-Waterman score: 3376; 100.0% identity (100.0% similar) in 514 aa overlap (1-514:1-514)

               10        20        30        40        50        60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
              430       440       450       460       470       480

              490       500       510       520       530        
pF1KB9 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
       ::::::::::::::::::::::::::::::::::                        
CCDS53 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRDTVK                    
              490       500       510                            




538 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 08:17:46 2016 done: Sat Nov  5 08:17:47 2016
 Total Scan time:  3.020 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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