Result of FASTA (ccds) for pF1KB6512
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6512, 384 aa
  1>>>pF1KB6512 384 - 384 aa - 384 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4957+/-0.000773; mu= 15.9020+/- 0.047
 mean_var=66.1879+/-13.063, 0's: 0 Z-trim(108.1): 22  B-trim: 84 in 1/50
 Lambda= 0.157647
 statistics sampled from 9966 (9986) to 9966 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.685), E-opt: 0.2 (0.307), width:  16
 Scan time:  2.700

The best scores are:                                      opt bits E(32554)
CCDS9789.1 RAD51B gene_id:5890|Hs108|chr14         ( 384) 2476 571.8 3.6e-163
CCDS81815.1 RAD51B gene_id:5890|Hs108|chr14        ( 425) 2203 509.7 1.9e-144
CCDS9790.1 RAD51B gene_id:5890|Hs108|chr14         ( 350) 2193 507.4 7.9e-144
CCDS9984.1 XRCC3 gene_id:7517|Hs108|chr14          ( 346)  315 80.3   3e-15
CCDS13973.1 DMC1 gene_id:11144|Hs108|chr22         ( 340)  314 80.0 3.4e-15
CCDS11287.1 RAD51D gene_id:5892|Hs108|chr17        ( 328)  311 79.4 5.3e-15
CCDS53932.1 RAD51 gene_id:5888|Hs108|chr15         ( 280)  260 67.7 1.4e-11
CCDS10062.1 RAD51 gene_id:5888|Hs108|chr15         ( 339)  260 67.8 1.7e-11
CCDS45646.1 RAD51D gene_id:5892|Hs108|chr17        ( 348)  250 65.5 8.4e-11


>>CCDS9789.1 RAD51B gene_id:5890|Hs108|chr14              (384 aa)
 initn: 2476 init1: 2476 opt: 2476  Z-score: 3042.9  bits: 571.8 E(32554): 3.6e-163
Smith-Waterman score: 2476; 100.0% identity (100.0% similar) in 384 aa overlap (1-384:1-384)

               10        20        30        40        50        60
pF1KB6 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQETTFCSVTQAELNWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQETTFCSVTQAELNWA
              310       320       330       340       350       360

              370       380    
pF1KB6 PEILPPQPPEQLGLQMCHHTQLIF
       ::::::::::::::::::::::::
CCDS97 PEILPPQPPEQLGLQMCHHTQLIF
              370       380    

>>CCDS81815.1 RAD51B gene_id:5890|Hs108|chr14             (425 aa)
 initn: 2193 init1: 2193 opt: 2203  Z-score: 2706.6  bits: 509.7 E(32554): 1.9e-144
Smith-Waterman score: 2203; 94.9% identity (95.9% similar) in 369 aa overlap (1-368:1-369)

               10        20        30        40        50        60
pF1KB6 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
              250       260       270       280       290       300

              310       320       330       340        350         
pF1KB6 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQET-TFCSVTQAELNW
       ::::::::::::::::::::::::::::::::::::::::::::: . :   :.     :
CCDS81 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQVVRTVARVSPRSECW
              310       320       330       340       350       360

     360       370       380                                       
pF1KB6 APEILPPQPPEQLGLQMCHHTQLIF                                   
       .     :.:                                                   
CCDS81 SAADSHPSPTFLIPDVVLRKTRNPRLLPSVSMCPPQMHSTVLSSALPPTNWATGIRTETL
              370       380       390       400       410       420

>>CCDS9790.1 RAD51B gene_id:5890|Hs108|chr14              (350 aa)
 initn: 2193 init1: 2193 opt: 2193  Z-score: 2695.7  bits: 507.4 E(32554): 7.9e-144
Smith-Waterman score: 2193; 100.0% identity (100.0% similar) in 345 aa overlap (1-345:1-345)

               10        20        30        40        50        60
pF1KB6 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQETTFCSVTQAELNWA
       :::::::::::::::::::::::::::::::::::::::::::::               
CCDS97 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQGQEKP          
              310       320       330       340       350          

              370       380    
pF1KB6 PEILPPQPPEQLGLQMCHHTQLIF

>>CCDS9984.1 XRCC3 gene_id:7517|Hs108|chr14               (346 aa)
 initn: 282 init1: 164 opt: 315  Z-score: 387.4  bits: 80.3 E(32554): 3e-15
Smith-Waterman score: 339; 27.4% identity (57.0% similar) in 351 aa overlap (6-342:3-337)

               10        20        30        40        50          
pF1KB6 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVS-RA
            :  . :. ..   ... .. . .. : .:  .: ..:.::   : .::  .: . 
CCDS99    MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHL
                  10        20        30        40        50       

      60        70         80        90       100       110        
pF1KB6 CAPKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFC
        . .. ::  .. :.     .   ::    .::  :.::.   ..::..:  . ::::. 
CCDS99 RGSSILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLA
        60        70        80        90       100       110       

      120       130       140       150       160       170        
pF1KB6 IMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTS----
       ... . . .: . ::::...::: ::.::  .:: ..  .. ::  .     :: .    
CCDS99 LQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQ-PRLRTDVPGELLQKLRFG
       120       130       140       150        160       170      

          180       190       200        210       220       230   
pF1KB6 SKVHLYRELTCDEVLQRIESLEEEIISKGI-KLVILDSVASVVRKEFDAQLQGNLKERNK
       :.. . .    : .:. ...    ..:.:. .::..::::.  : :::.: ..    : .
CCDS99 SQIFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASA---PRAR
        180       190       200       210       220          230   

           240       250       260       270       280       290   
pF1KB6 FLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVI
        :   ...:. :.  :. ::.  ::.:     :.  :.   .:   :.. .       : 
CCDS99 HLQSLGATLRELSSAFQSPVLCINQVTE----AMEEQGAAHGP---LGFWDER-----VS
           240       250       260           270               280 

           300       310              320       330       340      
pF1KB6 AALGNTWSHSVNTRLILQYLDSER-------RQILIAKSPLAPFTSFVYTIKEEGLVLQE
        ::: ::.... .::. . :  :.       : . . ..:  : .:  :::. ::.    
CCDS99 PALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTP
             290       300       310       320       330       340 

        350       360       370       380    
pF1KB6 TTFCSVTQAELNWAPEILPPQPPEQLGLQMCHHTQLIF
                                             
CCDS99 GTQSH                                 
                                             

>>CCDS13973.1 DMC1 gene_id:11144|Hs108|chr22              (340 aa)
 initn: 256 init1: 137 opt: 314  Z-score: 386.3  bits: 80.0 E(32554): 3.4e-15
Smith-Waterman score: 323; 26.3% identity (54.3% similar) in 339 aa overlap (6-342:27-335)

                                    10        20        30         
pF1KB6                      MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELM
                                 :.. :..     .:.   : : . .   .   : 
CCDS13 MKEDQVVAEEPGFQDEEESLFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALC
               10        20        30        40        50        60

      40        50        60        70        80        90         
pF1KB6 KVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVA
       .: :::   : ..   ...   : . ::.  . .:.  :    ..:  . .:. : ::. 
CCDS13 NVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFH---ITTGSQEFDKLLGGGIE
               70        80        90       100          110       

     100       110       120       130       140       150         
pF1KB6 CGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESR
         ..::  :    ::::.   . . : ::   :   : ...::::..:  .:: .::.  
CCDS13 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIAD--
       120       130       140       150       160       170       

     160       170       180       190       200         210       
pF1KB6 FPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISK-GI-KLVILDSVASVVR
           ::...  .: .  :   :  : .. .. .. .  ..  . :: ::.:.::. .. :
CCDS13 ---RFNVDHDAVLDN--VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR
            180         190       200       210       220       230

       220       230       240       250       260       270       
pF1KB6 KEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPA
        .:...  :.: ::.. ::.  : :. ..::... :..:::.:.  ..... :::  .: 
CCDS13 VDFSGR--GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPI
                240       250       260       270       280        

       280       290       300       310       320       330       
pF1KB6 DDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTI
                          :.  .:. .::. :.   .: :   :  ::  : .  ...:
CCDS13 G------------------GHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAI
                        290       300       310       320       330

       340       350       360       370       380    
pF1KB6 KEEGLVLQETTFCSVTQAELNWAPEILPPQPPEQLGLQMCHHTQLIF
          :.                                          
CCDS13 TAGGIGDAKE                                     
              340                                     

>>CCDS11287.1 RAD51D gene_id:5892|Hs108|chr17             (328 aa)
 initn: 257 init1: 131 opt: 311  Z-score: 382.8  bits: 79.4 E(32554): 5.3e-15
Smith-Waterman score: 321; 28.6% identity (56.8% similar) in 336 aa overlap (10-333:11-305)

                10        20        30        40        50         
pF1KB6  MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHEL--LCMVS
                 ::..:. . :  :.: :  :..  .  :. .  ::::...  :  . ...
CCDS11 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB6 RACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQF
        .  :    . :    .    : :.::: ...::. : .:.  : .:::.: :: :::: 
CCDS11 FSAFP----VNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQV
                   70        80        90       100       110      

       120       130        140       150       160       170      
pF1KB6 CIMMSILATLPTNMG-GLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSK
       :. :.      .:.. ::.  :.:.:......: ::... ...     .  : :   .  
CCDS11 CLCMA------ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQV-
        120             130       140       150       160          

        180       190        200         210       220       230   
pF1KB6 VHLYRELTCDEVLQRIE-SLEEEII-SKG-IKLVILDSVASVVRKEFDAQLQGNLKERNK
       :: .  .   .:::... .. ...  :.: .:.:..:::..::    .  : :. .:   
CCDS11 VHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLA
     170       180       190       200       210           220     

           240       250       260        270       280       290  
pF1KB6 FLAREASSLKYLAEEFSIPVILTNQITTHL-SGALASQADLVSPADDLSLSEGTSGSSCV
       .. . :  :: ::..... :..::.::    :: :       .::               
CCDS11 LMMQLARELKTLARDLGMAVVVTNHITRDRDSGRL-------KPA---------------
         230       240       250       260                         

            300       310            320       330       340       
pF1KB6 IAALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAPFTSFVYTIKEEGLVLQET
          :: .::   .::..:. ...      ::.  .:::   : :.:              
CCDS11 ---LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQP-TGFQEMVDIGTWGTSEQ
              270       280       290       300        310         

       350       360       370       380    
pF1KB6 TFCSVTQAELNWAPEILPPQPPEQLGLQMCHHTQLIF
                                            
CCDS11 SATLQGDQT                            
     320                                    

>>CCDS53932.1 RAD51 gene_id:5888|Hs108|chr15              (280 aa)
 initn: 211 init1: 211 opt: 260  Z-score: 321.2  bits: 67.7 E(32554): 1.4e-11
Smith-Waterman score: 290; 27.9% identity (57.4% similar) in 244 aa overlap (5-248:27-258)

                                     10        20        30        
pF1KB6                       MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLEL
                                 .:.. :.. .   .: .  . : .        ::
CCDS53 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
               10        20        30        40        50        60

       40        50        60        70        80        90        
pF1KB6 MKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGV
       ... :.:   . ..:  ...     . ::  .. .::  ..   ..:  . ::. :.::.
CCDS53 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQ---ITTGSKELDKLLQGGI
               70        80        90       100          110       

      100       110       120       130       140       150        
pF1KB6 ACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAES
         ::.::. :    ::::.:  ...   :: . :: :: ..:::::..:  :::. .:: 
CCDS53 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE-
       120       130       140       150       160       170       

      160       170       180       190       200       210        
pF1KB6 RFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRK
          ::  .   .:   ..:   : .. :.  : . .    .. .   :.:.::.... : 
CCDS53 ---RYGLSGSDVL---DNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT
           180          190       200       210       220       230

      220       230       240       250       260       270        
pF1KB6 EFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPAD
       ....  .:.:. :.  :::    :  ::.:                              
CCDS53 DYSG--RGELSARQMHLARFLRMLLRLADEIVSEERKRGNQNLQNLRLSLSS        
                240       250       260       270       280        

>>CCDS10062.1 RAD51 gene_id:5888|Hs108|chr15              (339 aa)
 initn: 356 init1: 211 opt: 260  Z-score: 319.9  bits: 67.8 E(32554): 1.7e-11
Smith-Waterman score: 386; 27.5% identity (55.6% similar) in 338 aa overlap (5-342:27-334)

                                     10        20        30        
pF1KB6                       MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLEL
                                 .:.. :.. .   .: .  . : .        ::
CCDS10 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
               10        20        30        40        50        60

       40        50        60        70        80        90        
pF1KB6 MKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGV
       ... :.:   . ..:  ...     . ::  .. .::  ..   ..:  . ::. :.::.
CCDS10 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQ---ITTGSKELDKLLQGGI
               70        80        90       100          110       

      100       110       120       130       140       150        
pF1KB6 ACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAES
         ::.::. :    ::::.:  ...   :: . :: :: ..:::::..:  :::. .:: 
CCDS10 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE-
       120       130       140       150       160       170       

      160       170       180       190       200       210        
pF1KB6 RFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRK
          ::  .   .:   ..:   : .. :.  : . .    .. .   :.:.::.... : 
CCDS10 ---RYGLSGSDVL---DNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT
           180          190       200       210       220       230

      220       230       240       250       260       270        
pF1KB6 EFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPAD
       .....  :.:. :.  :::    :  ::.::.. :..:::......::    ::  .:  
CCDS10 DYSGR--GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIG
                240       250       260       270       280        

      280       290       300       310       320       330        
pF1KB6 DLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIK
                         ::  .:. .::: :.   .: :   :  ::  : .  ...:.
CCDS10 ------------------GNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN
                        290       300       310       320       330

      340       350       360       370       380    
pF1KB6 EEGLVLQETTFCSVTQAELNWAPEILPPQPPEQLGLQMCHHTQLIF
        .:.                                          
CCDS10 ADGVGDAKD                                     
                                                     

>>CCDS45646.1 RAD51D gene_id:5892|Hs108|chr17             (348 aa)
 initn: 262 init1: 115 opt: 250  Z-score: 307.4  bits: 65.5 E(32554): 8.4e-11
Smith-Waterman score: 282; 27.6% identity (55.1% similar) in 352 aa overlap (10-333:11-325)

                10        20        30        40          50       
pF1KB6  MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRG--VHEL--LCM
                 ::..:. . :  :.: :  :..  .  :. .  ::::.   .:    :  
CCDS45 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKTWRAHSSGNLGG
               10        20        30        40        50        60

          60        70         80                     90       100 
pF1KB6 VSRACAPKMQTAYGIK-AQRSADFSP---------AF----LSTTLSALDEALHGGVACG
       ..   .:  ..  :.. : ..: ..          ::     ... : ::. : .:.  :
CCDS45 LQLPQVPAGRSWSGVRNALKKAGLGHGGTDGLSLNAFDERGTAVSTSRLDKLLDAGLYTG
               70        80        90       100       110       120

             110       120       130        140       150       160
pF1KB6 SLTEITGPPGCGKTQFCIMMSILATLPTNMG-GLEGAVVYIDTESAFSAERLVEIAESRF
        .:::.: :: :::: :. :.      .:.. ::.  :.:.:......: ::... ... 
CCDS45 EVTEIVGGPGSGKTQVCLCMA------ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKT
              130       140             150       160       170    

              170       180       190        200         210       
pF1KB6 PRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIE-SLEEEII-SKG-IKLVILDSVASVVR
           .  : :   .  :: .  .   .:::... .. ...  :.: .:.:..:::..:: 
CCDS45 QDEEEQAEALRRIQV-VHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV-
          180        190       200       210       220       230   

       220       230       240       250       260        270      
pF1KB6 KEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHL-SGALASQADLVSP
          .  : :. .:   .. . :  :: ::..... :..::.::    :: :       .:
CCDS45 ---SPLLGGQQREGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRL-------KP
               240       250       260       270       280         

        280       290       300       310            320       330 
pF1KB6 ADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAPFT
       :                  :: .::   .::..:. ...      ::.  .:::   : :
CCDS45 A------------------LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQP-T
                              290       300       310       320    

             340       350       360       370       380    
pF1KB6 SFVYTIKEEGLVLQETTFCSVTQAELNWAPEILPPQPPEQLGLQMCHHTQLIF
       .:                                                   
CCDS45 GFQEMVDIGTWGTSEQSATLQGDQT                            
           330       340                                    




384 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 08:06:45 2016 done: Sat Nov  5 08:06:45 2016
 Total Scan time:  2.700 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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