Result of FASTA (ccds) for pF1KB5995
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5995, 577 aa
  1>>>pF1KB5995 577 - 577 aa - 577 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.4998+/-0.00129; mu= -5.5941+/- 0.078
 mean_var=483.5272+/-99.616, 0's: 0 Z-trim(114.3): 70  B-trim: 0 in 0/51
 Lambda= 0.058326
 statistics sampled from 14846 (14900) to 14846 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.756), E-opt: 0.2 (0.458), width:  16
 Scan time:  4.200

The best scores are:                                      opt bits E(32554)
CCDS14473.1 CSTF2 gene_id:1478|Hs108|chrX          ( 577) 3935 345.7   9e-95
CCDS7245.1 CSTF2T gene_id:23283|Hs108|chr10        ( 616) 2535 228.0 2.7e-59
CCDS78498.1 CSTF2 gene_id:1478|Hs108|chrX          ( 597) 2299 208.1 2.6e-53


>>CCDS14473.1 CSTF2 gene_id:1478|Hs108|chrX               (577 aa)
 initn: 3935 init1: 3935 opt: 3935  Z-score: 1814.9  bits: 345.7 E(32554): 9e-95
Smith-Waterman score: 3935; 100.0% identity (100.0% similar) in 577 aa overlap (1-577:1-577)

               10        20        30        40        50        60
pF1KB5 MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETIS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 PEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 IVDPEIALKILHRQTNIPTLIAGNPQPVHGAGPGSGSNVSMNQQNPQAPQAQSLGGMHVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 IVDPEIALKILHRQTNIPTLIAGNPQPVHGAGPGSGSNVSMNQQNPQAPQAQSLGGMHVN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 GAPPLMQASMQGGVPAPGQMPAAVTGPGPGSLAPGGGMQAQVGMPGSGPVSMERGQVPMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GAPPLMQASMQGGVPAPGQMPAAVTGPGPGSLAPGGGMQAQVGMPGSGPVSMERGQVPMQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 DPRAAMQRGSLPANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DPRAAMQRGSLPANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHVP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 GHESRGPPPHELRGGPLPEPRPLMAEPRGPMLDQRGPPLDGRGGRDPRGIDARGMEARAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GHESRGPPPHELRGGPLPEPRPLMAEPRGPMLDQRGPPLDGRGGRDPRGIDARGMEARAM
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 EARGLDARGLEARAMEARAMEARAMEARAMEARAMEVRGMEARGMDTRGPVPGPRGPIPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EARGLDARGLEARAMEARAMEARAMEARAMEARAMEVRGMEARGMDTRGPVPGPRGPIPS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 GMQGPSPINMGAVVPQGSRQVPVMQGTGMQGASIQGGSQPGGFSPGQNQVTPQDHEKAAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GMQGPSPINMGAVVPQGSRQVPVMQGTGMQGASIQGGSQPGGFSPGQNQVTPQDHEKAAL
              490       500       510       520       530       540

              550       560       570       
pF1KB5 IMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAP
       :::::::::::::::::::::::::::::::::::::
CCDS14 IMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAP
              550       560       570       

>>CCDS7245.1 CSTF2T gene_id:23283|Hs108|chr10             (616 aa)
 initn: 1812 init1: 1221 opt: 2535  Z-score: 1177.9  bits: 228.0 E(32554): 2.7e-59
Smith-Waterman score: 2777; 69.4% identity (80.8% similar) in 625 aa overlap (1-570:1-609)

               10        20        30        40        50        60
pF1KB5 MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYG
       :..:.:::::.::::::::::::::::::::::::::::: :::::::::::::::::::
CCDS72 MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETIS
       ::::::::::::::::::::::::::::::::::::::::::::: .::.:.::::. :.
CCDS72 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPID
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 PEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMR
       ::::::::..:::::::::::::::::::::::: :::::::::::::::::::::::::
CCDS72 PEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMR
              130       140       150       160       170       180

              190       200             210         220       230  
pF1KB5 IVDPEIALKILHRQTNIPTLIAGNPQ------PVHGAGPG--SGSNVSMNQQNPQAPQAQ
       :.:::::::::::. ..  :: :. :      :  : :::   : :: .::::: ::: :
CCDS72 IMDPEIALKILHRKIHVTPLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQ
              190       200       210       220       230       240

            240       250       260       270       280       290  
pF1KB5 SLGGMHVNGAPPLMQASMQGGVPAPGQMPAAVTGPGPGSLAPGGGMQAQVGMPGSGPVSM
        :.   :.  :::::. .:::.:::: .:::: : :::::.:::.:: :.:::: ::: .
CCDS72 HLARRPVKDIPPLMQTPIQGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPL
              250       260       270       280       290       300

            300       310        320       330       340       350 
pF1KB5 ERGQVPMQDPRAAMQRGSL-PANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPH
       ::::: :.:::: . :: . :...: ::::::::::::::::::::::::::::::::::
CCDS72 ERGQVQMSDPRAPIPRGPVTPGGLP-PRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPH
              310       320        330       340       350         

             360       370       380       390       400       410 
pF1KB5 QGPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPMLDQRGPPLDGRGGRDPRGID
       :::::::. ::..:::  ::.::::: .:: :..::::::.:::: :.:::::::     
CCDS72 QGPPMHHASGHDTRGPSSHEMRGGPLGDPRLLIGEPRGPMIDQRGLPMDGRGGRD-----
     360       370       380       390       400       410         

             420       430       440       450       460       470 
pF1KB5 ARGMEARAMEARGLDARGLEARAMEARAMEARAMEARAMEARAMEVRGMEARGMDTRGPV
       .:.::.::::..          ..:.:.:: :.::. :::.:.::.:::.:::.. ::::
CCDS72 SRAMETRAMETE----------VLETRVMERRGMETCAMETRGMEARGMDARGLEMRGPV
          420                 430       440       450       460    

             480       490        500                      510     
pF1KB5 PGPRGPIPSGMQGPSPINMGAV-VPQGSRQVPVM---------------QGTGMQGASIQ
       :. :::. .:.:::.:::.::   ::: :::: .               ::::::::.::
CCDS72 PSSRGPMTGGIQGPGPINIGAGGPPQGPRQVPGISGVGNPGAGMQGTGIQGTGMQGAGIQ
          470       480       490       500       510       520    

                                       520       530       540     
pF1KB5 GG------------------------------SQPGGFSPGQNQVTPQDHEKAALIMQVL
       ::                              :::..:::::.::::::.::::::::::
CCDS72 GGGMQGAGIQGVSIQGGGIQGGGIQGASKQGGSQPSSFSPGQSQVTPQDQEKAALIMQVL
          530       540       550       560       570       580    

         550       560       570       
pF1KB5 QLTADQIAMLPPEQRQSILILKEQIQKSTGAP
       :::::::::::::::::::::::::       
CCDS72 QLTADQIAMLPPEQRQSILILKEQIQKSTGAS
          590       600       610      

>>CCDS78498.1 CSTF2 gene_id:1478|Hs108|chrX               (597 aa)
 initn: 2043 init1: 2043 opt: 2299  Z-score: 1070.7  bits: 208.1 E(32554): 2.6e-53
Smith-Waterman score: 3885; 96.6% identity (96.6% similar) in 597 aa overlap (1-577:1-597)

               10        20        30        40        50        60
pF1KB5 MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETIS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 PEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 IVDPEIALKILHRQTNIPTLIAGNPQPVHGAGPGSGSNVSMNQQNPQAPQAQSLGGMHVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 IVDPEIALKILHRQTNIPTLIAGNPQPVHGAGPGSGSNVSMNQQNPQAPQAQSLGGMHVN
              190       200       210       220       230       240

              250       260       270       280       290          
pF1KB5 GAPPLMQASMQGGVPAPGQMPAAVTGPGPGSLAPGGGMQAQVGMPGSGPVSMERGQ----
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::    
CCDS78 GAPPLMQASMQGGVPAPGQMPAAVTGPGPGSLAPGGGMQAQVGMPGSGPVSMERGQGTLQ
              250       260       270       280       290       300

                        300       310       320       330       340
pF1KB5 ----------------VPMQDPRAAMQRGSLPANVPTPRGLLGDAPNDPRGGTLLSVTGE
                       ::::::::::::::::::::::::::::::::::::::::::::
CCDS78 HSPVGPAGPASIERVQVPMQDPRAAMQRGSLPANVPTPRGLLGDAPNDPRGGTLLSVTGE
              310       320       330       340       350       360

              350       360       370       380       390       400
pF1KB5 VEPRGYLGPPHQGPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPMLDQRGPPLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 VEPRGYLGPPHQGPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPMLDQRGPPLD
              370       380       390       400       410       420

              410       420       430       440       450       460
pF1KB5 GRGGRDPRGIDARGMEARAMEARGLDARGLEARAMEARAMEARAMEARAMEARAMEVRGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GRGGRDPRGIDARGMEARAMEARGLDARGLEARAMEARAMEARAMEARAMEARAMEVRGM
              430       440       450       460       470       480

              470       480       490       500       510       520
pF1KB5 EARGMDTRGPVPGPRGPIPSGMQGPSPINMGAVVPQGSRQVPVMQGTGMQGASIQGGSQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 EARGMDTRGPVPGPRGPIPSGMQGPSPINMGAVVPQGSRQVPVMQGTGMQGASIQGGSQP
              490       500       510       520       530       540

              530       540       550       560       570       
pF1KB5 GGFSPGQNQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GGFSPGQNQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAP
              550       560       570       580       590       




577 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 10:52:52 2016 done: Sat Nov  5 10:52:52 2016
 Total Scan time:  4.200 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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