Result of FASTA (ccds) for pF1KB6521
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6521, 363 aa
  1>>>pF1KB6521 363 - 363 aa - 363 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9012+/-0.000882; mu= 13.4123+/- 0.053
 mean_var=81.2246+/-15.836, 0's: 0 Z-trim(107.0): 28  B-trim: 0 in 0/52
 Lambda= 0.142308
 statistics sampled from 9310 (9331) to 9310 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.287), width:  16
 Scan time:  2.330

The best scores are:                                      opt bits E(32554)
CCDS3283.1 RFC4 gene_id:5984|Hs108|chr3            ( 363) 2321 486.3 1.8e-137
CCDS9185.1 RFC5 gene_id:5985|Hs108|chr12           ( 340)  738 161.2 1.2e-39
CCDS41843.2 RFC5 gene_id:5985|Hs108|chr12          ( 319)  706 154.7   1e-37
CCDS5568.1 RFC2 gene_id:5982|Hs108|chr7            ( 354)  673 147.9 1.2e-35
CCDS75618.1 RFC2 gene_id:5982|Hs108|chr7           ( 251)  443 100.6 1.5e-21
CCDS5567.1 RFC2 gene_id:5982|Hs108|chr7            ( 320)  349 81.4 1.2e-15


>>CCDS3283.1 RFC4 gene_id:5984|Hs108|chr3                 (363 aa)
 initn: 2321 init1: 2321 opt: 2321  Z-score: 2581.6  bits: 486.3 E(32554): 1.8e-137
Smith-Waterman score: 2321; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363)

               10        20        30        40        50        60
pF1KB6 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 HAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLS
              310       320       330       340       350       360

          
pF1KB6 QNC
       :::
CCDS32 QNC
          

>>CCDS9185.1 RFC5 gene_id:5985|Hs108|chr12                (340 aa)
 initn: 714 init1: 388 opt: 738  Z-score: 825.6  bits: 161.2 E(32554): 1.2e-39
Smith-Waterman score: 738; 39.6% identity (70.7% similar) in 321 aa overlap (34-353:16-327)

            10        20        30        40        50        60   
pF1KB6 FLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLK
                                     : . .::::::::. ....  .........
CCDS91                METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQ
                              10        20        30        40     

            70        80        90       100       110       120   
pF1KB6 KSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKV
       : ..   ::.::.:::::::::::::: :..:.  . :   ::::::::.:::...:  .
CCDS91 KFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPI
          50        60        70        80        90       100     

           130       140       150       160       170       180   
pF1KB6 KNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYV
        .::.     .:.  :    ::.:::::::.::. :: ::::..:: ...:::::::::.
CCDS91 LSFAS-----TRTIFKK--GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL
         110              120       130       140       150        

           190       200       210       220       230       240   
pF1KB6 SRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAIT
       :.::  : :::..::: ::. ...  ::  ....:.: ::..:.  :: .: ::.:.:..
CCDS91 SKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALN
      160       170       180       190       200       210        

           250       260       270       280       290        300  
pF1KB6 FLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLID-EGHA
       .::: : .. :: .::...   .:      : ...    . .:      . .:   .: :
CCDS91 ILQS-TNMAFGK-VTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLA
      220         230       240       250       260       270      

            310       320       330       340       350       360  
pF1KB6 ATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLSQN
         ......:  : . .. .. .  .  :.:...  :. :..:..:: :: :         
CCDS91 LHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLI
        280       290       300       310       320       330      

           
pF1KB6 C   
           
CCDS91 VAEA
        340

>>CCDS41843.2 RFC5 gene_id:5985|Hs108|chr12               (319 aa)
 initn: 682 init1: 388 opt: 706  Z-score: 790.5  bits: 154.7 E(32554): 1e-37
Smith-Waterman score: 706; 39.5% identity (70.7% similar) in 314 aa overlap (41-353:2-306)

               20        30        40        50        60        70
pF1KB6 STKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD
                                     ::::::. ....  .........: ..   
CCDS41                              MVEKYRPQTLNDLISHQDILSTIQKFINEDR
                                            10        20        30 

               80        90       100       110       120       130
pF1KB6 LPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLT
       ::.::.:::::::::::::: :..:.  . :   ::::::::.:::...:  . .::   
CCDS41 LPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFA---
              40        50        60        70        80           

              140       150       160       170       180       190
pF1KB6 VSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPL
         ..:.  :    ::.:::::::.::. :: ::::..:: ...:::::::::.:.::  :
CCDS41 --STRTIFKK--GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPAL
         90         100       110       120       130       140    

              200       210       220       230       240       250
pF1KB6 TSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATR
        :::..::: ::. ...  ::  ....:.: ::..:.  :: .: ::.:.:...::: : 
CCDS41 QSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQS-TN
          150       160       170       180       190       200    

              260       270       280       290        300         
pF1KB6 LTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLID-EGHAATQLVNQ
       .. :: .::...   .:      : ...    . .:      . .:   .: :  .....
CCDS41 MAFGK-VTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTE
            210       220       230       240       250       260  

     310       320       330       340       350       360      
pF1KB6 LHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLSQNC   
       .:  : . .. .. .  .  :.:...  :. :..:..:: :: :             
CCDS41 IHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
            270       280       290       300       310         

>>CCDS5568.1 RFC2 gene_id:5982|Hs108|chr7                 (354 aa)
 initn: 639 init1: 347 opt: 673  Z-score: 753.2  bits: 147.9 E(32554): 1.2e-35
Smith-Waterman score: 676; 37.1% identity (67.1% similar) in 334 aa overlap (27-358:29-347)

                 10        20        30        40        50        
pF1KB6   MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEV
                                   ::.:. .    .::::::::  ..:.. .:..
CCDS55 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYE----LPWVEKYRPVKLNEIVGNEDT
               10        20        30            40        50      

       60        70        80        90       100       110        
pF1KB6 VAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQV
       :. :.   . ...::... ::::::::..::  :: :.:: : .  .::::::..:::.:
CCDS55 VSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL-KDAMLELNASNDRGIDV
         60        70        80        90        100       110     

      120       130       140       150       160       170        
pF1KB6 VREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCL
       ::.:.: :::  :.  .  :.     ::.:::::::::..:: :::::::  :::::: :
CCDS55 VRNKIKMFAQQKVTLPK--GR----HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFAL
         120       130             140       150       160         

      180       190       200       210       220       230        
pF1KB6 ICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDL
        ::  ..::::. :::. .:.  :.:     ::... .:: :  .:.:.  .. ...::.
CCDS55 ACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDM
     170       180       190       200       210       220         

      240       250         260       270       280       290      
pF1KB6 RKAITFLQSATRLTG--GKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDL
       :.:.. :::.    :  ..: . ::  .   ..  : :.     : ....:.   ..  :
CCDS55 RQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQH----CVNANIDEAYKILAHL
     230       240       250       260           270       280     

        300       310       320       330       340       350      
pF1KB6 IDEGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVM
          :..  ......  :    ....  :  . .... .   .:.:..  ::. .: : . 
CCDS55 WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLC
         290       300       310       320       330       340     

        360     
pF1KB6 QQLSQNC  
       :.       
CCDS55 QKTMAPVAS
         350    

>>CCDS75618.1 RFC2 gene_id:5982|Hs108|chr7                (251 aa)
 initn: 408 init1: 347 opt: 443  Z-score: 500.2  bits: 100.6 E(32554): 1.5e-21
Smith-Waterman score: 443; 33.1% identity (62.9% similar) in 248 aa overlap (111-358:5-244)

               90       100       110       120       130       140
pF1KB6 GTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKP
                                     :. :::.:::.:.: :::  :.       :
CCDS75                           MCPTSSLRGIDVVRNKIKMFAQQKVT------LP
                                         10        20              

              150       160       170       180       190       200
pF1KB6 CPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFK
           ::.:::::::::..:: :::::::  :::::: : ::  ..::::. :::. .:. 
CCDS75 KGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYT
       30        40        50        60        70        80        

              210       220       230       240       250       260
pF1KB6 PLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEK
        :.:     ::... .:: :  .:.:.  .. ...::.:.:.. :::.  ..:   :. .
CCDS75 KLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQST--FSGFGFINSE
       90       100       110       120       130         140      

              270       280       290       300       310       320
pF1KB6 VITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLS
        .  .        .  ..  : ....:.   ..  :   :..  ......  :    ...
CCDS75 NVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMA
        150       160       170       180       190       200      

              330       340       350       360     
pF1KB6 DKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLSQNC  
       .  :  . .... .   .:.:..  ::. .: : . :.       
CCDS75 EYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
        210       220       230       240       250 

>>CCDS5567.1 RFC2 gene_id:5982|Hs108|chr7                 (320 aa)
 initn: 498 init1: 303 opt: 349  Z-score: 394.3  bits: 81.4 E(32554): 1.2e-15
Smith-Waterman score: 489; 31.1% identity (58.7% similar) in 334 aa overlap (27-358:29-313)

                 10        20        30        40        50        
pF1KB6   MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEV
                                   ::.:. .    .::::::::  ..:.. .:..
CCDS55 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYE----LPWVEKYRPVKLNEIVGNEDT
               10        20        30            40        50      

       60        70        80        90       100       110        
pF1KB6 VAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQV
       :. :.   . ...::... ::::::::..::  :: :.:: : .  .::::::.      
CCDS55 VSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL-KDAMLELNASN------
         60        70        80        90        100               

      120       130       140       150       160       170        
pF1KB6 VREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCL
                                         ::::..:: :::::::  :::::: :
CCDS55 ----------------------------------DSMTDGAQQALRRTMEIYSKTTRFAL
                                       110       120       130     

      180       190       200       210       220       230        
pF1KB6 ICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDL
        ::  ..::::. :::. .:.  :.:     ::... .:: :  .:.:.  .. ...::.
CCDS55 ACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDM
         140       150       160       170       180       190     

      240       250         260       270       280       290      
pF1KB6 RKAITFLQSATRLTG--GKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDL
       :.:.. :::.    :  ..: . ::  .   ..  : :.     : ....:.   ..  :
CCDS55 RQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQH----CVNANIDEAYKILAHL
         200       210       220       230           240       250 

        300       310       320       330       340       350      
pF1KB6 IDEGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVM
          :..  ......  :    ....  :  . .... .   .:.:..  ::. .: : . 
CCDS55 WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLC
             260       270       280       290       300       310 

        360     
pF1KB6 QQLSQNC  
       :.       
CCDS55 QKTMAPVAS
             320




363 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:13:03 2016 done: Sat Nov  5 04:13:03 2016
 Total Scan time:  2.330 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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