Result of FASTA (omim) for pF1KB3085
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3085, 211 aa
  1>>>pF1KB3085 211 - 211 aa - 211 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4838+/-0.000315; mu= 19.6901+/- 0.020
 mean_var=73.8817+/-14.388, 0's: 0 Z-trim(117.2): 58  B-trim: 0 in 0/53
 Lambda= 0.149213
 statistics sampled from 28903 (28968) to 28903 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.34), width:  16
 Scan time:  6.320

The best scores are:                                      opt bits E(85289)
NP_066924 (OMIM: 603718,607626) claudin-1 [Homo sa ( 211) 1419 313.9 1.2e-85
NP_001298 (OMIM: 609131) claudin-7 isoform 1 precu ( 211)  925 207.6 1.3e-53
NP_001171951 (OMIM: 609131) claudin-7 isoform 1 pr ( 211)  925 207.6 1.3e-53
NP_001116867 (OMIM: 248190,610036) claudin-19 isof ( 211)  887 199.4 3.7e-51
NP_683763 (OMIM: 248190,610036) claudin-19 isoform ( 224)  881 198.1 9.3e-51
NP_001297 (OMIM: 602910) claudin-3 [Homo sapiens]  ( 220)  734 166.5 3.1e-41
NP_001296 (OMIM: 602909) claudin-4 [Homo sapiens]  ( 209)  729 165.4 6.3e-41
NP_066192 (OMIM: 615799) claudin-9 [Homo sapiens]  ( 217)  727 164.9 8.7e-41
NP_067018 (OMIM: 615798) claudin-6 precursor [Homo ( 220)  685 155.9 4.6e-38
NP_001124333 (OMIM: 602101) claudin-5 [Homo sapien ( 303)  684 155.8 6.6e-38
XP_016884418 (OMIM: 602101) PREDICTED: claudin-5 i ( 303)  684 155.8 6.6e-38
NP_003268 (OMIM: 602101) claudin-5 [Homo sapiens]  ( 303)  684 155.8 6.6e-38
XP_016884419 (OMIM: 602101) PREDICTED: claudin-5 i ( 303)  684 155.8 6.6e-38
NP_652763 (OMIM: 605608,614035) claudin-14 [Homo s ( 239)  649 148.2 1.1e-35
NP_001139549 (OMIM: 605608,614035) claudin-14 [Hom ( 239)  649 148.2 1.1e-35
NP_001139550 (OMIM: 605608,614035) claudin-14 [Hom ( 239)  649 148.2 1.1e-35
NP_001139551 (OMIM: 605608,614035) claudin-14 [Hom ( 239)  649 148.2 1.1e-35
NP_036262 (OMIM: 605608,614035) claudin-14 [Homo s ( 239)  649 148.2 1.1e-35
NP_001171952 (OMIM: 609131) claudin-7 isoform 2 pr ( 145)  619 141.5 6.6e-34
NP_001172046 (OMIM: 248190,610036) claudin-19 isof ( 218)  608 139.3 4.5e-33
NP_036263 (OMIM: 617005) claudin-17 [Homo sapiens] ( 224)  602 138.0 1.1e-32
NP_955360 (OMIM: 611231) claudin-8 [Homo sapiens]  ( 225)  588 135.0 9.1e-32
NP_065117 (OMIM: 300520) claudin-2 [Homo sapiens]  ( 230)  529 122.3 6.1e-28
NP_001164563 (OMIM: 300520) claudin-2 [Homo sapien ( 230)  529 122.3 6.1e-28
NP_001164566 (OMIM: 300520) claudin-2 [Homo sapien ( 230)  529 122.3 6.1e-28
NP_055158 (OMIM: 615778) claudin-15 [Homo sapiens] ( 228)  479 111.6 1.1e-24
NP_001172009 (OMIM: 615778) claudin-15 [Homo sapie ( 228)  479 111.6 1.1e-24
NP_005593 (OMIM: 601326) claudin-11 isoform 1 [Hom ( 207)  379 90.0   3e-18
NP_001002026 (OMIM: 609210) claudin-18 isoform 2 [ ( 261)  355 85.0 1.3e-16
NP_057453 (OMIM: 609210) claudin-18 isoform 1 prec ( 261)  355 85.0 1.3e-16
NP_006571 (OMIM: 248250,603959) claudin-16 [Homo s ( 305)  280 68.9   1e-11
NP_919260 (OMIM: 609203) claudin-23 [Homo sapiens] ( 292)  245 61.3 1.8e-09
NP_001171985 (OMIM: 601326) claudin-11 isoform 2 p ( 123)  191 49.3 3.2e-06
NP_665810 (OMIM: 606405) voltage-dependent calcium ( 275)  151 41.1  0.0022
NP_001172002 (OMIM: 611232) claudin-12 [Homo sapie ( 244)  149 40.6  0.0027
NP_036261 (OMIM: 611232) claudin-12 [Homo sapiens] ( 244)  149 40.6  0.0027
NP_001172001 (OMIM: 611232) claudin-12 [Homo sapie ( 244)  149 40.6  0.0027


>>NP_066924 (OMIM: 603718,607626) claudin-1 [Homo sapien  (211 aa)
 initn: 1419 init1: 1419 opt: 1419  Z-score: 1658.5  bits: 313.9 E(85289): 1.2e-85
Smith-Waterman score: 1419; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211)

               10        20        30        40        50        60
pF1KB3 MANAGLQLLGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQAMYEGLWMSCVSQSTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MANAGLQLLGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQAMYEGLWMSCVSQSTG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QIQCKVFDSLLNLSSTLQATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 QIQCKVFDSLLNLSSTLQATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 IGGAIFLLAGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 IGGAIFLLAGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGA
              130       140       150       160       170       180

              190       200       210 
pF1KB3 LLCCSCPRKTTSYPTPRPYPKPAPSSGKDYV
       :::::::::::::::::::::::::::::::
NP_066 LLCCSCPRKTTSYPTPRPYPKPAPSSGKDYV
              190       200       210 

>>NP_001298 (OMIM: 609131) claudin-7 isoform 1 precursor  (211 aa)
 initn: 910 init1: 910 opt: 925  Z-score: 1083.7  bits: 207.6 E(85289): 1.3e-53
Smith-Waterman score: 925; 60.6% identity (86.4% similar) in 213 aa overlap (1-211:1-211)

               10        20        30        40        50        60
pF1KB3 MANAGLQLLGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQAMYEGLWMSCVSQSTG
       :::.::::::: .:.:::.: .. ::.:::.. :::::::.::::::.::::.::.::::
NP_001 MANSGLQLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QIQCKVFDSLLNLSSTLQATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMAV
       ...::..::.: ::..::::::::::...:: .:.::::.:::: .:  ::.:.: :.:.
NP_001 MMSCKMYDSVLALSAALQATRALMVVSLVLGFLAMFVATMGMKCTRCGGDDKVKKARIAM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 IGGAIFLLAGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGA
        :: ::..:::: ::: .:::..:: .::.:. :.: .:::: :.: :::...: .::::
NP_001 GGGIIFIVAGLAALVACSWYGHQIVTDFYNPLIPTNIKYEFGPAIFIGWAGSALVILGGA
              130       140       150       160       170       180

                190       200       210 
pF1KB3 LLCCSCP--RKTTSYPTPRPYPKPAPSSGKDYV
       :: ::::  .. ..: .:: :::   .:.:.::
NP_001 LLSCSCPGNESKAGYRVPRSYPKS--NSSKEYV
              190       200         210 

>>NP_001171951 (OMIM: 609131) claudin-7 isoform 1 precur  (211 aa)
 initn: 910 init1: 910 opt: 925  Z-score: 1083.7  bits: 207.6 E(85289): 1.3e-53
Smith-Waterman score: 925; 60.6% identity (86.4% similar) in 213 aa overlap (1-211:1-211)

               10        20        30        40        50        60
pF1KB3 MANAGLQLLGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQAMYEGLWMSCVSQSTG
       :::.::::::: .:.:::.: .. ::.:::.. :::::::.::::::.::::.::.::::
NP_001 MANSGLQLLGFSMALLGWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QIQCKVFDSLLNLSSTLQATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMAV
       ...::..::.: ::..::::::::::...:: .:.::::.:::: .:  ::.:.: :.:.
NP_001 MMSCKMYDSVLALSAALQATRALMVVSLVLGFLAMFVATMGMKCTRCGGDDKVKKARIAM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 IGGAIFLLAGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGA
        :: ::..:::: ::: .:::..:: .::.:. :.: .:::: :.: :::...: .::::
NP_001 GGGIIFIVAGLAALVACSWYGHQIVTDFYNPLIPTNIKYEFGPAIFIGWAGSALVILGGA
              130       140       150       160       170       180

                190       200       210 
pF1KB3 LLCCSCP--RKTTSYPTPRPYPKPAPSSGKDYV
       :: ::::  .. ..: .:: :::   .:.:.::
NP_001 LLSCSCPGNESKAGYRVPRSYPKS--NSSKEYV
              190       200         210 

>>NP_001116867 (OMIM: 248190,610036) claudin-19 isoform   (211 aa)
 initn: 876 init1: 876 opt: 887  Z-score: 1039.5  bits: 199.4 E(85289): 3.7e-51
Smith-Waterman score: 887; 57.1% identity (85.4% similar) in 212 aa overlap (1-211:1-211)

               10        20        30        40        50        60
pF1KB3 MANAGLQLLGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQAMYEGLWMSCVSQSTG
       :::.::::::..::. ::.: :.:::::::.  ::::: :.:: ..::::::::.:::::
NP_001 MANSGLQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QIQCKVFDSLLNLSSTLQATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMAV
       :.:::..:::: :.. .:..::::::..::: .:. ...::::: .  ... . : :.:.
NP_001 QVQCKLYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPIAKGRVAI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 IGGAIFLLAGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGA
        :::.:.::::  :.:..::.. ..:::..: :::::::::: :::.:::.:.: .:::.
NP_001 AGGALFILAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAVLGGS
              130       140       150       160       170       180

              190       200        210 
pF1KB3 LLCCSCPRKTTSYPTPRPYPKPAPSSG-KDYV
       .:::.::.      .:.:: .:.::.. ..::
NP_001 FLCCTCPEPERPNSSPQPY-RPGPSAAAREYV
              190        200       210 

>>NP_683763 (OMIM: 248190,610036) claudin-19 isoform a [  (224 aa)
 initn: 864 init1: 864 opt: 881  Z-score: 1032.2  bits: 198.1 E(85289): 9.3e-51
Smith-Waterman score: 881; 57.8% identity (85.4% similar) in 206 aa overlap (1-206:1-205)

               10        20        30        40        50        60
pF1KB3 MANAGLQLLGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQAMYEGLWMSCVSQSTG
       :::.::::::..::. ::.: :.:::::::.  ::::: :.:: ..::::::::.:::::
NP_683 MANSGLQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QIQCKVFDSLLNLSSTLQATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMAV
       :.:::..:::: :.. .:..::::::..::: .:. ...::::: .  ... . : :.:.
NP_683 QVQCKLYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPIAKGRVAI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 IGGAIFLLAGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGA
        :::.:.::::  :.:..::.. ..:::..: :::::::::: :::.:::.:.: .:::.
NP_683 AGGALFILAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAVLGGS
              130       140       150       160       170       180

              190       200       210               
pF1KB3 LLCCSCPRKTTSYPTPRPYPKPAPSSGKDYV              
       .:::.::.      .:.:: .:.::.                   
NP_683 FLCCTCPEPERPNSSPQPY-RPGPSAAAREPVVKLPASAKGPLGV
              190        200       210       220    

>>NP_001297 (OMIM: 602910) claudin-3 [Homo sapiens]       (220 aa)
 initn: 745 init1: 467 opt: 734  Z-score: 861.3  bits: 166.5 E(85289): 3.1e-41
Smith-Waterman score: 735; 50.2% identity (77.2% similar) in 219 aa overlap (5-211:4-220)

               10        20        30        40        50        60
pF1KB3 MANAGLQLLGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQAMYEGLWMSCVSQSTG
           ::.. :  :: :::.:.::  :::.::. .. :.::.:.: ..:::::.:: ::::
NP_001  MSMGLEITGTALAVLGWLGTIVCCALPMWRVSAFIGSNIITSQNIWEGLWMNCVVQSTG
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB3 QIQCKVFDSLLNLSSTLQATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMAV
       :.::::.:::: : . :::.:::.::.:::......:: :: .: .:..:: . : ....
NP_001 QMQCKVYDSLLALPQDLQAARALIVVAILLAAFGLLVALVGAQCTNCVQDDTA-KAKITI
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB3 IGGAIFLLAGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGA
       ..:..::::.:  :: ..: .: :...::.:..:   . :.: .:..:::::.: :::::
NP_001 VAGVLFLLAALLTLVPVSWSANTIIRDFYNPVVPEAQKREMGAGLYVGWAAAALQLLGGA
      120       130       140       150       160       170        

                 190           200            210 
pF1KB3 LLCCSCP---RKTTS----YPTPRPYPKPAPSSG-----KDYV
       :::::::   .: :.    : .::    :. : :     ::::
NP_001 LLCCSCPPREKKYTATKVVYSAPRS-TGPGASLGTGYDRKDYV
      180       190       200        210       220

>>NP_001296 (OMIM: 602909) claudin-4 [Homo sapiens]       (209 aa)
 initn: 822 init1: 488 opt: 729  Z-score: 855.8  bits: 165.4 E(85289): 6.3e-41
Smith-Waterman score: 729; 46.0% identity (80.6% similar) in 211 aa overlap (1-211:1-209)

               10        20        30        40        50        60
pF1KB3 MANAGLQLLGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQAMYEGLWMSCVSQSTG
       ::. :::..:. :: :::.....  :::.::. .. :.::::.:...:::::.:: ::::
NP_001 MASMGLQVMGIALAVLGWLAVMLCCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QIQCKVFDSLLNLSSTLQATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMAV
       :.::::.:::: : . :::.:::....:...........:: :: .:::: :  : .  .
NP_001 QMQCKVYDSLLALPQDLQAARALVIISIIVAALGVLLSVVGGKCTNCLED-ESAKAKTMI
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KB3 IGGAIFLLAGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGA
       ..:..:::::: ..: ..: .. :.:.::.:..  . . :.: .:..::::..: ::::.
NP_001 VAGVVFLLAGLMVIVPVSWTAHNIIQDFYNPLVASGQKREMGASLYVGWAASGLLLLGGG
     120       130       140       150       160       170         

              190       200       210 
pF1KB3 LLCCSCPRKTTSYPTPRPYPKPAPSSGKDYV
       ::::.:: .: . :    :     .....::
NP_001 LLCCNCPPRTDK-PYSAKYSAARSAAASNYV
     180       190        200         

>>NP_066192 (OMIM: 615799) claudin-9 [Homo sapiens]       (217 aa)
 initn: 475 init1: 475 opt: 727  Z-score: 853.2  bits: 164.9 E(85289): 8.7e-41
Smith-Waterman score: 727; 49.1% identity (77.1% similar) in 218 aa overlap (1-211:1-217)

               10        20        30        40        50        60
pF1KB3 MANAGLQLLGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQAMYEGLWMSCVSQSTG
       ::..::.:::. :: :::.:..:: ::: :.. .. :..::.::...:::::::: ::::
NP_066 MASTGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QIQCKVFDSLLNLSSTLQATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMAV
       :.::::.:::: : . :::.::: :...::......:: .: .:  :.:: :  : :...
NP_066 QMQCKVYDSLLALPQDLQAARALCVIALLLALLGLLVAITGAQCTTCVED-EGAKARIVL
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KB3 IGGAIFLLAGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGA
        .:.:.::::. .:. . : .. :.:.::.:..    . :.: .:. :::::.: .:::.
NP_066 TAGVILLLAGILVLIPVCWTAHAIIQDFYNPLVAEALKRELGASLYLGWAAAALLMLGGG
     120       130       140       150       160       170         

              190         200            210 
pF1KB3 LLCCSCPRKTTSYPT-PR-PYPKPAPS--SG---KDYV
       ::::.::   .  :  ::  :  :. :  ::   .:::
NP_066 LLCCTCPPPQVERPRGPRLGYSIPSRSGASGLDKRDYV
     180       190       200       210       

>>NP_067018 (OMIM: 615798) claudin-6 precursor [Homo sap  (220 aa)
 initn: 462 init1: 441 opt: 685  Z-score: 804.3  bits: 155.9 E(85289): 4.6e-38
Smith-Waterman score: 685; 44.0% identity (78.3% similar) in 207 aa overlap (1-205:1-206)

               10        20        30        40        50        60
pF1KB3 MANAGLQLLGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQAMYEGLWMSCVSQSTG
       ::.::.:.:: .:..:::....:: :::.:.. .. :..::.::...:::::::: ::::
NP_067 MASAGMQILGVVLTLLGWVNGLVSCALPMWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QIQCKVFDSLLNLSSTLQATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMAV
       :.::::.:::: : . :::.::: :...:.......:  .: ::  :.:. . .: :...
NP_067 QMQCKVYDSLLALPQDLQAARALCVIALLVALFGLLVYLAGAKCTTCVEEKD-SKARLVL
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KB3 IGGAIFLLAGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGA
        .: .:...:.  :. . : .. :...::.:..    . :.: .:. ::::..: ::::.
NP_067 TSGIVFVISGVLTLIPVCWTAHAIIRDFYNPLVAEAQKRELGASLYLGWAASGLLLLGGG
     120       130       140       150       160       170         

              190         200       210         
pF1KB3 LLCCSCPRKTTSYPTPRP--YPKPAPSSGKDYV        
       ::::.::   .. :.     :   ::.              
NP_067 LLCCTCPSGGSQGPSHYMARYSTSAPAISRGPSEYPTKNYV
     180       190       200       210       220

>>NP_001124333 (OMIM: 602101) claudin-5 [Homo sapiens]    (303 aa)
 initn: 662 init1: 397 opt: 684  Z-score: 801.5  bits: 155.8 E(85289): 6.6e-38
Smith-Waterman score: 684; 45.3% identity (74.3% similar) in 214 aa overlap (1-210:86-297)

                                             10        20        30
pF1KB3                               MANAGLQLLGFILAFLGWIGAIVSTALPQW
                                     :..:.:..::..: ..:: : :.. .::.:
NP_001 GAKAPGPAQGAAQHGLGGSAGLRVRVSPLAMGSAALEILGLVLCLVGWGGLILACGLPMW
          60        70        80        90       100       110     

               40        50        60        70        80        90
pF1KB3 RIYSYAGDNIVTAQAMYEGLWMSCVSQSTGQIQCKVFDSLLNLSSTLQATRALMVVGILL
       .. ..   ::::::. ..::::::: ::::..::::.::.: ::. .::.::: : ..::
NP_001 QVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKVYDSVLALSTEVQAARALTVSAVLL
         120       130       140       150       160       170     

              100       110       120       130       140       150
pF1KB3 GVIAIFVATVGMKCMKCLEDDEVQKMRMAVIGGAIFLLAGLAILVATAWYGNRIVQEFYD
       . .:.::. .: .:  :.    . : :.:. ::...:. ::  ::   :..: .:.::::
NP_001 AFVALFVTLAGAQCTTCVAPGPA-KARVALTGGVLYLFCGLLALVPLCWFANIVVREFYD
         180       190        200       210       220       230    

              160       170       180           190       200      
pF1KB3 PMTPVNARYEFGQALFTGWAAASLCLLGGALLCCS---CP-RKTTSYPTPRPYPKPAPSS
       : .::. .::.: ::. ::::..: ..:: ::::.   :  :   :.:.    :.  :..
NP_001 PSVPVSQKYELGAALYIGWAATALLMVGGCLLCCGAWVCTGRPDLSFPVKYSAPR-RPTA
          240       250       260       270       280        290   

        210      
pF1KB3 GKDYV     
         ::      
NP_001 TGDYDKKNYV
           300   




211 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:50:02 2016 done: Sat Nov  5 04:50:03 2016
 Total Scan time:  6.320 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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