Result of FASTA (omim) for pF1KB5543
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5543, 346 aa
  1>>>pF1KB5543 346 - 346 aa - 346 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4337+/-0.000352; mu= 15.6208+/- 0.022
 mean_var=66.3398+/-13.527, 0's: 0 Z-trim(114.4): 29  B-trim: 1188 in 1/55
 Lambda= 0.157466
 statistics sampled from 24259 (24287) to 24259 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.285), width:  16
 Scan time:  7.990

The best scores are:                                      opt bits E(85289)
NP_000018 (OMIM: 208400,613228) N(4)-(beta-N-acety ( 346) 2347 541.9 7.4e-154
NP_001165459 (OMIM: 208400,613228) N(4)-(beta-N-ac ( 336) 1537 357.9 1.8e-98
NP_060184 (OMIM: 608270) threonine aspartase 1 iso ( 420)  274 71.0 5.1e-12
XP_011527596 (OMIM: 608270) PREDICTED: threonine a ( 318)  236 62.3 1.6e-09
NP_001310532 (OMIM: 608270) threonine aspartase 1  ( 318)  236 62.3 1.6e-09
XP_016883417 (OMIM: 608270) PREDICTED: threonine a ( 318)  236 62.3 1.6e-09
XP_011527594 (OMIM: 608270) PREDICTED: threonine a ( 318)  236 62.3 1.6e-09
XP_016883416 (OMIM: 608270) PREDICTED: threonine a ( 318)  236 62.3 1.6e-09
NP_001310533 (OMIM: 608270) threonine aspartase 1  ( 318)  236 62.3 1.6e-09
XP_016873843 (OMIM: 609212) PREDICTED: isoaspartyl ( 164)  208 55.8 7.5e-08
XP_011543568 (OMIM: 609212) PREDICTED: isoaspartyl ( 189)  208 55.9 8.4e-08
XP_011543567 (OMIM: 609212) PREDICTED: isoaspartyl ( 224)  208 55.9 9.8e-08
NP_001077395 (OMIM: 609212) isoaspartyl peptidase/ ( 308)  208 56.0 1.3e-07
NP_079356 (OMIM: 609212) isoaspartyl peptidase/L-a ( 308)  208 56.0 1.3e-07
XP_005274363 (OMIM: 609212) PREDICTED: isoaspartyl ( 180)  202 54.5 2.1e-07
XP_005274362 (OMIM: 609212) PREDICTED: isoaspartyl ( 180)  202 54.5 2.1e-07
XP_016883419 (OMIM: 608270) PREDICTED: threonine a ( 234)  167 46.6 6.4e-05
XP_016883420 (OMIM: 608270) PREDICTED: threonine a ( 225)  165 46.1 8.5e-05
XP_016883418 (OMIM: 608270) PREDICTED: threonine a ( 256)  165 46.2 9.5e-05
NP_001310531 (OMIM: 608270) threonine aspartase 1  ( 289)  162 45.5 0.00017


>>NP_000018 (OMIM: 208400,613228) N(4)-(beta-N-acetylglu  (346 aa)
 initn: 2347 init1: 2347 opt: 2347  Z-score: 2883.2  bits: 541.9 E(85289): 7.4e-154
Smith-Waterman score: 2347; 99.7% identity (100.0% similar) in 346 aa overlap (1-346:1-346)

               10        20        30        40        50        60
pF1KB5 MARKSNLPVLLVPFLLCQALVRCSSPLPLVVNTWPFKNATEAAWRALASGGSALDAVESG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MARKSNLPVLLVPFLLCQALVRCSSPLPLVVNTWPFKNATEAAWRALASGGSALDAVESG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 CAMCEREQCDGSVGFGGSPDELGETTLDAMIMDGTTMDVGAVGDLRRIKNAIGVARKVLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 CAMCEREQCDGSVGFGGSPDELGETTLDAMIMDGTTMDVGAVGDLRRIKNAIGVARKVLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 HTTHTLLVGESATTFAQSMGFINEDLSTSASQALHSDWLARNCQPNYWRNVIPDPSKYCG
       ::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
NP_000 HTTHTLLVGESATTFAQSMGFINEDLSTTASQALHSDWLARNCQPNYWRNVIPDPSKYCG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PYKPPGILKQDIPIHKETEDDRGHDTIGMVVIHKTGHIAAGTSTNGIKFKIHGRVGDSPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PYKPPGILKQDIPIHKETEDDRGHDTIGMVVIHKTGHIAAGTSTNGIKFKIHGRVGDSPI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 PGAGAYADDTAGAAAATGNGDILMRFLPSYQAVEYMRRGEDPTIACQKVISRIQKHFPEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PGAGAYADDTAGAAAATGNGDILMRFLPSYQAVEYMRRGEDPTIACQKVISRIQKHFPEF
              250       260       270       280       290       300

              310       320       330       340      
pF1KB5 FGAVICANVTGSYGAACNKLSTFTQFSFMVYNSEKNQPTEEKVDCI
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_000 FGAVICANVTGSYGAACNKLSTFTQFSFMVYNSEKNQPTEEKVDCI
              310       320       330       340      

>>NP_001165459 (OMIM: 208400,613228) N(4)-(beta-N-acetyl  (336 aa)
 initn: 1536 init1: 1536 opt: 1537  Z-score: 1888.9  bits: 357.9 E(85289): 1.8e-98
Smith-Waterman score: 2249; 96.8% identity (97.1% similar) in 346 aa overlap (1-346:1-336)

               10        20        30        40        50        60
pF1KB5 MARKSNLPVLLVPFLLCQALVRCSSPLPLVVNTWPFKNATEAAWRALASGGSALDAVESG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MARKSNLPVLLVPFLLCQALVRCSSPLPLVVNTWPFKNATEAAWRALASGGSALDAVESG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 CAMCEREQCDGSVGFGGSPDELGETTLDAMIMDGTTMDVGAVGDLRRIKNAIGVARKVLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CAMCEREQCDGSVGFGGSPDELGETTLDAMIMDGTTMDVGAVGDLRRIKNAIGVARKVLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 HTTHTLLVGESATTFAQSMGFINEDLSTSASQALHSDWLARNCQPNYWRNVIPDPSKYCG
       ::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
NP_001 HTTHTLLVGESATTFAQSMGFINEDLSTTASQALHSDWLARNCQPNYWRNVIPDPSKYCG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PYKPPGILKQDIPIHKETEDDRGHDTIGMVVIHKTGHIAAGTSTNGIKFKIHGRVGDSPI
       ::::::::::::::::::::::::::::::::::::::::::::::          ::::
NP_001 PYKPPGILKQDIPIHKETEDDRGHDTIGMVVIHKTGHIAAGTSTNG----------DSPI
              190       200       210       220                 230

              250       260       270       280       290       300
pF1KB5 PGAGAYADDTAGAAAATGNGDILMRFLPSYQAVEYMRRGEDPTIACQKVISRIQKHFPEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGAGAYADDTAGAAAATGNGDILMRFLPSYQAVEYMRRGEDPTIACQKVISRIQKHFPEF
              240       250       260       270       280       290

              310       320       330       340      
pF1KB5 FGAVICANVTGSYGAACNKLSTFTQFSFMVYNSEKNQPTEEKVDCI
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FGAVICANVTGSYGAACNKLSTFTQFSFMVYNSEKNQPTEEKVDCI
              300       310       320       330      

>>NP_060184 (OMIM: 608270) threonine aspartase 1 isoform  (420 aa)
 initn: 153 init1: 153 opt: 274  Z-score: 336.7  bits: 71.0 E(85289): 5.1e-12
Smith-Waterman score: 274; 28.3% identity (55.5% similar) in 272 aa overlap (37-297:66-327)

         10        20        30        40        50        60      
pF1KB5 LPVLLVPFLLCQALVRCSSPLPLVVNTWPFKNATEAAWRALASGGSALDAVESGCAMCER
                                     : : . : . : .:. : ::: .  :. : 
NP_060 YKEKRGGFVLVHAGAGYHSESKAKEYKHVCKRACQKAIEKLQAGALATDAVTA--ALVEL
          40        50        60        70        80          90   

         70         80        90       100       110        120    
pF1KB5 EQCD-GSVGFGGSPDELGETTLDAMIMDGTTMDVGAVGDLRRIKNAIGVARKVL-EHTTH
       :.    ..:.:.. . :::   :: :::: ... :::: :  ::: ..:: ..: :    
NP_060 EDSPFTNAGMGSNLNLLGEIECDASIMDGKSLNFGAVGALSGIKNPVSVANRLLCEGQKG
           100       110       120       130       140       150   

          130       140       150       160       170         180  
pF1KB5 TLLVGESATTFAQSMGFINEDLSTSASQALHSDWLARNCQPNYWRNV--IPDPSKYCGPY
        : .:.    :  . :     .. .  .   .   .:     . ::   .    .    .
NP_060 KLSAGRIPPCFLVGEGAYRWAVDHGIPSCPPNIMTTRFSLAAFKRNKRKLELAERVDTDF
           160       170       180       190       200       210   

            190       200        210       220       230       240 
pF1KB5 KPPGILKQDIPIHKETEDDRGH-DTIGMVVIHKTGHIAAGTSTNGIKFKIHGRVGDSPIP
             .:.    .: :.: :  ::.: ::. . :..::..:..:. .:  ::::.. . 
NP_060 MQLKKRRQS----SEKENDSGTLDTVGAVVVDHEGNVAAAVSSGGLALKHPGRVGQAALY
           220           230       240       250       260         

             250             260       270       280       290     
pF1KB5 GAGAYADDTAG------AAAATGNGDILMRFLPSYQAVEYMRRGEDPTIACQKVISRIQK
       : : .:..:..      :....: :. :.: . . .  . .. .::   : : ..  .:.
NP_060 GCGCWAENTGAHNPYSTAVSTSGCGEHLVRTILARECSHALQ-AED---AHQALLETMQN
     270       280       290       300       310           320     

         300       310       320       330       340               
pF1KB5 HFPEFFGAVICANVTGSYGAACNKLSTFTQFSFMVYNSEKNQPTEEKVDCI         
       .:                                                          
NP_060 KFISSPFLASEDGVLGGVIVLRSCRCSAEPDSSQNKQTLLVEFLWSHTTESMCVGYMSAQ
         330       340       350       360       370       380     

>>XP_011527596 (OMIM: 608270) PREDICTED: threonine aspar  (318 aa)
 initn: 177 init1: 153 opt: 236  Z-score: 291.9  bits: 62.3 E(85289): 1.6e-09
Smith-Waterman score: 236; 27.6% identity (55.2% similar) in 232 aa overlap (76-297:2-225)

          50        60        70        80        90       100     
pF1KB5 ALASGGSALDAVESGCAMCEREQCDGSVGFGGSPDELGETTLDAMIMDGTTMDVGAVGDL
                                     :.. . :::   :: :::: ... :::: :
XP_011                              MGSNLNLLGEIECDASIMDGKSLNFGAVGAL
                                            10        20        30 

         110        120       130       140       150       160    
pF1KB5 RRIKNAIGVARKVL-EHTTHTLLVGESATTFAQSMGFINEDLSTSASQALHSDWLARNCQ
         ::: ..:: ..: :     : .:.    :  . :     .. .  .   .   .:   
XP_011 SGIKNPVSVANRLLCEGQKGKLSAGRIPPCFLVGEGAYRWAVDHGIPSCPPNIMTTRFSL
              40        50        60        70        80        90 

          170         180       190       200        210       220 
pF1KB5 PNYWRNV--IPDPSKYCGPYKPPGILKQDIPIHKETEDDRGH-DTIGMVVIHKTGHIAAG
         . ::   .    .    .      .:.    .: :.: :  ::.: ::. . :..::.
XP_011 AAFKRNKRKLELAERVDTDFMQLKKRRQS----SEKENDSGTLDTVGAVVVDHEGNVAAA
             100       110       120           130       140       

             230       240       250             260       270     
pF1KB5 TSTNGIKFKIHGRVGDSPIPGAGAYADDTAG------AAAATGNGDILMRFLPSYQAVEY
       .:..:. .:  ::::.. . : : .:..:..      :....: :. :.: . . .  . 
XP_011 VSSGGLALKHPGRVGQAALYGCGCWAENTGAHNPYSTAVSTSGCGEHLVRTILARECSHA
       150       160       170       180       190       200       

         280       290       300       310       320       330     
pF1KB5 MRRGEDPTIACQKVISRIQKHFPEFFGAVICANVTGSYGAACNKLSTFTQFSFMVYNSEK
       .. .::   : : ..  .:..:                                      
XP_011 LQ-AED---AHQALLETMQNKFISSPFLASEDGVLGGVIVLRSCRCSAEPDSSQNKQTLL
        210          220       230       240       250       260   

>>NP_001310532 (OMIM: 608270) threonine aspartase 1 isof  (318 aa)
 initn: 177 init1: 153 opt: 236  Z-score: 291.9  bits: 62.3 E(85289): 1.6e-09
Smith-Waterman score: 236; 27.6% identity (55.2% similar) in 232 aa overlap (76-297:2-225)

          50        60        70        80        90       100     
pF1KB5 ALASGGSALDAVESGCAMCEREQCDGSVGFGGSPDELGETTLDAMIMDGTTMDVGAVGDL
                                     :.. . :::   :: :::: ... :::: :
NP_001                              MGSNLNLLGEIECDASIMDGKSLNFGAVGAL
                                            10        20        30 

         110        120       130       140       150       160    
pF1KB5 RRIKNAIGVARKVL-EHTTHTLLVGESATTFAQSMGFINEDLSTSASQALHSDWLARNCQ
         ::: ..:: ..: :     : .:.    :  . :     .. .  .   .   .:   
NP_001 SGIKNPVSVANRLLCEGQKGKLSAGRIPPCFLVGEGAYRWAVDHGIPSCPPNIMTTRFSL
              40        50        60        70        80        90 

          170         180       190       200        210       220 
pF1KB5 PNYWRNV--IPDPSKYCGPYKPPGILKQDIPIHKETEDDRGH-DTIGMVVIHKTGHIAAG
         . ::   .    .    .      .:.    .: :.: :  ::.: ::. . :..::.
NP_001 AAFKRNKRKLELAERVDTDFMQLKKRRQS----SEKENDSGTLDTVGAVVVDHEGNVAAA
             100       110       120           130       140       

             230       240       250             260       270     
pF1KB5 TSTNGIKFKIHGRVGDSPIPGAGAYADDTAG------AAAATGNGDILMRFLPSYQAVEY
       .:..:. .:  ::::.. . : : .:..:..      :....: :. :.: . . .  . 
NP_001 VSSGGLALKHPGRVGQAALYGCGCWAENTGAHNPYSTAVSTSGCGEHLVRTILARECSHA
       150       160       170       180       190       200       

         280       290       300       310       320       330     
pF1KB5 MRRGEDPTIACQKVISRIQKHFPEFFGAVICANVTGSYGAACNKLSTFTQFSFMVYNSEK
       .. .::   : : ..  .:..:                                      
NP_001 LQ-AED---AHQALLETMQNKFISSPFLASEDGVLGGVIVLRSCRCSAEPDSSQNKQTLL
        210          220       230       240       250       260   

>>XP_016883417 (OMIM: 608270) PREDICTED: threonine aspar  (318 aa)
 initn: 177 init1: 153 opt: 236  Z-score: 291.9  bits: 62.3 E(85289): 1.6e-09
Smith-Waterman score: 236; 27.6% identity (55.2% similar) in 232 aa overlap (76-297:2-225)

          50        60        70        80        90       100     
pF1KB5 ALASGGSALDAVESGCAMCEREQCDGSVGFGGSPDELGETTLDAMIMDGTTMDVGAVGDL
                                     :.. . :::   :: :::: ... :::: :
XP_016                              MGSNLNLLGEIECDASIMDGKSLNFGAVGAL
                                            10        20        30 

         110        120       130       140       150       160    
pF1KB5 RRIKNAIGVARKVL-EHTTHTLLVGESATTFAQSMGFINEDLSTSASQALHSDWLARNCQ
         ::: ..:: ..: :     : .:.    :  . :     .. .  .   .   .:   
XP_016 SGIKNPVSVANRLLCEGQKGKLSAGRIPPCFLVGEGAYRWAVDHGIPSCPPNIMTTRFSL
              40        50        60        70        80        90 

          170         180       190       200        210       220 
pF1KB5 PNYWRNV--IPDPSKYCGPYKPPGILKQDIPIHKETEDDRGH-DTIGMVVIHKTGHIAAG
         . ::   .    .    .      .:.    .: :.: :  ::.: ::. . :..::.
XP_016 AAFKRNKRKLELAERVDTDFMQLKKRRQS----SEKENDSGTLDTVGAVVVDHEGNVAAA
             100       110       120           130       140       

             230       240       250             260       270     
pF1KB5 TSTNGIKFKIHGRVGDSPIPGAGAYADDTAG------AAAATGNGDILMRFLPSYQAVEY
       .:..:. .:  ::::.. . : : .:..:..      :....: :. :.: . . .  . 
XP_016 VSSGGLALKHPGRVGQAALYGCGCWAENTGAHNPYSTAVSTSGCGEHLVRTILARECSHA
       150       160       170       180       190       200       

         280       290       300       310       320       330     
pF1KB5 MRRGEDPTIACQKVISRIQKHFPEFFGAVICANVTGSYGAACNKLSTFTQFSFMVYNSEK
       .. .::   : : ..  .:..:                                      
XP_016 LQ-AED---AHQALLETMQNKFISSPFLASEDGVLGGVIVLRSCRCSAEPDSSQNKQTLL
        210          220       230       240       250       260   

>>XP_011527594 (OMIM: 608270) PREDICTED: threonine aspar  (318 aa)
 initn: 177 init1: 153 opt: 236  Z-score: 291.9  bits: 62.3 E(85289): 1.6e-09
Smith-Waterman score: 236; 27.6% identity (55.2% similar) in 232 aa overlap (76-297:2-225)

          50        60        70        80        90       100     
pF1KB5 ALASGGSALDAVESGCAMCEREQCDGSVGFGGSPDELGETTLDAMIMDGTTMDVGAVGDL
                                     :.. . :::   :: :::: ... :::: :
XP_011                              MGSNLNLLGEIECDASIMDGKSLNFGAVGAL
                                            10        20        30 

         110        120       130       140       150       160    
pF1KB5 RRIKNAIGVARKVL-EHTTHTLLVGESATTFAQSMGFINEDLSTSASQALHSDWLARNCQ
         ::: ..:: ..: :     : .:.    :  . :     .. .  .   .   .:   
XP_011 SGIKNPVSVANRLLCEGQKGKLSAGRIPPCFLVGEGAYRWAVDHGIPSCPPNIMTTRFSL
              40        50        60        70        80        90 

          170         180       190       200        210       220 
pF1KB5 PNYWRNV--IPDPSKYCGPYKPPGILKQDIPIHKETEDDRGH-DTIGMVVIHKTGHIAAG
         . ::   .    .    .      .:.    .: :.: :  ::.: ::. . :..::.
XP_011 AAFKRNKRKLELAERVDTDFMQLKKRRQS----SEKENDSGTLDTVGAVVVDHEGNVAAA
             100       110       120           130       140       

             230       240       250             260       270     
pF1KB5 TSTNGIKFKIHGRVGDSPIPGAGAYADDTAG------AAAATGNGDILMRFLPSYQAVEY
       .:..:. .:  ::::.. . : : .:..:..      :....: :. :.: . . .  . 
XP_011 VSSGGLALKHPGRVGQAALYGCGCWAENTGAHNPYSTAVSTSGCGEHLVRTILARECSHA
       150       160       170       180       190       200       

         280       290       300       310       320       330     
pF1KB5 MRRGEDPTIACQKVISRIQKHFPEFFGAVICANVTGSYGAACNKLSTFTQFSFMVYNSEK
       .. .::   : : ..  .:..:                                      
XP_011 LQ-AED---AHQALLETMQNKFISSPFLASEDGVLGGVIVLRSCRCSAEPDSSQNKQTLL
        210          220       230       240       250       260   

>>XP_016883416 (OMIM: 608270) PREDICTED: threonine aspar  (318 aa)
 initn: 177 init1: 153 opt: 236  Z-score: 291.9  bits: 62.3 E(85289): 1.6e-09
Smith-Waterman score: 236; 27.6% identity (55.2% similar) in 232 aa overlap (76-297:2-225)

          50        60        70        80        90       100     
pF1KB5 ALASGGSALDAVESGCAMCEREQCDGSVGFGGSPDELGETTLDAMIMDGTTMDVGAVGDL
                                     :.. . :::   :: :::: ... :::: :
XP_016                              MGSNLNLLGEIECDASIMDGKSLNFGAVGAL
                                            10        20        30 

         110        120       130       140       150       160    
pF1KB5 RRIKNAIGVARKVL-EHTTHTLLVGESATTFAQSMGFINEDLSTSASQALHSDWLARNCQ
         ::: ..:: ..: :     : .:.    :  . :     .. .  .   .   .:   
XP_016 SGIKNPVSVANRLLCEGQKGKLSAGRIPPCFLVGEGAYRWAVDHGIPSCPPNIMTTRFSL
              40        50        60        70        80        90 

          170         180       190       200        210       220 
pF1KB5 PNYWRNV--IPDPSKYCGPYKPPGILKQDIPIHKETEDDRGH-DTIGMVVIHKTGHIAAG
         . ::   .    .    .      .:.    .: :.: :  ::.: ::. . :..::.
XP_016 AAFKRNKRKLELAERVDTDFMQLKKRRQS----SEKENDSGTLDTVGAVVVDHEGNVAAA
             100       110       120           130       140       

             230       240       250             260       270     
pF1KB5 TSTNGIKFKIHGRVGDSPIPGAGAYADDTAG------AAAATGNGDILMRFLPSYQAVEY
       .:..:. .:  ::::.. . : : .:..:..      :....: :. :.: . . .  . 
XP_016 VSSGGLALKHPGRVGQAALYGCGCWAENTGAHNPYSTAVSTSGCGEHLVRTILARECSHA
       150       160       170       180       190       200       

         280       290       300       310       320       330     
pF1KB5 MRRGEDPTIACQKVISRIQKHFPEFFGAVICANVTGSYGAACNKLSTFTQFSFMVYNSEK
       .. .::   : : ..  .:..:                                      
XP_016 LQ-AED---AHQALLETMQNKFISSPFLASEDGVLGGVIVLRSCRCSAEPDSSQNKQTLL
        210          220       230       240       250       260   

>>NP_001310533 (OMIM: 608270) threonine aspartase 1 isof  (318 aa)
 initn: 177 init1: 153 opt: 236  Z-score: 291.9  bits: 62.3 E(85289): 1.6e-09
Smith-Waterman score: 236; 27.6% identity (55.2% similar) in 232 aa overlap (76-297:2-225)

          50        60        70        80        90       100     
pF1KB5 ALASGGSALDAVESGCAMCEREQCDGSVGFGGSPDELGETTLDAMIMDGTTMDVGAVGDL
                                     :.. . :::   :: :::: ... :::: :
NP_001                              MGSNLNLLGEIECDASIMDGKSLNFGAVGAL
                                            10        20        30 

         110        120       130       140       150       160    
pF1KB5 RRIKNAIGVARKVL-EHTTHTLLVGESATTFAQSMGFINEDLSTSASQALHSDWLARNCQ
         ::: ..:: ..: :     : .:.    :  . :     .. .  .   .   .:   
NP_001 SGIKNPVSVANRLLCEGQKGKLSAGRIPPCFLVGEGAYRWAVDHGIPSCPPNIMTTRFSL
              40        50        60        70        80        90 

          170         180       190       200        210       220 
pF1KB5 PNYWRNV--IPDPSKYCGPYKPPGILKQDIPIHKETEDDRGH-DTIGMVVIHKTGHIAAG
         . ::   .    .    .      .:.    .: :.: :  ::.: ::. . :..::.
NP_001 AAFKRNKRKLELAERVDTDFMQLKKRRQS----SEKENDSGTLDTVGAVVVDHEGNVAAA
             100       110       120           130       140       

             230       240       250             260       270     
pF1KB5 TSTNGIKFKIHGRVGDSPIPGAGAYADDTAG------AAAATGNGDILMRFLPSYQAVEY
       .:..:. .:  ::::.. . : : .:..:..      :....: :. :.: . . .  . 
NP_001 VSSGGLALKHPGRVGQAALYGCGCWAENTGAHNPYSTAVSTSGCGEHLVRTILARECSHA
       150       160       170       180       190       200       

         280       290       300       310       320       330     
pF1KB5 MRRGEDPTIACQKVISRIQKHFPEFFGAVICANVTGSYGAACNKLSTFTQFSFMVYNSEK
       .. .::   : : ..  .:..:                                      
NP_001 LQ-AED---AHQALLETMQNKFISSPFLASEDGVLGGVIVLRSCRCSAEPDSSQNKQTLL
        210          220       230       240       250       260   

>>XP_016873843 (OMIM: 609212) PREDICTED: isoaspartyl pep  (164 aa)
 initn: 224 init1: 159 opt: 208  Z-score: 262.0  bits: 55.8 E(85289): 7.5e-08
Smith-Waterman score: 208; 38.2% identity (69.6% similar) in 102 aa overlap (39-140:30-130)

       10        20        30        40        50        60        
pF1KB5 VLLVPFLLCQALVRCSSPLPLVVNTWPFKNATEAAWRALASGGSALDAVESGCAMCEREQ
                                     :. ...  :  ::::.:::: : ..  ...
XP_016  MNPIVVVHGGGAGPISKDRKERVHQGMVRAATVGYGILREGGSAVDAVE-GAVVALEDD
                10        20        30        40         50        

       70        80        90       100       110       120        
pF1KB5 CDGSVGFGGSPDELGETTLDAMIMDGTTMDVGAVGDLRRIKNAIGVARKVLEHTTHTLLV
        . ..: :.  .  ::. .:: ::::  ...:::. .. : : : .:: :.:.: : .:.
XP_016 PEFNAGCGSVLNTNGEVEMDASIMDGKDLSAGAVSAVQCIANPIKLARLVMEKTPHCFLT
       60        70        80        90       100       110        

      130       140       150       160       170       180        
pF1KB5 GESATTFAQSMGFINEDLSTSASQALHSDWLARNCQPNYWRNVIPDPSKYCGPYKPPGIL
        ..:. :: .::                                                
XP_016 DQGAAQFAAAMGVPEIPGEKLVTERNKKRLEKEKHEKGAQKTDCQN              
      120       130       140       150       160                  




346 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:05:20 2016 done: Sat Nov  5 13:05:21 2016
 Total Scan time:  7.990 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com