Result of FASTA (omim) for pF1KB4753
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4753, 108 aa
  1>>>pF1KB4753 108 - 108 aa - 108 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1073+/-0.00027; mu= 11.3817+/- 0.017
 mean_var=70.3216+/-14.428, 0's: 0 Z-trim(120.2): 29  B-trim: 0 in 0/56
 Lambda= 0.152943
 statistics sampled from 35153 (35184) to 35153 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.413), width:  16
 Scan time:  4.400

The best scores are:                                      opt bits E(85289)
NP_057394 (OMIM: 606007) DNA-directed RNA polymera ( 108)  805 185.5 1.5e-47
NP_006224 (OMIM: 180662) DNA-directed RNA polymera ( 125)  190 49.8 1.2e-06
XP_016857692 (OMIM: 604128) PREDICTED: transcripti ( 450)  166 44.9 0.00013
XP_016857690 (OMIM: 604128) PREDICTED: transcripti ( 466)  166 44.9 0.00013
XP_016857691 (OMIM: 604128) PREDICTED: transcripti ( 466)  166 44.9 0.00013
XP_016857689 (OMIM: 604128) PREDICTED: transcripti ( 487)  166 44.9 0.00013
XP_006716530 (OMIM: 601425) PREDICTED: transcripti ( 254)  160 43.4  0.0002
XP_011515880 (OMIM: 601425) PREDICTED: transcripti ( 266)  160 43.4 0.00021
NP_958845 (OMIM: 601425) transcription elongation  ( 280)  160 43.4 0.00022
NP_006747 (OMIM: 601425) transcription elongation  ( 301)  160 43.5 0.00023
XP_016857693 (OMIM: 604128) PREDICTED: transcripti ( 327)  158 43.0 0.00033
NP_003187 (OMIM: 604128) transcription elongation  ( 348)  158 43.1 0.00035
XP_006710927 (OMIM: 604128) PREDICTED: transcripti ( 351)  158 43.1 0.00035
XP_011540355 (OMIM: 604128) PREDICTED: transcripti ( 364)  158 43.1 0.00036
NP_942016 (OMIM: 604784) transcription elongation  ( 272)  155 42.3 0.00045
XP_016883525 (OMIM: 604784) PREDICTED: transcripti ( 272)  155 42.3 0.00045
XP_016883526 (OMIM: 604784) PREDICTED: transcripti ( 272)  155 42.3 0.00045
XP_011527325 (OMIM: 604784) PREDICTED: transcripti ( 297)  155 42.4 0.00049
XP_011527329 (OMIM: 604784) PREDICTED: transcripti ( 297)  155 42.4 0.00049
XP_011527324 (OMIM: 604784) PREDICTED: transcripti ( 297)  155 42.4 0.00049
NP_003186 (OMIM: 604784) transcription elongation  ( 299)  155 42.4 0.00049
XP_005260286 (OMIM: 604784) PREDICTED: transcripti ( 324)  155 42.4 0.00052
NP_001265714 (OMIM: 607525) DNA-directed RNA polym ( 126)  137 38.1  0.0039
NP_055411 (OMIM: 607525) DNA-directed RNA polymera ( 126)  137 38.1  0.0039
NP_001265715 (OMIM: 607525) DNA-directed RNA polym ( 126)  137 38.1  0.0039
NP_740753 (OMIM: 607525) DNA-directed RNA polymera ( 126)  137 38.1  0.0039


>>NP_057394 (OMIM: 606007) DNA-directed RNA polymerase I  (108 aa)
 initn: 805 init1: 805 opt: 805  Z-score: 974.8  bits: 185.5 E(85289): 1.5e-47
Smith-Waterman score: 805; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)

               10        20        30        40        50        60
pF1KB4 MLLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MLLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWE
               10        20        30        40        50        60

               70        80        90       100        
pF1KB4 NVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 NVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD
               70        80        90       100        

>>NP_006224 (OMIM: 180662) DNA-directed RNA polymerase I  (125 aa)
 initn: 193 init1: 128 opt: 190  Z-score: 240.5  bits: 49.8 E(85289): 1.2e-06
Smith-Waterman score: 190; 27.3% identity (55.5% similar) in 110 aa overlap (4-108:16-125)

                           10          20        30          40    
pF1KB4             MLLFCPGCGNGLIVEEGQ--RCHRFACNTCPYVHNITRKV--TNRKYP
                      ::  :.: :  .: .  :   .:: .: : ..   .   .:.   
NP_006 MEPDGTYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITH
               10        20        30        40        50        60

           50        60         70        80        90       100   
pF1KB4 KLKEVDDVLGGAAAWENVDSTAES-CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCG
       .. :. .... ..   ..  : .  : :: : .: :.: ..  :.. :  .: :   .::
NP_006 EVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCG
               70        80        90       100       110       120

            
pF1KB4 HRWRD
       ::: .
NP_006 HRWTE
            

>>XP_016857692 (OMIM: 604128) PREDICTED: transcription e  (450 aa)
 initn: 169 init1: 112 opt: 166  Z-score: 204.1  bits: 44.9 E(85289): 0.00013
Smith-Waterman score: 166; 55.0% identity (72.5% similar) in 40 aa overlap (69-108:273-310)

       40        50        60        70        80        90        
pF1KB4 TNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCC
                                     : ::..    . :.::::::::::::  : 
XP_016 LRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-
            250       260       270       280       290       300  

      100                                                          
pF1KB4 NAQCGHRWRD                                                  
         .::.::.:                                                  
XP_016 -NECGNRWKDEQVCHLSTDGIGFLRSTEERKNILHLDHASLESASTDGISFEPGHSQGWE
              310       320       330       340       350       360

>>XP_016857690 (OMIM: 604128) PREDICTED: transcription e  (466 aa)
 initn: 169 init1: 112 opt: 166  Z-score: 203.9  bits: 44.9 E(85289): 0.00013
Smith-Waterman score: 166; 55.0% identity (72.5% similar) in 40 aa overlap (69-108:289-326)

       40        50        60        70        80        90        
pF1KB4 TNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCC
                                     : ::..    . :.::::::::::::  : 
XP_016 LRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-
      260       270       280       290       300       310        

      100                                                          
pF1KB4 NAQCGHRWRD                                                  
         .::.::.:                                                  
XP_016 -NECGNRWKDEQVCHLSTDGIGFLRSTEERKNILHLDHASLESASTDGISFEPGHSQGWE
        320       330       340       350       360       370      

>>XP_016857691 (OMIM: 604128) PREDICTED: transcription e  (466 aa)
 initn: 169 init1: 112 opt: 166  Z-score: 203.9  bits: 44.9 E(85289): 0.00013
Smith-Waterman score: 166; 55.0% identity (72.5% similar) in 40 aa overlap (69-108:289-326)

       40        50        60        70        80        90        
pF1KB4 TNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCC
                                     : ::..    . :.::::::::::::  : 
XP_016 LRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-
      260       270       280       290       300       310        

      100                                                          
pF1KB4 NAQCGHRWRD                                                  
         .::.::.:                                                  
XP_016 -NECGNRWKDEQVCHLSTDGIGFLRSTEERKNILHLDHASLESASTDGISFEPGHSQGWE
        320       330       340       350       360       370      

>>XP_016857689 (OMIM: 604128) PREDICTED: transcription e  (487 aa)
 initn: 169 init1: 112 opt: 166  Z-score: 203.6  bits: 44.9 E(85289): 0.00013
Smith-Waterman score: 166; 55.0% identity (72.5% similar) in 40 aa overlap (69-108:310-347)

       40        50        60        70        80        90        
pF1KB4 TNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCC
                                     : ::..    . :.::::::::::::  : 
XP_016 LRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLC-
     280       290       300       310       320       330         

      100                                                          
pF1KB4 NAQCGHRWRD                                                  
         .::.::.:                                                  
XP_016 -NECGNRWKDEQVCHLSTDGIGFLRSTEERKNILHLDHASLESASTDGISFEPGHSQGWE
       340       350       360       370       380       390       

>>XP_006716530 (OMIM: 601425) PREDICTED: transcription e  (254 aa)
 initn: 160 init1: 113 opt: 160  Z-score: 200.4  bits: 43.4 E(85289): 0.0002
Smith-Waterman score: 160; 52.5% identity (72.5% similar) in 40 aa overlap (68-107:215-252)

        40        50        60        70        80        90       
pF1KB4 VTNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKC
                                     .: ::..    . :.::::::::::::  :
XP_006 ELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC
          190       200       210       220       230       240    

       100         
pF1KB4 CNAQCGHRWRD 
          .::.::.  
XP_006 --NECGNRWKFC
            250    

>>XP_011515880 (OMIM: 601425) PREDICTED: transcription e  (266 aa)
 initn: 160 init1: 113 opt: 160  Z-score: 200.1  bits: 43.4 E(85289): 0.00021
Smith-Waterman score: 160; 52.5% identity (72.5% similar) in 40 aa overlap (68-107:227-264)

        40        50        60        70        80        90       
pF1KB4 VTNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKC
                                     .: ::..    . :.::::::::::::  :
XP_011 ELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC
        200       210       220       230       240       250      

       100         
pF1KB4 CNAQCGHRWRD 
          .::.::.  
XP_011 --NECGNRWKFC
          260      

>>NP_958845 (OMIM: 601425) transcription elongation fact  (280 aa)
 initn: 160 init1: 113 opt: 160  Z-score: 199.8  bits: 43.4 E(85289): 0.00022
Smith-Waterman score: 160; 52.5% identity (72.5% similar) in 40 aa overlap (68-107:241-278)

        40        50        60        70        80        90       
pF1KB4 VTNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKC
                                     .: ::..    . :.::::::::::::  :
NP_958 ELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC
              220       230       240       250       260       270

       100         
pF1KB4 CNAQCGHRWRD 
          .::.::.  
NP_958 --NECGNRWKFC
                280

>>NP_006747 (OMIM: 601425) transcription elongation fact  (301 aa)
 initn: 160 init1: 113 opt: 160  Z-score: 199.4  bits: 43.5 E(85289): 0.00023
Smith-Waterman score: 160; 52.5% identity (72.5% similar) in 40 aa overlap (68-107:262-299)

        40        50        60        70        80        90       
pF1KB4 VTNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKC
                                     .: ::..    . :.::::::::::::  :
NP_006 ELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC
             240       250       260       270       280       290 

       100         
pF1KB4 CNAQCGHRWRD 
          .::.::.  
NP_006 --NECGNRWKFC
               300 




108 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:49:29 2016 done: Sat Nov  5 21:49:29 2016
 Total Scan time:  4.400 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]
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