Result of FASTA (omim) for pF1KB8851
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8851, 73 aa
  1>>>pF1KB8851 73 - 73 aa - 73 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7955+/-0.000235; mu= 6.7961+/- 0.015
 mean_var=88.8522+/-17.669, 0's: 0 Z-trim(123.5): 31  B-trim: 84 in 1/54
 Lambda= 0.136063
 statistics sampled from 43311 (43342) to 43311 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.853), E-opt: 0.2 (0.508), width:  16
 Scan time:  4.200

The best scores are:                                      opt bits E(85289)
NP_004117 (OMIM: 604390) guanine nucleotide-bindin (  73)  481 102.4 6.8e-23
NP_001316355 (OMIM: 189970) guanine nucleotide-bin (  74)  380 82.6 6.4e-17
NP_068774 (OMIM: 189970) guanine nucleotide-bindin (  74)  380 82.6 6.4e-17
NP_001185685 (OMIM: 139391) guanine nucleotide-bin (  69)  299 66.6 3.7e-12
NP_001185684 (OMIM: 139391) guanine nucleotide-bin (  69)  299 66.6 3.7e-12
NP_113686 (OMIM: 139391) guanine nucleotide-bindin (  69)  299 66.6 3.7e-12
NP_001185683 (OMIM: 139391) guanine nucleotide-bin (  69)  299 66.6 3.7e-12
XP_016857299 (OMIM: 615405) PREDICTED: guanine nuc (  72)  181 43.5 3.6e-05
NP_061329 (OMIM: 615405) guanine nucleotide-bindin (  72)  181 43.5 3.6e-05
XP_016857300 (OMIM: 615405) PREDICTED: guanine nuc (  72)  181 43.5 3.6e-05
XP_016857298 (OMIM: 615405) PREDICTED: guanine nuc (  72)  181 43.5 3.6e-05
XP_016882095 (OMIM: 604430) PREDICTED: guanine nuc (  68)  172 41.7 0.00012
NP_443079 (OMIM: 604430) guanine nucleotide-bindin (  68)  172 41.7 0.00012
NP_444292 (OMIM: 606981) guanine nucleotide-bindin (  71)  146 36.6  0.0042
XP_016876866 (OMIM: 606981) PREDICTED: guanine nuc (  71)  146 36.6  0.0042
NP_001230703 (OMIM: 606981) guanine nucleotide-bin (  71)  146 36.6  0.0042
XP_011535148 (OMIM: 606981) PREDICTED: guanine nuc (  71)  146 36.6  0.0042
NP_001230702 (OMIM: 606981) guanine nucleotide-bin (  71)  146 36.6  0.0042
XP_016876865 (OMIM: 606981) PREDICTED: guanine nuc (  71)  146 36.6  0.0042
XP_006720236 (OMIM: 606981) PREDICTED: guanine nuc (  71)  146 36.6  0.0042
XP_006718563 (OMIM: 608941) PREDICTED: guanine nuc (  75)  144 36.2  0.0057
NP_036334 (OMIM: 608941) guanine nucleotide-bindin (  75)  144 36.2  0.0057
NP_001017998 (OMIM: 604389) guanine nucleotide-bin (  68)  143 36.0  0.0061
NP_001185593 (OMIM: 604389) guanine nucleotide-bin (  68)  143 36.0  0.0061


>>NP_004117 (OMIM: 604390) guanine nucleotide-binding pr  (73 aa)
 initn: 481 init1: 481 opt: 481  Z-score: 532.0  bits: 102.4 E(85289): 6.8e-23
Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 73 aa overlap (1-73:1-73)

               10        20        30        40        50        60
pF1KB8 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
               10        20        30        40        50        60

               70   
pF1KB8 KNPFKEKGSCVIS
       :::::::::::::
NP_004 KNPFKEKGSCVIS
               70   

>>NP_001316355 (OMIM: 189970) guanine nucleotide-binding  (74 aa)
 initn: 378 init1: 350 opt: 380  Z-score: 424.7  bits: 82.6 E(85289): 6.4e-17
Smith-Waterman score: 380; 75.7% identity (93.2% similar) in 74 aa overlap (1-73:1-74)

               10        20        30        40        50        60
pF1KB8 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
       ::...:::: ::.::::::.::.::: :.:. :::: ::...:.::::::::::::::::
NP_001 MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPED
               10        20        30        40        50        60

                70   
pF1KB8 KNPFKE-KGSCVIS
       :::::: ::.::::
NP_001 KNPFKELKGGCVIS
               70    

>>NP_068774 (OMIM: 189970) guanine nucleotide-binding pr  (74 aa)
 initn: 378 init1: 350 opt: 380  Z-score: 424.7  bits: 82.6 E(85289): 6.4e-17
Smith-Waterman score: 380; 75.7% identity (93.2% similar) in 74 aa overlap (1-73:1-74)

               10        20        30        40        50        60
pF1KB8 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
       ::...:::: ::.::::::.::.::: :.:. :::: ::...:.::::::::::::::::
NP_068 MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPED
               10        20        30        40        50        60

                70   
pF1KB8 KNPFKE-KGSCVIS
       :::::: ::.::::
NP_068 KNPFKELKGGCVIS
               70    

>>NP_001185685 (OMIM: 139391) guanine nucleotide-binding  (69 aa)
 initn: 299 init1: 299 opt: 299  Z-score: 339.2  bits: 66.6 E(85289): 3.7e-12
Smith-Waterman score: 299; 65.7% identity (88.1% similar) in 67 aa overlap (7-73:3-69)

               10        20        30        40        50        60
pF1KB8 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
             .:: ::. ::::::::.::::  :  .:: ..:::.:.: ..:.::..::::::
NP_001     MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPED
                   10        20        30        40        50      

               70   
pF1KB8 KNPFKEKGSCVIS
       ::::::::.:.::
NP_001 KNPFKEKGGCLIS
         60         

>>NP_001185684 (OMIM: 139391) guanine nucleotide-binding  (69 aa)
 initn: 299 init1: 299 opt: 299  Z-score: 339.2  bits: 66.6 E(85289): 3.7e-12
Smith-Waterman score: 299; 65.7% identity (88.1% similar) in 67 aa overlap (7-73:3-69)

               10        20        30        40        50        60
pF1KB8 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
             .:: ::. ::::::::.::::  :  .:: ..:::.:.: ..:.::..::::::
NP_001     MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPED
                   10        20        30        40        50      

               70   
pF1KB8 KNPFKEKGSCVIS
       ::::::::.:.::
NP_001 KNPFKEKGGCLIS
         60         

>>NP_113686 (OMIM: 139391) guanine nucleotide-binding pr  (69 aa)
 initn: 299 init1: 299 opt: 299  Z-score: 339.2  bits: 66.6 E(85289): 3.7e-12
Smith-Waterman score: 299; 65.7% identity (88.1% similar) in 67 aa overlap (7-73:3-69)

               10        20        30        40        50        60
pF1KB8 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
             .:: ::. ::::::::.::::  :  .:: ..:::.:.: ..:.::..::::::
NP_113     MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPED
                   10        20        30        40        50      

               70   
pF1KB8 KNPFKEKGSCVIS
       ::::::::.:.::
NP_113 KNPFKEKGGCLIS
         60         

>>NP_001185683 (OMIM: 139391) guanine nucleotide-binding  (69 aa)
 initn: 299 init1: 299 opt: 299  Z-score: 339.2  bits: 66.6 E(85289): 3.7e-12
Smith-Waterman score: 299; 65.7% identity (88.1% similar) in 67 aa overlap (7-73:3-69)

               10        20        30        40        50        60
pF1KB8 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
             .:: ::. ::::::::.::::  :  .:: ..:::.:.: ..:.::..::::::
NP_001     MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPED
                   10        20        30        40        50      

               70   
pF1KB8 KNPFKEKGSCVIS
       ::::::::.:.::
NP_001 KNPFKEKGGCLIS
         60         

>>XP_016857299 (OMIM: 615405) PREDICTED: guanine nucleot  (72 aa)
 initn: 174 init1: 174 opt: 181  Z-score: 213.8  bits: 43.5 E(85289): 3.6e-05
Smith-Waterman score: 181; 48.1% identity (79.6% similar) in 54 aa overlap (19-72:18-71)

               10        20        30        40        50        60
pF1KB8 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
                         :.::: :....: .::: : .. .: ::..  :::. ::: .
XP_016  MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTS
                10        20        30        40        50         

               70   
pF1KB8 KNPFKEKGSCVIS
       .::::.: .:.: 
XP_016 ENPFKDKKTCIIL
      60        70  

>>NP_061329 (OMIM: 615405) guanine nucleotide-binding pr  (72 aa)
 initn: 174 init1: 174 opt: 181  Z-score: 213.8  bits: 43.5 E(85289): 3.6e-05
Smith-Waterman score: 181; 48.1% identity (79.6% similar) in 54 aa overlap (19-72:18-71)

               10        20        30        40        50        60
pF1KB8 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
                         :.::: :....: .::: : .. .: ::..  :::. ::: .
NP_061  MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTS
                10        20        30        40        50         

               70   
pF1KB8 KNPFKEKGSCVIS
       .::::.: .:.: 
NP_061 ENPFKDKKTCIIL
      60        70  

>>XP_016857300 (OMIM: 615405) PREDICTED: guanine nucleot  (72 aa)
 initn: 174 init1: 174 opt: 181  Z-score: 213.8  bits: 43.5 E(85289): 3.6e-05
Smith-Waterman score: 181; 48.1% identity (79.6% similar) in 54 aa overlap (19-72:18-71)

               10        20        30        40        50        60
pF1KB8 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
                         :.::: :....: .::: : .. .: ::..  :::. ::: .
XP_016  MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTS
                10        20        30        40        50         

               70   
pF1KB8 KNPFKEKGSCVIS
       .::::.: .:.: 
XP_016 ENPFKDKKTCIIL
      60        70  




73 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:12:15 2016 done: Sat Nov  5 20:12:16 2016
 Total Scan time:  4.200 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]
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