Result of FASTA (ccds) for pF1KB5213
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5213, 145 aa
  1>>>pF1KB5213 145 - 145 aa - 145 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9743+/-0.000539; mu= 13.0407+/- 0.033
 mean_var=57.6441+/-11.450, 0's: 0 Z-trim(112.6): 52  B-trim: 0 in 0/51
 Lambda= 0.168926
 statistics sampled from 13328 (13380) to 13328 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.411), width:  16
 Scan time:  1.660

The best scores are:                                      opt bits E(32554)
CCDS43738.1 UBE2V2 gene_id:7336|Hs108|chr8         ( 145)  977 245.4 9.4e-66
CCDS13424.1 UBE2V1 gene_id:387522|Hs108|chr20      ( 370)  892 224.9 3.5e-59
CCDS33483.1 UBE2V1 gene_id:7335|Hs108|chr20        ( 147)  886 223.2 4.5e-59
CCDS13426.1 UBE2V1 gene_id:7335|Hs108|chr20        ( 170)  881 222.0 1.2e-58
CCDS74740.1 UBE2V1 gene_id:7335|Hs108|chr20        ( 105)  642 163.7 2.7e-41
CCDS13427.1 UBE2V1 gene_id:7335|Hs108|chr20        ( 103)  540 138.8 8.1e-34
CCDS58775.1 UBE2V1 gene_id:7335|Hs108|chr20        ( 105)  355 93.7 3.1e-20


>>CCDS43738.1 UBE2V2 gene_id:7336|Hs108|chr8              (145 aa)
 initn: 977 init1: 977 opt: 977  Z-score: 1294.0  bits: 245.4 E(32554): 9.4e-66
Smith-Waterman score: 977; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KB5 MAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYEN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 RIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQ
               70        80        90       100       110       120

              130       140     
pF1KB5 ELRRLMMSKENMKLPQPPEGQTYNN
       :::::::::::::::::::::::::
CCDS43 ELRRLMMSKENMKLPQPPEGQTYNN
              130       140     

>>CCDS13424.1 UBE2V1 gene_id:387522|Hs108|chr20           (370 aa)
 initn: 906 init1: 886 opt: 892  Z-score: 1175.9  bits: 224.9 E(32554): 3.5e-59
Smith-Waterman score: 892; 90.2% identity (96.5% similar) in 143 aa overlap (3-145:228-370)

                                           10        20        30  
pF1KB5                             MAVSTGVKVPRNFRLLEELEEGQKGVGDGTVS
                                     ..::::::::::::::::::::::::::::
CCDS13 WVTLLQDWHVILPRKHHRIHHVSPHETYFCITTGVKVPRNFRLLEELEEGQKGVGDGTVS
       200       210       220       230       240       250       

             40        50        60        70        80        90  
pF1KB5 WGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGIN
       :::::::::::::::::::::::: :::::::::.::::::::::: :::::::::::.:
CCDS13 WGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVN
       260       270       280       290       300       310       

            100       110       120       130       140     
pF1KB5 NSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTYNN
       .:.:.:: :.: ::::::::::::::::::::::::::::::::::::: :.:
CCDS13 SSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN
       320       330       340       350       360       370

>>CCDS33483.1 UBE2V1 gene_id:7335|Hs108|chr20             (147 aa)
 initn: 920 init1: 881 opt: 886  Z-score: 1174.0  bits: 223.2 E(32554): 4.5e-59
Smith-Waterman score: 886; 89.1% identity (95.2% similar) in 147 aa overlap (1-145:1-147)

                 10        20        30        40        50        
pF1KB5 MAVSTG--VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNY
       ::..::  :::::::::::::::::::::::::::::::::::::::::::::::::: :
CCDS33 MAATTGSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIY
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB5 ENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVV
       ::::::::.::::::::::: :::::::::::.:.:.:.:: :.: ::::::::::::::
CCDS33 ENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVV
               70        80        90       100       110       120

      120       130       140     
pF1KB5 LQELRRLMMSKENMKLPQPPEGQTYNN
       ::::::::::::::::::::::: :.:
CCDS33 LQELRRLMMSKENMKLPQPPEGQCYSN
              130       140       

>>CCDS13426.1 UBE2V1 gene_id:7335|Hs108|chr20             (170 aa)
 initn: 906 init1: 881 opt: 881  Z-score: 1166.5  bits: 222.0 E(32554): 1.2e-58
Smith-Waterman score: 881; 91.4% identity (96.4% similar) in 140 aa overlap (6-145:31-170)

                                        10        20        30     
pF1KB5                          MAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGL
                                     ::::::::::::::::::::::::::::::
CCDS13 MPGEVQASYLKSQSKLSDEGRLEPRKFHCKGVKVPRNFRLLEELEEGQKGVGDGTVSWGL
               10        20        30        40        50        60

          40        50        60        70        80        90     
pF1KB5 EDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSS
       ::::::::::::::::::::: :::::::::.::::::::::: :::::::::::.:.:.
CCDS13 EDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSN
               70        80        90       100       110       120

         100       110       120       130       140     
pF1KB5 GMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTYNN
       :.:: :.: ::::::::::::::::::::::::::::::::::::: :.:
CCDS13 GVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN
              130       140       150       160       170

>>CCDS74740.1 UBE2V1 gene_id:7335|Hs108|chr20             (105 aa)
 initn: 667 init1: 642 opt: 642  Z-score: 854.9  bits: 163.7 E(32554): 2.7e-41
Smith-Waterman score: 642; 88.6% identity (95.2% similar) in 105 aa overlap (41-145:1-105)

               20        30        40        50        60        70
pF1KB5 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECG
                                     :::::::::::::::: :::::::::.:::
CCDS74                               MTLTRWTGMIIGPPRTIYENRIYSLKIECG
                                             10        20        30

               80        90       100       110       120       130
pF1KB5 PKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKE
       :::::::: :::::::::::.:.:.:.:: :.: ::::::::::::::::::::::::::
CCDS74 PKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKE
               40        50        60        70        80        90

              140     
pF1KB5 NMKLPQPPEGQTYNN
       ::::::::::: :.:
CCDS74 NMKLPQPPEGQCYSN
              100     

>>CCDS13427.1 UBE2V1 gene_id:7335|Hs108|chr20             (103 aa)
 initn: 556 init1: 531 opt: 540  Z-score: 720.6  bits: 138.8 E(32554): 8.1e-34
Smith-Waterman score: 540; 76.6% identity (87.9% similar) in 107 aa overlap (39-145:3-103)

       10        20        30        40        50        60        
pF1KB5 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVE
                                     ::..:  .:.      .: :::::::::.:
CCDS13                             MKEDLNLENFTA------KTIYENRIYSLKIE
                                           10              20      

       70        80        90       100       110       120        
pF1KB5 CGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMS
       :::::::::: :::::::::::.:.:.:.:: :.: ::::::::::::::::::::::::
CCDS13 CGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMS
         30        40        50        60        70        80      

      130       140     
pF1KB5 KENMKLPQPPEGQTYNN
       ::::::::::::: :.:
CCDS13 KENMKLPQPPEGQCYSN
         90       100   

>>CCDS58775.1 UBE2V1 gene_id:7335|Hs108|chr20             (105 aa)
 initn: 656 init1: 350 opt: 355  Z-score: 476.8  bits: 93.7 E(32554): 3.1e-20
Smith-Waterman score: 543; 65.3% identity (68.0% similar) in 147 aa overlap (1-145:1-105)

                 10        20        30        40        50        
pF1KB5 MAVSTG--VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNY
       ::..::  :::::::::::::::::::::::::::::::::::::::::::::::::   
CCDS58 MAATTGSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPR---
               10        20        30        40        50          

       60        70        80        90       100       110        
pF1KB5 ENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVV
                                              :: :.: ::::::::::::::
CCDS58 ---------------------------------------VDPRAISVLAKWQNSYSIKVV
                                               60        70        

      120       130       140     
pF1KB5 LQELRRLMMSKENMKLPQPPEGQTYNN
       ::::::::::::::::::::::: :.:
CCDS58 LQELRRLMMSKENMKLPQPPEGQCYSN
       80        90       100     




145 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:28:55 2016 done: Sat Nov  5 06:28:56 2016
 Total Scan time:  1.660 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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