FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0983, 240 aa
  1>>>pF1KB0983 240 - 240 aa - 240 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.3506+/-0.00113; mu= -13.4464+/- 0.068
 mean_var=567.3910+/-117.623, 0's: 0 Z-trim(117.6): 45  B-trim: 185 in 1/53
 Lambda= 0.053843
 statistics sampled from 18381 (18418) to 18381 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.819), E-opt: 0.2 (0.566), width:  16
 Scan time:  2.680

The best scores are:                                      opt bits E(32554)
CCDS10017.1 SNRPN gene_id:6638|Hs108|chr15         ( 240) 1720 146.9 1.2e-35
CCDS13026.1 SNRPB gene_id:6628|Hs108|chr20         ( 240) 1649 141.3 5.3e-34
CCDS13027.1 SNRPB gene_id:6628|Hs108|chr20         ( 231) 1550 133.6 1.1e-31


>>CCDS10017.1 SNRPN gene_id:6638|Hs108|chr15              (240 aa)
 initn: 1720 init1: 1720 opt: 1720  Z-score: 753.8  bits: 146.9 E(32554): 1.2e-35
Smith-Waterman score: 1720; 100.0% identity (100.0% similar) in 240 aa overlap (1-240:1-240)

               10        20        30        40        50        60
pF1KB0 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
              190       200       210       220       230       240

>>CCDS13026.1 SNRPB gene_id:6628|Hs108|chr20              (240 aa)
 initn: 1649 init1: 1649 opt: 1649  Z-score: 723.9  bits: 141.3 E(32554): 5.3e-34
Smith-Waterman score: 1649; 92.9% identity (99.2% similar) in 240 aa overlap (1-240:1-240)

               10        20        30        40        50        60
pF1KB0 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: :
CCDS13 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI
       :::::::::::::::::::::::::::::::::::::::::::::.:::::::.:::::.
CCDS13 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG
       ::::::::::::::::::::::::::::::::::.:::::::::::::::::: ::::.:
CCDS13 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
       :..::::.:.::::::::::::.:.::.::::.:::::::::::::.:::::::::::::
CCDS13 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGMRPPRP
              190       200       210       220       230       240

>>CCDS13027.1 SNRPB gene_id:6628|Hs108|chr20              (231 aa)
 initn: 1550 init1: 1550 opt: 1550  Z-score: 682.6  bits: 133.6 E(32554): 1.1e-31
Smith-Waterman score: 1550; 92.6% identity (99.1% similar) in 229 aa overlap (1-229:1-229)

               10        20        30        40        50        60
pF1KB0 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: :
CCDS13 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI
       :::::::::::::::::::::::::::::::::::::::::::::.:::::::.:::::.
CCDS13 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG
       ::::::::::::::::::::::::::::::::::.:::::::::::::::::: ::::.:
CCDS13 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
       :..::::.:.::::::::::::.:.::.::::.:::::::::::::.::           
CCDS13 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGLL         
              190       200       210       220       230          




240 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:00:55 2016 done: Sat Nov  5 18:00:56 2016
 Total Scan time:  2.680 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]