Result of FASTA (omim) for pF1KE2680
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2680, 427 aa
  1>>>pF1KE2680     427 - 427 aa - 427 aa
Library: /omim/omim.rfq.tfa
  61573307 residues in 86401 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1931+/-0.000333; mu= 19.0885+/- 0.021
 mean_var=68.6748+/-13.376, 0's: 0 Z-trim(114.5): 159  B-trim: 21 in 1/56
 Lambda= 0.154766
 statistics sampled from 24434 (24607) to 24434 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.285), width:  16
 Scan time:  6.600

The best scores are:                                      opt bits E(86401)
NP_004631 (OMIM: 142560) spliceosome RNA helicase  ( 428) 2594 588.0 1.5e-167
NP_542165 (OMIM: 142560) spliceosome RNA helicase  ( 428) 2594 588.0 1.5e-167
NP_001958 (OMIM: 601102) eukaryotic initiation fac ( 407)  891 207.8 4.3e-53
NP_001407 (OMIM: 602641) eukaryotic initiation fac ( 406)  874 204.0   6e-52
NP_055555 (OMIM: 268305,608546) eukaryotic initiat ( 411)  858 200.4 7.2e-51
NP_004388 (OMIM: 600326) probable ATP-dependent RN ( 483)  838 196.0 1.8e-49
NP_001244120 (OMIM: 600326) probable ATP-dependent ( 483)  838 196.0 1.8e-49
XP_005271474 (OMIM: 600326) PREDICTED: probable AT ( 483)  838 196.0 1.8e-49
NP_009135 (OMIM: 606168) probable ATP-dependent RN ( 824)  776 182.3 4.1e-45
NP_057439 (OMIM: 615428) probable ATP-dependent RN ( 455)  735 173.0 1.4e-42
NP_009173 (OMIM: 605812) ATP-dependent RNA helicas ( 479)  716 168.7 2.8e-41
XP_011521136 (OMIM: 605812) PREDICTED: ATP-depende ( 484)  716 168.7 2.9e-41
XP_011521134 (OMIM: 605812) PREDICTED: ATP-depende ( 539)  716 168.8 3.1e-41
NP_060365 (OMIM: 616621) probable ATP-dependent RN ( 796)  686 162.2 4.4e-39
NP_001244103 (OMIM: 605812) ATP-dependent RNA heli ( 370)  668 157.9 3.9e-38
XP_016878379 (OMIM: 605812) PREDICTED: ATP-depende ( 370)  668 157.9 3.9e-38
XP_006721190 (OMIM: 605812) PREDICTED: ATP-depende ( 370)  668 157.9 3.9e-38
NP_001014449 (OMIM: 605812) ATP-dependent RNA heli ( 370)  668 157.9 3.9e-38
NP_001244102 (OMIM: 605812) ATP-dependent RNA heli ( 370)  668 157.9 3.9e-38
NP_001191439 (OMIM: 602641) eukaryotic initiation  ( 347)  655 155.0 2.8e-37
XP_011523824 (OMIM: 268305,608546) PREDICTED: euka ( 390)  651 154.2 5.6e-37
XP_011541093 (OMIM: 607663) PREDICTED: ATP-depende ( 482)  641 152.0 3.1e-36
NP_037396 (OMIM: 607663) ATP-dependent RNA helicas ( 483)  641 152.0 3.1e-36
XP_011541092 (OMIM: 607663) PREDICTED: ATP-depende ( 486)  641 152.0 3.2e-36
NP_001026895 (OMIM: 174300,615464) probable ATP-de ( 619)  641 152.1 3.8e-36
XP_016857920 (OMIM: 174300,615464) PREDICTED: prob ( 619)  641 152.1 3.8e-36
XP_016857921 (OMIM: 174300,615464) PREDICTED: prob ( 619)  641 152.1 3.8e-36
XP_011508337 (OMIM: 174300,615464) PREDICTED: prob ( 619)  641 152.1 3.8e-36
NP_001014451 (OMIM: 605812) ATP-dependent RNA heli ( 448)  636 150.9 6.4e-36
NP_001244101 (OMIM: 605812) ATP-dependent RNA heli ( 453)  636 150.9 6.5e-36
XP_011521135 (OMIM: 605812) PREDICTED: ATP-depende ( 508)  636 150.9 7.1e-36
NP_001317367 (OMIM: 607663) ATP-dependent RNA heli ( 369)  597 142.1 2.3e-33
XP_016866492 (OMIM: 606286) PREDICTED: probable AT ( 439)  589 140.4 9.1e-33
XP_011534229 (OMIM: 606286) PREDICTED: probable AT ( 529)  589 140.4 1.1e-32
XP_011534230 (OMIM: 606286) PREDICTED: probable AT ( 529)  589 140.4 1.1e-32
XP_011534228 (OMIM: 606286) PREDICTED: probable AT ( 604)  589 140.4 1.2e-32
NP_061135 (OMIM: 606286) probable ATP-dependent RN ( 648)  589 140.5 1.2e-32
XP_016879601 (OMIM: 613369) PREDICTED: ATP-depende ( 775)  579 138.3 6.7e-32
XP_006721720 (OMIM: 613369) PREDICTED: ATP-depende ( 938)  579 138.3 7.9e-32
NP_031398 (OMIM: 613369) ATP-dependent RNA helicas ( 938)  579 138.3 7.9e-32
XP_016879600 (OMIM: 613369) PREDICTED: ATP-depende ( 938)  579 138.3 7.9e-32
NP_987095 (OMIM: 613369) ATP-dependent RNA helicas ( 938)  579 138.3 7.9e-32
XP_011540947 (OMIM: 600326) PREDICTED: probable AT ( 434)  571 136.3 1.5e-31
NP_001244104 (OMIM: 605812) ATP-dependent RNA heli ( 328)  561 134.0 5.5e-31
NP_006377 (OMIM: 608469) probable ATP-dependent RN ( 729)  565 135.1 5.6e-31
NP_001091974 (OMIM: 608469) probable ATP-dependent ( 731)  565 135.1 5.6e-31
NP_006764 (OMIM: 606355) ATP-dependent RNA helicas ( 670)  563 134.7 7.1e-31
NP_001307525 (OMIM: 180630) probable ATP-dependent ( 614)  554 132.6 2.7e-30
NP_001307526 (OMIM: 180630) probable ATP-dependent ( 614)  554 132.6 2.7e-30
NP_004387 (OMIM: 180630) probable ATP-dependent RN ( 614)  554 132.6 2.7e-30


>>NP_004631 (OMIM: 142560) spliceosome RNA helicase DDX3  (428 aa)
 initn: 2585 init1: 2519 opt: 2594  Z-score: 3129.0  bits: 588.0 E(86401): 1.5e-167
Smith-Waterman score: 2594; 90.0% identity (97.7% similar) in 428 aa overlap (1-427:1-428)

               10         20        30        40        50         
pF1KE2 MAEQDVENDLLDY-DEEEEPQAPQESTPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAI
       :::.::.:.:::: :.: :  :  ... :: :::.:::::::::::::::::::::::::
NP_004 MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE2 VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMC
       ::::::::::::::::::::::::::::::::::::::::::::::.:::.:::.:::::
NP_004 VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE2 HTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALV
       :::::::::::::::::::::.:::.:::::::::::::::::::::.:::::::::::.
NP_004 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KE2 RNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCR
       ::.:..::..:::.::::::::::::::::::::::.:::::: :::::::::.::::::
NP_004 RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KE2 KFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVIIFVKSVQRC
       ::::::::.::::::::::::::::::::::.::::::::::::::::::.:::::::::
NP_004 KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KE2 MALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVF
       .:::::::::::::::::::: ::::::::::::::::::::::::::::::::::::.:
NP_004 IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
              310       320       330       340       350       360

     360       370       380       390       400       410         
pF1KE2 NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::..:::.::::
NP_004 NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
              370       380       390       400       410       420

     420       
pF1KE2 STYIEQSR
       :.::::.:
NP_004 SSYIEQTR
               

>>NP_542165 (OMIM: 142560) spliceosome RNA helicase DDX3  (428 aa)
 initn: 2585 init1: 2519 opt: 2594  Z-score: 3129.0  bits: 588.0 E(86401): 1.5e-167
Smith-Waterman score: 2594; 90.0% identity (97.7% similar) in 428 aa overlap (1-427:1-428)

               10         20        30        40        50         
pF1KE2 MAEQDVENDLLDY-DEEEEPQAPQESTPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAI
       :::.::.:.:::: :.: :  :  ... :: :::.:::::::::::::::::::::::::
NP_542 MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE2 VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMC
       ::::::::::::::::::::::::::::::::::::::::::::::.:::.:::.:::::
NP_542 VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE2 HTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALV
       :::::::::::::::::::::.:::.:::::::::::::::::::::.:::::::::::.
NP_542 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KE2 RNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCR
       ::.:..::..:::.::::::::::::::::::::::.:::::: :::::::::.::::::
NP_542 RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KE2 KFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVIIFVKSVQRC
       ::::::::.::::::::::::::::::::::.::::::::::::::::::.:::::::::
NP_542 KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KE2 MALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVF
       .:::::::::::::::::::: ::::::::::::::::::::::::::::::::::::.:
NP_542 IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
              310       320       330       340       350       360

     360       370       380       390       400       410         
pF1KE2 NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::..:::.::::
NP_542 NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
              370       380       390       400       410       420

     420       
pF1KE2 STYIEQSR
       :.::::.:
NP_542 SSYIEQTR
               

>>NP_001958 (OMIM: 601102) eukaryotic initiation factor   (407 aa)
 initn: 797 init1: 411 opt: 891  Z-score: 1074.3  bits: 207.8 E(86401): 4.3e-53
Smith-Waterman score: 891; 38.3% identity (72.4% similar) in 373 aa overlap (46-417:35-403)

          20        30        40        50        60        70     
pF1KE2 EEEPQAPQESTPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECI
                                     : :. ::  :::.:   :::.:: .:.. :
NP_001 SADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAI
           10        20        30        40        50        60    

          80        90       100       110       120       130     
pF1KE2 PQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERF
          : :.::. ::.:: ::::.:... :::.:    .. .::.  ::::: ::.:    .
NP_001 IPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILAL
           70        80        90       100       110       120    

         140       150       160       170       180       190     
pF1KE2 SKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLD
       . :: ..   . .:: ..... . :. . ::.:::::::.. ..  : .: : .: ::::
NP_001 GDYM-GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLD
           130       140       150       160       170       180   

         200       210       220       230       240       250     
pF1KE2 ECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETK
       : :.:: .  .. .. :::.      : ...:::.  :.  : .:::.::....:  : .
NP_001 EADEMLSR-GFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKE-E
           190        200       210       220       230       240  

         260       270        280       290       300       310    
pF1KE2 LTLHGLQQYYVKLKDSE-KNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAI
       :::.:..:.:....  : :   : :: ..: ..:..::... ..   :.. .  ..: . 
NP_001 LTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVS
             250       260       270       280       290       300 

          320       330       340       350       360       370    
pF1KE2 AIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRV
       :.:  : :.::   ...:.. . :.:..:.:..::.:...:..:.:::.: . ..:.::.
NP_001 ALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRI
             310       320       330       340       350       360 

          380       390       400       410       420       
pF1KE2 ARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIEQSR
       .:.:::: ::.::.::..: : .:: :..  ....: :.: ..          
NP_001 GRGGRFGRKGVAINFVTEE-DKRILRDIETFYNTTVEEMPMNVADLI      
             370       380        390       400             

>>NP_001407 (OMIM: 602641) eukaryotic initiation factor   (406 aa)
 initn: 781 init1: 405 opt: 874  Z-score: 1053.8  bits: 204.0 E(86401): 6e-52
Smith-Waterman score: 874; 36.5% identity (72.0% similar) in 389 aa overlap (30-417:19-402)

               10        20        30        40        50        60
pF1KE2 MAEQDVENDLLDYDEEEEPQAPQESTPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAIV
                                    :.  :....  : .: : :. :.  :::.: 
NP_001            MSASQDSRSRDNGPDGMEPEGVIESNWNEIVDS-FDDMNLSESLLRGIY
                          10        20        30         40        

               70        80        90       100       110       120
pF1KE2 DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCH
         :::.:: .:.. :   : :.::. ::.:: ::::.:... :::::     . .::.  
NP_001 AYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAP
       50        60        70        80        90       100        

              130       140       150       160       170       180
pF1KE2 TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVR
       ::::: ::.:    .. :: ...  . .:: ... . . :. . ::..::::::.. .. 
NP_001 TRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLN
      110       120        130       140       150       160       

              190       200       210       220       230       240
pF1KE2 NRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRK
        : .: : .: ::::: :.:: .  .. .. .::.    . : ...:::. .:.  : .:
NP_001 RRYLSPKYIKMFVLDEADEMLSR-GFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKK
       170       180       190        200       210       220      

              250       260       270        280       290         
pF1KE2 FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE-KNRKLFDLLDVLEFNQVIIFVKSVQRC
       ::.::....:  : .:::.:..:.:....  : :   : :: ..: ..:..::... .. 
NP_001 FMRDPIRILVKKE-ELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKV
        230        240       250       260       270       280     

     300       310       320       330       340       350         
pF1KE2 MALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVF
         :.. .  ..: . :.:  : :.::   ...:.. . :.:..:.:..::.:...:..:.
NP_001 DWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI
         290       300       310       320       330       340     

     360       370       380       390       400       410         
pF1KE2 NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDI
       :::.: . ..:.::..:.:::: ::.::..:..: : . : :..  ..... :.: ..  
NP_001 NYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE-DKRTLRDIETFYNTSIEEMPLNVAD
         350       360       370        380       390       400    

     420       
pF1KE2 STYIEQSR
               
NP_001 LI      
               

>>NP_055555 (OMIM: 268305,608546) eukaryotic initiation   (411 aa)
 initn: 715 init1: 379 opt: 858  Z-score: 1034.4  bits: 200.4 E(86401): 7.2e-51
Smith-Waterman score: 858; 35.9% identity (71.6% similar) in 373 aa overlap (46-417:40-407)

          20        30        40        50        60        70     
pF1KE2 EEEPQAPQESTPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECI
                                     :  . :. .:::.:   :::.:: .:.. :
NP_055 SGSARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAI
      10        20        30        40        50        60         

          80        90       100       110       120       130     
pF1KE2 PQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERF
        : : : ::. :..:: ::::.: ...:: ..    .. .:..  ::::: ::.:    .
NP_055 KQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLAL
      70        80        90       100       110       120         

         140       150       160       170       180       190     
pF1KE2 SKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLD
       . :: .:.  . .:: .. .: . :  .  :::.:::::.. ..: ::.  . .: .:::
NP_055 GDYM-NVQCHACIGGTNVGEDIRKLDYG-QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD
     130        140       150        160       170       180       

         200       210       220       230       240       250     
pF1KE2 ECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETK
       : :.::..  ..... ...:  :   : ...:::: ..:  .  ::: ::....:  . .
NP_055 EADEMLNK-GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD-E
       190        200       210       220       230       240      

         260       270        280       290       300       310    
pF1KE2 LTLHGLQQYYVKLKDSE-KNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAI
       :::.:..:..: ..  : :   : :: :.: ..:..:: .. ..   :.. . : :: . 
NP_055 LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS
         250       260       270       280       290       300     

          320       330       340       350       360       370    
pF1KE2 AIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRV
       ..:  : :.:: : ...:..   :.:..:....::.:. .:....:::.:.. . :.::.
NP_055 SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI
         310       320       330       340       350       360     

          380       390       400       410       420       
pF1KE2 ARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIEQSR
       .:.::.: ::.::.::... : .:: :... . ... :.: ..          
NP_055 GRSGRYGRKGVAINFVKND-DIRILRDIEQYYSTQIDEMPMNVADLI      
         370       380        390       400       410       

>>NP_004388 (OMIM: 600326) probable ATP-dependent RNA he  (483 aa)
 initn: 725 init1: 358 opt: 838  Z-score: 1009.3  bits: 196.0 E(86401): 1.8e-49
Smith-Waterman score: 838; 35.7% identity (69.7% similar) in 406 aa overlap (23-425:73-472)

                       10        20        30          40        50
pF1KE2         MAEQDVENDLLDYDEEEEPQAPQESTPAPPKK-DIKGSYV-SIHSSGFRDFL
                                     ...   :::   :: : : : ... :.:. 
NP_004 NQLKNTNTINNGTQQQAQSMTTTIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYC
             50        60        70        80        90       100  

               60        70        80        90       100       110
pF1KE2 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVN
       :: ::: .: . :.:.:: .:.: :: :. : :.: .::.: ::......  :....  .
NP_004 LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK
            110       120       130       140       150       160  

              120       130       140       150       160          
pF1KE2 GQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLK-KNCPHVVV
        .. ..:.  :::::.:.:.   . ::.: ..:: .  :: ... :  ...  .  :::.
NP_004 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDD--IMRLDDTVHVVI
            170       180       190       200         210       220

     170       180       190       200       210       220         
pF1KE2 GTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSAT
       .:::::: :...   .. .:. .:::: ::.: : :. . ...:.   :...: ...:::
NP_004 ATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ-DFVQIMEDIILTLPKNRQILLYSAT
              230       240       250        260       270         

     230       240       250       260       270       280         
pF1KE2 LSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQV
       .  ...    . .: :.:. . .:  :::.:. :::. . . .: . :  :.. :..:: 
NP_004 FPLSVQKFMNSHLQKPYEINLMEE--LTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQS
     280       290       300         310       320       330       

     290       300       310       320       330       340         
pF1KE2 IIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRG
       ::: .: ::   ::. . . ..  . ::  : ::.:   ...:..   : :: :.:: ::
NP_004 IIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRG
       340       350       360       370       380       390       

     350       360       370       380       390       400         
pF1KE2 MDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVN
       .::. ::.:.:.:.:. ..:::::..:.::::  ::::....  .:   :....... ..
NP_004 IDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT-YDDRFNLKSIEEQLGTE
       400       410       420       430        440       450      

     410       420                
pF1KE2 VAELPEEIDISTYIEQSR         
       .  .: .:: : :. .           
NP_004 IKPIPSNIDKSLYVAEYHSEPVEDEKP
        460       470       480   

>>NP_001244120 (OMIM: 600326) probable ATP-dependent RNA  (483 aa)
 initn: 725 init1: 358 opt: 838  Z-score: 1009.3  bits: 196.0 E(86401): 1.8e-49
Smith-Waterman score: 838; 35.7% identity (69.7% similar) in 406 aa overlap (23-425:73-472)

                       10        20        30          40        50
pF1KE2         MAEQDVENDLLDYDEEEEPQAPQESTPAPPKK-DIKGSYV-SIHSSGFRDFL
                                     ...   :::   :: : : : ... :.:. 
NP_001 NQLKNTNTINNGTQQQAQSMTTTIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYC
             50        60        70        80        90       100  

               60        70        80        90       100       110
pF1KE2 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVN
       :: ::: .: . :.:.:: .:.: :: :. : :.: .::.: ::......  :....  .
NP_001 LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK
            110       120       130       140       150       160  

              120       130       140       150       160          
pF1KE2 GQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLK-KNCPHVVV
        .. ..:.  :::::.:.:.   . ::.: ..:: .  :: ... :  ...  .  :::.
NP_001 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDD--IMRLDDTVHVVI
            170       180       190       200         210       220

     170       180       190       200       210       220         
pF1KE2 GTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSAT
       .:::::: :...   .. .:. .:::: ::.: : :. . ...:.   :...: ...:::
NP_001 ATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ-DFVQIMEDIILTLPKNRQILLYSAT
              230       240       250        260       270         

     230       240       250       260       270       280         
pF1KE2 LSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQV
       .  ...    . .: :.:. . .:  :::.:. :::. . . .: . :  :.. :..:: 
NP_001 FPLSVQKFMNSHLQKPYEINLMEE--LTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQS
     280       290       300         310       320       330       

     290       300       310       320       330       340         
pF1KE2 IIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRG
       ::: .: ::   ::. . . ..  . ::  : ::.:   ...:..   : :: :.:: ::
NP_001 IIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRG
       340       350       360       370       380       390       

     350       360       370       380       390       400         
pF1KE2 MDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVN
       .::. ::.:.:.:.:. ..:::::..:.::::  ::::....  .:   :....... ..
NP_001 IDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT-YDDRFNLKSIEEQLGTE
       400       410       420       430        440       450      

     410       420                
pF1KE2 VAELPEEIDISTYIEQSR         
       .  .: .:: : :. .           
NP_001 IKPIPSNIDKSLYVAEYHSEPVEDEKP
        460       470       480   

>>XP_005271474 (OMIM: 600326) PREDICTED: probable ATP-de  (483 aa)
 initn: 725 init1: 358 opt: 838  Z-score: 1009.3  bits: 196.0 E(86401): 1.8e-49
Smith-Waterman score: 838; 35.7% identity (69.7% similar) in 406 aa overlap (23-425:73-472)

                       10        20        30          40        50
pF1KE2         MAEQDVENDLLDYDEEEEPQAPQESTPAPPKK-DIKGSYV-SIHSSGFRDFL
                                     ...   :::   :: : : : ... :.:. 
XP_005 NQLKNTNTINNGTQQQAQSMTTTIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYC
             50        60        70        80        90       100  

               60        70        80        90       100       110
pF1KE2 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVN
       :: ::: .: . :.:.:: .:.: :: :. : :.: .::.: ::......  :....  .
XP_005 LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK
            110       120       130       140       150       160  

              120       130       140       150       160          
pF1KE2 GQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLK-KNCPHVVV
        .. ..:.  :::::.:.:.   . ::.: ..:: .  :: ... :  ...  .  :::.
XP_005 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDD--IMRLDDTVHVVI
            170       180       190       200         210       220

     170       180       190       200       210       220         
pF1KE2 GTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSAT
       .:::::: :...   .. .:. .:::: ::.: : :. . ...:.   :...: ...:::
XP_005 ATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ-DFVQIMEDIILTLPKNRQILLYSAT
              230       240       250        260       270         

     230       240       250       260       270       280         
pF1KE2 LSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQV
       .  ...    . .: :.:. . .:  :::.:. :::. . . .: . :  :.. :..:: 
XP_005 FPLSVQKFMNSHLQKPYEINLMEE--LTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQS
     280       290       300         310       320       330       

     290       300       310       320       330       340         
pF1KE2 IIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRG
       ::: .: ::   ::. . . ..  . ::  : ::.:   ...:..   : :: :.:: ::
XP_005 IIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRG
       340       350       360       370       380       390       

     350       360       370       380       390       400         
pF1KE2 MDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVN
       .::. ::.:.:.:.:. ..:::::..:.::::  ::::....  .:   :....... ..
XP_005 IDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT-YDDRFNLKSIEEQLGTE
       400       410       420       430        440       450      

     410       420                
pF1KE2 VAELPEEIDISTYIEQSR         
       .  .: .:: : :. .           
XP_005 IKPIPSNIDKSLYVAEYHSEPVEDEKP
        460       470       480   

>>NP_009135 (OMIM: 606168) probable ATP-dependent RNA he  (824 aa)
 initn: 775 init1: 370 opt: 776  Z-score: 931.1  bits: 182.3 E(86401): 4.1e-45
Smith-Waterman score: 783; 34.1% identity (65.9% similar) in 419 aa overlap (20-417:26-440)

                     10        20         30                   40  
pF1KE2       MAEQDVENDLLDYDEEEEPQAPQ-ESTPAPPK-----KDIK------GSYVSIH
                                :.:  : ::.: .     .:..      :. .  .
NP_009 MAAAFEASGALAAVATAMPAEHVAVQVPAPEPTPGPVRILRTAQDLSSPRTRTGDVLLAE
               10        20        30        40        50        60

             50        60        70        80        90       100  
pF1KE2 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT
        . :...::.  .:...   :::.:: :: . :: .  :.:.. ::::: ::: ::   .
NP_009 PADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIA
               70        80        90       100       110       120

            110       120       130       140       150       160  
pF1KE2 LQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKK
       :...   : .. .:..  :::.: :: .    ..  : ...  ::.::  ...:.  :::
NP_009 LDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK
              130       140       150       160       170       180

            170       180       190       200       210       220  
pF1KE2 NCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQ
        : :..::.::::  :..   ..  ... :.::: ::.::. ....... :.   :  ::
NP_009 -C-HIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQ
                190       200       210       220       230        

            230       240       250       260       270            
pF1KE2 CMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDS---------EK
        .  :::  . .  .  :.:.::  : ... .  .: ::.::: :. .:         ::
NP_009 MLAVSATYPEFLANALTKYMRDPTFVRLNS-SDPSLIGLKQYY-KVVNSYPLAHKVFEEK
      240       250       260        270       280        290      

           280       290       300       310       320       330   
pF1KE2 NRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFK
       ...: .:.. . :::...: .  .: . ::..:  ..:::  :  .: :..::. . ..:
NP_009 TQHLQELFSRIPFNQALVFSNLHSRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLK
        300       310       320       330       340       350      

           340       350       360       370       380       390   
pF1KE2 DFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE
        :. :.:..:.: .::.: :.::.: : :.: : .::.::..::::::: ::..:.    
NP_009 HFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRG
        360       370       380       390       400       410      

           400       410       420                                 
pF1KE2 NDAKILNDVQDRFEVNVAELPEEIDISTYIEQSR                          
       .. ...  . .. ..:.  ::. :                                    
NP_009 EEENMMMRIAQKCNINLLPLPDPIPSGLMEECVDWDVEVKAAVHTYGIASVPNQPLKKQI
        420       430       440       450       460       470      

>>NP_057439 (OMIM: 615428) probable ATP-dependent RNA he  (455 aa)
 initn: 649 init1: 315 opt: 735  Z-score: 885.3  bits: 173.0 E(86401): 1.4e-42
Smith-Waterman score: 735; 32.3% identity (68.6% similar) in 405 aa overlap (17-418:5-394)

               10        20         30        40        50         
pF1KE2 MAEQDVENDLLDYDEEEEPQAPQE-STPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAI
                       :: ..: : : :   ... :          :.:. .   : .: 
NP_057             MAAPEEHDSPTEASQPIVEEEETKT---------FKDLGVTDVLCEAC
                           10        20                 30         

      60        70        80        90       100       110         
pF1KE2 VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMC
        . :. .:...: : :: :. : :..  :..: :::..:.:  :. .  .  .. .::. 
NP_057 DQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLT
      40        50        60        70        80        90         

     120       130       140       150        160       170        
pF1KE2 HTRELAFQISKEYERFSKYMPSVKVSVFFGGL-SIKKDEEVLKKNCPHVVVGTPGRILAL
        :::::::::...: ... . .:. .:. ::. :....  . ::  ::....::::..  
NP_057 PTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALAKK--PHIIIATPGRLIDH
     100       110        120       130       140         150      

      180        190       200       210       220       230       
pF1KE2 VRN-RSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPV
       ..: ..:.:. .:..:.:: :..:. .:.. .:..:... :.... ..::::..: .. .
NP_057 LENTKGFNLRALKYLVMDEADRILN-MDFETEVDKILKVIPRDRKTFLFSATMTKKVQKL
        160       170       180        190       200       210     

       240       250       260       270       280       290       
pF1KE2 CRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVIIFVKSVQ
        :  ...:..  :... . :.. :::::. . .. :.  :  .:. :  :. .:: .. .
NP_057 QRAALKNPVKCAVSSKYQ-TVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCN
         220       230        240       250       260       270    

       300       310       320       330       340       350       
pF1KE2 RCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI
         .  : :: . .: :: .:  :.: .::.  ..::   : ::.::.. .::.:: .:..
NP_057 NTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDV
          280       290       300       310       320       330    

       360       370       380       390       400       410       
pF1KE2 VFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEI
       : :.:.:  :  :.:::.:..: : .: :::::. . :..... ..  .  ..  .: . 
NP_057 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVT-QYDVELFQRIEHLIGKKLPGFPTQD
          340       350       360        370       380       390   

       420                                                         
pF1KE2 DISTYIEQSR                                                  
       :                                                           
NP_057 DEVMMLTERVAEAQRFARMELREHGEKKKRSREDAGDNDDTEGAIGVRNKVAGGKMKKRK
           400       410       420       430       440       450   




427 residues in 1 query   sequences
61573307 residues in 86401 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Mar  1 16:48:51 2017 done: Wed Mar  1 16:48:53 2017
 Total Scan time:  6.600 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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