Result of FASTA (omim) for pF1KB6750
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6750, 145 aa
  1>>>pF1KB6750 145 - 145 aa - 145 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0202+/-0.000317; mu= 13.1868+/- 0.020
 mean_var=60.2110+/-12.297, 0's: 0 Z-trim(115.3): 9  B-trim: 0 in 0/50
 Lambda= 0.165286
 statistics sampled from 25591 (25598) to 25591 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.3), width:  16
 Scan time:  4.690

The best scores are:                                      opt bits E(85289)
NP_001308413 (OMIM: 105650,603474) 40S ribosomal p ( 145)  957 236.0 1.6e-62
NP_001308412 (OMIM: 105650,603474) 40S ribosomal p ( 145)  957 236.0 1.6e-62
NP_001013 (OMIM: 105650,603474) 40S ribosomal prot ( 145)  957 236.0 1.6e-62
XP_016882602 (OMIM: 105650,603474) PREDICTED: 40S  ( 193)  915 226.1 2.1e-59
NP_001308414 (OMIM: 105650,603474) 40S ribosomal p ( 156)  381 98.7 3.8e-21


>>NP_001308413 (OMIM: 105650,603474) 40S ribosomal prote  (145 aa)
 initn: 957 init1: 957 opt: 957  Z-score: 1243.5  bits: 236.0 E(85289): 1.6e-62
Smith-Waterman score: 957; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KB6 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG
               70        80        90       100       110       120

              130       140     
pF1KB6 RKLTPQGQRDLDRIAGQVAAANKKH
       :::::::::::::::::::::::::
NP_001 RKLTPQGQRDLDRIAGQVAAANKKH
              130       140     

>>NP_001308412 (OMIM: 105650,603474) 40S ribosomal prote  (145 aa)
 initn: 957 init1: 957 opt: 957  Z-score: 1243.5  bits: 236.0 E(85289): 1.6e-62
Smith-Waterman score: 957; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KB6 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG
               70        80        90       100       110       120

              130       140     
pF1KB6 RKLTPQGQRDLDRIAGQVAAANKKH
       :::::::::::::::::::::::::
NP_001 RKLTPQGQRDLDRIAGQVAAANKKH
              130       140     

>>NP_001013 (OMIM: 105650,603474) 40S ribosomal protein   (145 aa)
 initn: 957 init1: 957 opt: 957  Z-score: 1243.5  bits: 236.0 E(85289): 1.6e-62
Smith-Waterman score: 957; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KB6 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG
               70        80        90       100       110       120

              130       140     
pF1KB6 RKLTPQGQRDLDRIAGQVAAANKKH
       :::::::::::::::::::::::::
NP_001 RKLTPQGQRDLDRIAGQVAAANKKH
              130       140     

>>XP_016882602 (OMIM: 105650,603474) PREDICTED: 40S ribo  (193 aa)
 initn: 915 init1: 915 opt: 915  Z-score: 1187.5  bits: 226.1 E(85289): 2.1e-59
Smith-Waterman score: 915; 98.6% identity (98.6% similar) in 141 aa overlap (1-141:1-141)

               10        20        30        40        50        60
pF1KB6 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG
               70        80        90       100       110       120

              130       140                                        
pF1KB6 RKLTPQGQRDLDRIAGQVAAANKKH                                   
       ::::::::::::::::::  :                                       
XP_016 RKLTPQGQRDLDRIAGQVRPAFGVGLGPLVAAQAFPKPILCQVDLFPSLEGTAQGAGGVR
              130       140       150       160       170       180

>>NP_001308414 (OMIM: 105650,603474) 40S ribosomal prote  (156 aa)
 initn: 381 init1: 381 opt: 381  Z-score: 500.7  bits: 98.7 E(85289): 3.8e-21
Smith-Waterman score: 381; 100.0% identity (100.0% similar) in 57 aa overlap (1-57:1-57)

               10        20        30        40        50        60
pF1KB6 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAAST
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
NP_001 MPGVTVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAGEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGG
                                                                   
NP_001 LSFHSAAPVPPGWRWGWLHDQDLWGTSEKRRHAQPLQPRLQECGPPGPPSPGGAENGGKG
               70        80        90       100       110       120




145 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:54:27 2016 done: Sat Nov  5 13:54:28 2016
 Total Scan time:  4.690 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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