Result of FASTA (omim) for pF1KE0101
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0101, 182 aa
  1>>>pF1KE0101 182 - 182 aa - 182 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8914+/-0.000385; mu= 14.3843+/- 0.024
 mean_var=52.5005+/-10.887, 0's: 0 Z-trim(111.1): 18  B-trim: 287 in 1/51
 Lambda= 0.177008
 statistics sampled from 19584 (19601) to 19584 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.61), E-opt: 0.2 (0.23), width:  16
 Scan time:  5.340

The best scores are:                                      opt bits E(85289)
NP_057310 (OMIM: 606932) vacuolar protein sorting- ( 182) 1206 315.8 2.5e-86
XP_006719523 (OMIM: 606932) PREDICTED: vacuolar pr ( 183) 1199 314.0 8.6e-86
XP_011536786 (OMIM: 606932) PREDICTED: vacuolar pr ( 183) 1199 314.0 8.6e-86
XP_016874947 (OMIM: 606932) PREDICTED: vacuolar pr ( 183) 1199 314.0 8.6e-86
XP_006719522 (OMIM: 606932) PREDICTED: vacuolar pr ( 183) 1199 314.0 8.6e-86
NP_476528 (OMIM: 606932) vacuolar protein sorting- ( 186) 1199 314.0 8.7e-86
XP_016874946 (OMIM: 606932) PREDICTED: vacuolar pr ( 214) 1199 314.0 9.9e-86
NP_001269079 (OMIM: 606932) vacuolar protein sorti ( 214) 1199 314.0 9.9e-86
NP_001269080 (OMIM: 606932) vacuolar protein sorti (  91)  453 123.3   1e-28
XP_016874948 (OMIM: 606932) PREDICTED: vacuolar pr ( 123)  446 121.6 4.7e-28
XP_011539754 (OMIM: 611578) PREDICTED: ferric-chel ( 503)  124 39.7   0.009


>>NP_057310 (OMIM: 606932) vacuolar protein sorting-asso  (182 aa)
 initn: 1206 init1: 1206 opt: 1206  Z-score: 1670.9  bits: 315.8 E(85289): 2.5e-86
Smith-Waterman score: 1206; 99.5% identity (99.5% similar) in 182 aa overlap (1-182:1-182)

               10        20        30        40        50        60
pF1KE0 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKSE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
NP_057 GDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 AFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 AFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYK
              130       140       150       160       170       180

         
pF1KE0 KP
       ::
NP_057 KP
         

>>XP_006719523 (OMIM: 606932) PREDICTED: vacuolar protei  (183 aa)
 initn: 1199 init1: 1199 opt: 1199  Z-score: 1661.2  bits: 314.0 E(85289): 8.6e-86
Smith-Waterman score: 1199; 99.4% identity (99.4% similar) in 181 aa overlap (2-182:3-183)

                10        20        30        40        50         
pF1KE0  MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIV
         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MKLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIV
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE0 RGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
XP_006 RGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKF
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE0 EAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEY
              130       140       150       160       170       180

     180  
pF1KE0 KKP
       :::
XP_006 KKP
          

>>XP_011536786 (OMIM: 606932) PREDICTED: vacuolar protei  (183 aa)
 initn: 1199 init1: 1199 opt: 1199  Z-score: 1661.2  bits: 314.0 E(85289): 8.6e-86
Smith-Waterman score: 1199; 99.4% identity (99.4% similar) in 181 aa overlap (2-182:3-183)

                10        20        30        40        50         
pF1KE0  MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIV
         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIV
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE0 RGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
XP_011 RGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKF
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE0 EAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEY
              130       140       150       160       170       180

     180  
pF1KE0 KKP
       :::
XP_011 KKP
          

>>XP_016874947 (OMIM: 606932) PREDICTED: vacuolar protei  (183 aa)
 initn: 1199 init1: 1199 opt: 1199  Z-score: 1661.2  bits: 314.0 E(85289): 8.6e-86
Smith-Waterman score: 1199; 99.4% identity (99.4% similar) in 181 aa overlap (2-182:3-183)

                10        20        30        40        50         
pF1KE0  MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIV
         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIV
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE0 RGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
XP_016 RGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKF
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE0 EAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEY
              130       140       150       160       170       180

     180  
pF1KE0 KKP
       :::
XP_016 KKP
          

>>XP_006719522 (OMIM: 606932) PREDICTED: vacuolar protei  (183 aa)
 initn: 1199 init1: 1199 opt: 1199  Z-score: 1661.2  bits: 314.0 E(85289): 8.6e-86
Smith-Waterman score: 1199; 99.4% identity (99.4% similar) in 181 aa overlap (2-182:3-183)

                10        20        30        40        50         
pF1KE0  MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIV
         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MKLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIV
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE0 RGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
XP_006 RGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKF
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE0 EAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEY
              130       140       150       160       170       180

     180  
pF1KE0 KKP
       :::
XP_006 KKP
          

>>NP_476528 (OMIM: 606932) vacuolar protein sorting-asso  (186 aa)
 initn: 1199 init1: 1199 opt: 1199  Z-score: 1661.1  bits: 314.0 E(85289): 8.7e-86
Smith-Waterman score: 1199; 99.4% identity (99.4% similar) in 181 aa overlap (2-182:6-186)

                   10        20        30        40        50      
pF1KE0     MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDV
            :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 MAGHRLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDV
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KE0 HIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 HIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHT
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KE0 HKSEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVER
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 HKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVER
              130       140       150       160       170       180

        180  
pF1KE0 IEYKKP
       ::::::
NP_476 IEYKKP
             

>>XP_016874946 (OMIM: 606932) PREDICTED: vacuolar protei  (214 aa)
 initn: 1199 init1: 1199 opt: 1199  Z-score: 1660.2  bits: 314.0 E(85289): 9.9e-86
Smith-Waterman score: 1199; 99.4% identity (99.4% similar) in 181 aa overlap (2-182:34-214)

                                            10        20        30 
pF1KE0                              MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKI
                                     ::::::::::::::::::::::::::::::
XP_016 CALRGRDLALAIAGTVSFHGLLRLFRAGHRLVLVLGDLHIPHRCNSLPAKFKKLLVPGKI
            10        20        30        40        50        60   

              40        50        60        70        80        90 
pF1KE0 QHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVI
            70        80        90       100       110       120   

             100       110       120       130       140       150 
pF1KE0 PWGDMASLALLQRQFDVDILISGHTHKSEAFEHENKFYINPGSATGAYNALETNIIPSFV
       ::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::
XP_016 PWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFV
           130       140       150       160       170       180   

             160       170       180  
pF1KE0 LMDIQASTVVTYVYQLIGDDVKVERIEYKKP
       :::::::::::::::::::::::::::::::
XP_016 LMDIQASTVVTYVYQLIGDDVKVERIEYKKP
           190       200       210    

>>NP_001269079 (OMIM: 606932) vacuolar protein sorting-a  (214 aa)
 initn: 1199 init1: 1199 opt: 1199  Z-score: 1660.2  bits: 314.0 E(85289): 9.9e-86
Smith-Waterman score: 1199; 99.4% identity (99.4% similar) in 181 aa overlap (2-182:34-214)

                                            10        20        30 
pF1KE0                              MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKI
                                     ::::::::::::::::::::::::::::::
NP_001 CALRGRDLALAIAGTVSFHGLLRLFRAGHRLVLVLGDLHIPHRCNSLPAKFKKLLVPGKI
            10        20        30        40        50        60   

              40        50        60        70        80        90 
pF1KE0 QHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVI
            70        80        90       100       110       120   

             100       110       120       130       140       150 
pF1KE0 PWGDMASLALLQRQFDVDILISGHTHKSEAFEHENKFYINPGSATGAYNALETNIIPSFV
       ::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::
NP_001 PWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFV
           130       140       150       160       170       180   

             160       170       180  
pF1KE0 LMDIQASTVVTYVYQLIGDDVKVERIEYKKP
       :::::::::::::::::::::::::::::::
NP_001 LMDIQASTVVTYVYQLIGDDVKVERIEYKKP
           190       200       210    

>>NP_001269080 (OMIM: 606932) vacuolar protein sorting-a  (91 aa)
 initn: 458 init1: 446 opt: 453  Z-score: 636.4  bits: 123.3 E(85289): 1e-28
Smith-Waterman score: 453; 76.9% identity (85.7% similar) in 91 aa overlap (1-91:1-86)

               10        20        30        40        50        60
pF1KE0 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKSE
       :::::. .:   ... :  .  :.  ::  .                             
NP_001 GDFDEK-HY---SIICVDGYP-GFYSGHLCVSANWR                        
                   70         80        90                         

              130       140       150       160       170       180
pF1KE0 AFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYK

>>XP_016874948 (OMIM: 606932) PREDICTED: vacuolar protei  (123 aa)
 initn: 451 init1: 439 opt: 446  Z-score: 624.7  bits: 121.6 E(85289): 4.7e-28
Smith-Waterman score: 446; 76.7% identity (85.6% similar) in 90 aa overlap (2-91:34-118)

                                            10        20        30 
pF1KE0                              MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKI
                                     ::::::::::::::::::::::::::::::
XP_016 CALRGRDLALAIAGTVSFHGLLRLFRAGHRLVLVLGDLHIPHRCNSLPAKFKKLLVPGKI
            10        20        30        40        50        60   

              40        50        60        70        80        90 
pF1KE0 QHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVI
       ::::::::::::::::::::::::::::::::::. .:   ... :  .  :.  ::  .
XP_016 QHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDEK-HY---SIICVDGYP-GFYSGHLCV
            70        80        90        100           110        

             100       110       120       130       140       150 
pF1KE0 PWGDMASLALLQRQFDVDILISGHTHKSEAFEHENKFYINPGSATGAYNALETNIIPSFV
                                                                   
XP_016 SANWR                                                       
      120                                                          




182 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:12:36 2016 done: Fri Nov  4 03:12:37 2016
 Total Scan time:  5.340 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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