Result of FASTA (omim) for pF1KB8135
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8135, 497 aa
  1>>>pF1KB8135 497 - 497 aa - 497 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2840+/-0.000321; mu= 6.0598+/- 0.020
 mean_var=176.1848+/-36.270, 0's: 0 Z-trim(122.0): 159  B-trim: 942 in 1/61
 Lambda= 0.096625
 statistics sampled from 39223 (39398) to 39223 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.462), width:  16
 Scan time: 11.630

The best scores are:                                      opt bits E(85289)
NP_066288 (OMIM: 602635,615828) deformed epidermal ( 565) 3339 477.3 4.8e-134
XP_011518144 (OMIM: 602635,615828) PREDICTED: defo ( 551) 3111 445.6 1.8e-124
NP_001280563 (OMIM: 602635,615828) deformed epider ( 490) 1099 165.0 4.3e-40
XP_016869430 (OMIM: 133435) PREDICTED: protein CBF ( 361)  265 48.7 3.4e-05
XP_016869429 (OMIM: 133435) PREDICTED: protein CBF ( 382)  265 48.7 3.5e-05
XP_016869428 (OMIM: 133435) PREDICTED: protein CBF ( 382)  265 48.7 3.5e-05
XP_016869426 (OMIM: 133435) PREDICTED: protein CBF ( 567)  265 48.8 4.8e-05
NP_783553 (OMIM: 133435) protein CBFA2T1 isoform C ( 567)  265 48.8 4.8e-05
XP_016869424 (OMIM: 133435) PREDICTED: protein CBF ( 567)  265 48.8 4.8e-05
XP_016869425 (OMIM: 133435) PREDICTED: protein CBF ( 567)  265 48.8 4.8e-05
XP_016869423 (OMIM: 133435) PREDICTED: protein CBF ( 567)  265 48.8 4.8e-05
XP_011515655 (OMIM: 133435) PREDICTED: protein CBF ( 567)  265 48.8 4.8e-05
XP_006716739 (OMIM: 133435) PREDICTED: protein CBF ( 567)  265 48.8 4.8e-05
NP_783554 (OMIM: 133435) protein CBFA2T1 isoform C ( 567)  265 48.8 4.8e-05
XP_016869421 (OMIM: 133435) PREDICTED: protein CBF ( 577)  265 48.8 4.9e-05
NP_004340 (OMIM: 133435) protein CBFA2T1 isoform A ( 577)  265 48.8 4.9e-05
NP_001185561 (OMIM: 133435) protein CBFA2T1 isofor ( 577)  265 48.8 4.9e-05
XP_011515654 (OMIM: 133435) PREDICTED: protein CBF ( 577)  265 48.8 4.9e-05
XP_016869422 (OMIM: 133435) PREDICTED: protein CBF ( 577)  265 48.8 4.9e-05
NP_001185554 (OMIM: 133435) protein CBFA2T1 isofor ( 577)  265 48.8 4.9e-05
NP_001185562 (OMIM: 133435) protein CBFA2T1 isofor ( 584)  265 48.8 4.9e-05
NP_783552 (OMIM: 133435) protein CBFA2T1 isoform B ( 604)  265 48.8 5.1e-05
XP_011515653 (OMIM: 133435) PREDICTED: protein CBF ( 604)  265 48.8 5.1e-05
NP_001185558 (OMIM: 133435) protein CBFA2T1 isofor ( 604)  265 48.8 5.1e-05
XP_016869420 (OMIM: 133435) PREDICTED: protein CBF ( 604)  265 48.8 5.1e-05
NP_001185559 (OMIM: 133435) protein CBFA2T1 isofor ( 604)  265 48.8 5.1e-05
NP_001185555 (OMIM: 133435) protein CBFA2T1 isofor ( 604)  265 48.8 5.1e-05
NP_001185560 (OMIM: 133435) protein CBFA2T1 isofor ( 604)  265 48.8 5.1e-05
NP_001185556 (OMIM: 133435) protein CBFA2T1 isofor ( 604)  265 48.8 5.1e-05
NP_001185557 (OMIM: 133435) protein CBFA2T1 isofor ( 604)  265 48.8 5.1e-05
NP_001185563 (OMIM: 133435) protein CBFA2T1 isofor ( 615)  265 48.8 5.1e-05
XP_016869419 (OMIM: 133435) PREDICTED: protein CBF ( 632)  265 48.9 5.3e-05
NP_001185608 (OMIM: 133435) protein CBFA2T1 isofor ( 663)  265 48.9 5.5e-05
NP_787127 (OMIM: 603870) protein CBFA2T3 isoform 2 ( 567)  250 46.7 0.00021
XP_005256380 (OMIM: 603870) PREDICTED: protein CBF ( 628)  250 46.8 0.00022
NP_005178 (OMIM: 603870) protein CBFA2T3 isoform 1 ( 653)  250 46.8 0.00023
NP_001193630 (OMIM: 604585) nuclear autoantigen Sp ( 688)  231 44.1  0.0015
NP_003104 (OMIM: 604585) nuclear autoantigen Sp-10 ( 879)  233 44.5  0.0015
XP_016883614 (OMIM: 603672) PREDICTED: protein CBF ( 377)  225 43.1  0.0017
XP_011527409 (OMIM: 603672) PREDICTED: protein CBF ( 378)  225 43.1  0.0017
XP_016883613 (OMIM: 603672) PREDICTED: protein CBF ( 378)  225 43.1  0.0017
NP_001073860 (OMIM: 604585) nuclear autoantigen Sp ( 885)  231 44.2  0.0018
XP_011527404 (OMIM: 603672) PREDICTED: protein CBF ( 574)  225 43.3  0.0023
XP_016883610 (OMIM: 603672) PREDICTED: protein CBF ( 575)  225 43.3  0.0023
NP_001034798 (OMIM: 603672) protein CBFA2T2 isofor ( 575)  225 43.3  0.0023
XP_011527405 (OMIM: 603672) PREDICTED: protein CBF ( 575)  225 43.3  0.0023
XP_016883611 (OMIM: 603672) PREDICTED: protein CBF ( 594)  225 43.3  0.0024
NP_001028171 (OMIM: 603672) protein CBFA2T2 isofor ( 595)  225 43.3  0.0024
NP_005084 (OMIM: 603672) protein CBFA2T2 isoform M ( 604)  225 43.3  0.0024
XP_011527403 (OMIM: 603672) PREDICTED: protein CBF ( 614)  225 43.3  0.0024


>>NP_066288 (OMIM: 602635,615828) deformed epidermal aut  (565 aa)
 initn: 3339 init1: 3339 opt: 3339  Z-score: 2527.5  bits: 477.3 E(85289): 4.8e-134
Smith-Waterman score: 3339; 100.0% identity (100.0% similar) in 497 aa overlap (1-497:69-565)

                                             10        20        30
pF1KB8                               MAAEPGHMDMGAEALPGPDEAAAAAAFAEV
                                     ::::::::::::::::::::::::::::::
NP_066 EPVLSRDEDSEEDADSEAERETPRVTAVAVMAAEPGHMDMGAEALPGPDEAAAAAAFAEV
       40        50        60        70        80        90        

               40        50        60        70        80        90
pF1KB8 TTVTVANVGAAADNVFTTSVANAASISGHVLSGRTALQIGDSLNTEKATLIVVHTDGSIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 TTVTVANVGAAADNVFTTSVANAASISGHVLSGRTALQIGDSLNTEKATLIVVHTDGSIV
      100       110       120       130       140       150        

              100       110       120       130       140       150
pF1KB8 ETTGLKGPAAPLTPGPQSPPTPLAPGQEKGGTKYNWDPSVYDSELPVRCRNISGTLYKNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 ETTGLKGPAAPLTPGPQSPPTPLAPGQEKGGTKYNWDPSVYDSELPVRCRNISGTLYKNR
      160       170       180       190       200       210        

              160       170       180       190       200       210
pF1KB8 LGSGGRGRCIKQGENWYSPTEFEAMAGRASSKDWKRSIRYAGRPLQCLIQDGILNPHAAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 LGSGGRGRCIKQGENWYSPTEFEAMAGRASSKDWKRSIRYAGRPLQCLIQDGILNPHAAS
      220       230       240       250       260       270        

              220       230       240       250       260       270
pF1KB8 CTCAACCDDMTLSGPVRLFVPYKRRKKENELPTTPVKKDSPKNITLLPATAATTFTVTPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 CTCAACCDDMTLSGPVRLFVPYKRRKKENELPTTPVKKDSPKNITLLPATAATTFTVTPS
      280       290       300       310       320       330        

              280       290       300       310       320       330
pF1KB8 GQITTSGALTFDRASTVEATAVISESPAQGDVFAGATVQEASVQPPCRASHPEPHYPGYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 GQITTSGALTFDRASTVEATAVISESPAQGDVFAGATVQEASVQPPCRASHPEPHYPGYQ
      340       350       360       370       380       390        

              340       350       360       370       380       390
pF1KB8 DSCQIAPFPEAALPTSHPKIVLTSLPALAVPPPTPTKAAPPALVNGLELSEPRSWLYLEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 DSCQIAPFPEAALPTSHPKIVLTSLPALAVPPPTPTKAAPPALVNGLELSEPRSWLYLEE
      400       410       420       430       440       450        

              400       410       420       430       440       450
pF1KB8 MVNSLLNTAQQLKTLFEQAKHASTYREAATNQAKIHADAERKEQSCVNCGREAMSECTGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MVNSLLNTAQQLKTLFEQAKHASTYREAATNQAKIHADAERKEQSCVNCGREAMSECTGC
      460       470       480       490       500       510        

              460       470       480       490       
pF1KB8 HKVNYCSTFCQRKDWKDHQHICGQSAAVTVQADEVHVAESVMEKVTV
       :::::::::::::::::::::::::::::::::::::::::::::::
NP_066 HKVNYCSTFCQRKDWKDHQHICGQSAAVTVQADEVHVAESVMEKVTV
      520       530       540       550       560     

>>XP_011518144 (OMIM: 602635,615828) PREDICTED: deformed  (551 aa)
 initn: 3111 init1: 3111 opt: 3111  Z-score: 2355.8  bits: 445.6 E(85289): 1.8e-124
Smith-Waterman score: 3111; 100.0% identity (100.0% similar) in 463 aa overlap (1-463:69-531)

                                             10        20        30
pF1KB8                               MAAEPGHMDMGAEALPGPDEAAAAAAFAEV
                                     ::::::::::::::::::::::::::::::
XP_011 EPVLSRDEDSEEDADSEAERETPRVTAVAVMAAEPGHMDMGAEALPGPDEAAAAAAFAEV
       40        50        60        70        80        90        

               40        50        60        70        80        90
pF1KB8 TTVTVANVGAAADNVFTTSVANAASISGHVLSGRTALQIGDSLNTEKATLIVVHTDGSIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TTVTVANVGAAADNVFTTSVANAASISGHVLSGRTALQIGDSLNTEKATLIVVHTDGSIV
      100       110       120       130       140       150        

              100       110       120       130       140       150
pF1KB8 ETTGLKGPAAPLTPGPQSPPTPLAPGQEKGGTKYNWDPSVYDSELPVRCRNISGTLYKNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ETTGLKGPAAPLTPGPQSPPTPLAPGQEKGGTKYNWDPSVYDSELPVRCRNISGTLYKNR
      160       170       180       190       200       210        

              160       170       180       190       200       210
pF1KB8 LGSGGRGRCIKQGENWYSPTEFEAMAGRASSKDWKRSIRYAGRPLQCLIQDGILNPHAAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGSGGRGRCIKQGENWYSPTEFEAMAGRASSKDWKRSIRYAGRPLQCLIQDGILNPHAAS
      220       230       240       250       260       270        

              220       230       240       250       260       270
pF1KB8 CTCAACCDDMTLSGPVRLFVPYKRRKKENELPTTPVKKDSPKNITLLPATAATTFTVTPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CTCAACCDDMTLSGPVRLFVPYKRRKKENELPTTPVKKDSPKNITLLPATAATTFTVTPS
      280       290       300       310       320       330        

              280       290       300       310       320       330
pF1KB8 GQITTSGALTFDRASTVEATAVISESPAQGDVFAGATVQEASVQPPCRASHPEPHYPGYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GQITTSGALTFDRASTVEATAVISESPAQGDVFAGATVQEASVQPPCRASHPEPHYPGYQ
      340       350       360       370       380       390        

              340       350       360       370       380       390
pF1KB8 DSCQIAPFPEAALPTSHPKIVLTSLPALAVPPPTPTKAAPPALVNGLELSEPRSWLYLEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSCQIAPFPEAALPTSHPKIVLTSLPALAVPPPTPTKAAPPALVNGLELSEPRSWLYLEE
      400       410       420       430       440       450        

              400       410       420       430       440       450
pF1KB8 MVNSLLNTAQQLKTLFEQAKHASTYREAATNQAKIHADAERKEQSCVNCGREAMSECTGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVNSLLNTAQQLKTLFEQAKHASTYREAATNQAKIHADAERKEQSCVNCGREAMSECTGC
      460       470       480       490       500       510        

              460       470       480       490       
pF1KB8 HKVNYCSTFCQRKDWKDHQHICGQSAAVTVQADEVHVAESVMEKVTV
       :::::::::::::                                  
XP_011 HKVNYCSTFCQRKSEVLNSPAITVELSGFCFCF              
      520       530       540       550               

>>NP_001280563 (OMIM: 602635,615828) deformed epidermal   (490 aa)
 initn: 2087 init1: 1099 opt: 1099  Z-score: 840.8  bits: 165.0 E(85289): 4.3e-40
Smith-Waterman score: 2374; 77.7% identity (78.9% similar) in 511 aa overlap (1-497:69-490)

                                             10        20        30
pF1KB8                               MAAEPGHMDMGAEALPGPDEAAAAAAFAEV
                                     ::::::::::::::::::::::::::::::
NP_001 EPVLSRDEDSEEDADSEAERETPRVTAVAVMAAEPGHMDMGAEALPGPDEAAAAAAFAEV
       40        50        60        70        80        90        

               40        50        60        70        80        90
pF1KB8 TTVTVANVGAAADNVFTTSVANAASISGHVLSGRTALQIGDSLNTEKATLIVVHTDGSIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTVTVANVGAAADNVFTTSVANAASISGHVLSGRTALQIGDSLNTEKATLIVVHTDGSIV
      100       110       120       130       140       150        

              100       110       120       130       140       150
pF1KB8 ETTGLKGPAAPLTPGPQSPPTPLAPGQEKGGTKYNWDPSVYDSELPVRCRNISGTLYKNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETTGLKGPAAPLTPGPQSPPTPLAPGQEKGGTKYNWDPSVYDSELPVRCRNISGTLYKNR
      160       170       180       190       200       210        

              160       170       180       190       200       210
pF1KB8 LGSGGRGRCIKQGENWYSPTEFEAMAGRASSKDWKRSIRYAGRPLQCLIQDGILNPHAAS
       ::::           :                : :        : .::..          
NP_001 LGSG-----------W----------------DLK--------PSRCLLH----------
      220                                          230             

              220       230       240       250       260       270
pF1KB8 CTCAACCDDMTLSGPVRLFVPYKRRKKENELPTTPVKKDSPKNITLLPATAATTFTVTPS
            ::                ::   ..:                       .:::::
NP_001 ----LCC--------------LLRR---HDL-----------------------ITVTPS
                             240                                   

              280       290       300       310       320       330
pF1KB8 GQITTSGALTFDRASTVEATAVISESPAQGDVFAGATVQEASVQPPCRASHPEPHYPGYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GQITTSGALTFDRASTVEATAVISESPAQGDVFAGATVQEASVQPPCRASHPEPHYPGYQ
     250       260       270       280       290       300         

              340       350       360       370       380       390
pF1KB8 DSCQIAPFPEAALPTSHPKIVLTSLPALAVPPPTPTKAAPPALVNGLELSEPRSWLYLEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSCQIAPFPEAALPTSHPKIVLTSLPALAVPPPTPTKAAPPALVNGLELSEPRSWLYLEE
     310       320       330       340       350       360         

              400       410       420       430                    
pF1KB8 MVNSLLNTAQQLKTLFEQAKHASTYREAATNQAKIHADAERKE--------------QSC
       :::::::::::::::::::::::::::::::::::::::::::              :::
NP_001 MVNSLLNTAQQLKTLFEQAKHASTYREAATNQAKIHADAERKEVIHPPRLPKVLGLQQSC
     370       380       390       400       410       420         

        440       450       460       470       480       490      
pF1KB8 VNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSAAVTVQADEVHVAESVMEKVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSAAVTVQADEVHVAESVMEKVT
     430       440       450       460       470       480         

        
pF1KB8 V
       :
NP_001 V
     490

>>XP_016869430 (OMIM: 133435) PREDICTED: protein CBFA2T1  (361 aa)
 initn: 283 init1: 261 opt: 265  Z-score: 214.4  bits: 48.7 E(85289): 3.4e-05
Smith-Waterman score: 265; 35.7% identity (58.6% similar) in 140 aa overlap (356-491:193-327)

         330       340       350       360       370       380     
pF1KB8 YPGYQDSCQIAPFPEAALPTSHPKIVLTSLPALAVPPPTPTKAAPPALVNGLELSEPRSW
                                     :: .  :    : :  : ::  :... .. 
XP_016 GGSSSSHSRQQSPVNPDPVALDAHREFLHRPASGYVPEEIWKKAEEA-VN--EVKR-QAM
            170       180       190       200        210           

         390       400       410           420       430       440 
pF1KB8 LYLEEMVNSLLNTAQQLKTLFEQAKHASTY----REAATNQAKIHADAERKEQSCVNCGR
         :.. :.     :... :  :.::   :     :.:: .   .  . : . .:: ::::
XP_016 TELQKAVSEAERKAHDMITT-ERAKMERTVAEAKRQAAEDALAVINQQEDSSESCWNCGR
      220       230        240       250       260       270       

             450       460       470       480       490           
pF1KB8 EAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSAAVTVQADEVHVAESVMEKVTV    
       .:   :.::. . ::..:::.:::. :.:::::.  .  :.:   :. ::          
XP_016 KASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAQQQGDTPAVSSSVTPNSGAGSPM
       280       290       300       310       320       330       

XP_016 DTPPAATPRSTTPGTPSTIETTPR
       340       350       360 

>>XP_016869429 (OMIM: 133435) PREDICTED: protein CBFA2T1  (382 aa)
 initn: 283 init1: 261 opt: 265  Z-score: 214.0  bits: 48.7 E(85289): 3.5e-05
Smith-Waterman score: 265; 35.7% identity (58.6% similar) in 140 aa overlap (356-491:214-348)

         330       340       350       360       370       380     
pF1KB8 YPGYQDSCQIAPFPEAALPTSHPKIVLTSLPALAVPPPTPTKAAPPALVNGLELSEPRSW
                                     :: .  :    : :  : ::  :... .. 
XP_016 GGSSSSHSRQQSPVNPDPVALDAHREFLHRPASGYVPEEIWKKAEEA-VN--EVKR-QAM
           190       200       210       220       230             

         390       400       410           420       430       440 
pF1KB8 LYLEEMVNSLLNTAQQLKTLFEQAKHASTY----REAATNQAKIHADAERKEQSCVNCGR
         :.. :.     :... :  :.::   :     :.:: .   .  . : . .:: ::::
XP_016 TELQKAVSEAERKAHDMITT-ERAKMERTVAEAKRQAAEDALAVINQQEDSSESCWNCGR
     240       250        260       270       280       290        

             450       460       470       480       490           
pF1KB8 EAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSAAVTVQADEVHVAESVMEKVTV    
       .:   :.::. . ::..:::.:::. :.:::::.  .  :.:   :. ::          
XP_016 KASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAQQQGDTPAVSSSVTPNSGAGSPM
      300       310       320       330       340       350        

XP_016 DTPPAATPRSTTPGTPSTIETTPR
      360       370       380  

>>XP_016869428 (OMIM: 133435) PREDICTED: protein CBFA2T1  (382 aa)
 initn: 283 init1: 261 opt: 265  Z-score: 214.0  bits: 48.7 E(85289): 3.5e-05
Smith-Waterman score: 265; 35.7% identity (58.6% similar) in 140 aa overlap (356-491:214-348)

         330       340       350       360       370       380     
pF1KB8 YPGYQDSCQIAPFPEAALPTSHPKIVLTSLPALAVPPPTPTKAAPPALVNGLELSEPRSW
                                     :: .  :    : :  : ::  :... .. 
XP_016 GGSSSSHSRQQSPVNPDPVALDAHREFLHRPASGYVPEEIWKKAEEA-VN--EVKR-QAM
           190       200       210       220       230             

         390       400       410           420       430       440 
pF1KB8 LYLEEMVNSLLNTAQQLKTLFEQAKHASTY----REAATNQAKIHADAERKEQSCVNCGR
         :.. :.     :... :  :.::   :     :.:: .   .  . : . .:: ::::
XP_016 TELQKAVSEAERKAHDMITT-ERAKMERTVAEAKRQAAEDALAVINQQEDSSESCWNCGR
     240       250        260       270       280       290        

             450       460       470       480       490           
pF1KB8 EAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSAAVTVQADEVHVAESVMEKVTV    
       .:   :.::. . ::..:::.:::. :.:::::.  .  :.:   :. ::          
XP_016 KASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAQQQGDTPAVSSSVTPNSGAGSPM
      300       310       320       330       340       350        

XP_016 DTPPAATPRSTTPGTPSTIETTPR
      360       370       380  

>>XP_016869426 (OMIM: 133435) PREDICTED: protein CBFA2T1  (567 aa)
 initn: 298 init1: 261 opt: 265  Z-score: 211.5  bits: 48.8 E(85289): 4.8e-05
Smith-Waterman score: 265; 35.7% identity (58.6% similar) in 140 aa overlap (356-491:399-533)

         330       340       350       360       370       380     
pF1KB8 YPGYQDSCQIAPFPEAALPTSHPKIVLTSLPALAVPPPTPTKAAPPALVNGLELSEPRSW
                                     :: .  :    : :  : ::  :... .. 
XP_016 GGSSSSHSRQQSPVNPDPVALDAHREFLHRPASGYVPEEIWKKAEEA-VN--EVKR-QAM
      370       380       390       400       410          420     

         390       400       410           420       430       440 
pF1KB8 LYLEEMVNSLLNTAQQLKTLFEQAKHASTY----REAATNQAKIHADAERKEQSCVNCGR
         :.. :.     :... :  :.::   :     :.:: .   .  . : . .:: ::::
XP_016 TELQKAVSEAERKAHDMITT-ERAKMERTVAEAKRQAAEDALAVINQQEDSSESCWNCGR
          430       440        450       460       470       480   

             450       460       470       480       490           
pF1KB8 EAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSAAVTVQADEVHVAESVMEKVTV    
       .:   :.::. . ::..:::.:::. :.:::::.  .  :.:   :. ::          
XP_016 KASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAQQQGDTPAVSSSVTPNSGAGSPM
           490       500       510       520       530       540   

XP_016 DTPPAATPRSTTPGTPSTIETTPR
           550       560       

>>NP_783553 (OMIM: 133435) protein CBFA2T1 isoform C [Ho  (567 aa)
 initn: 298 init1: 261 opt: 265  Z-score: 211.5  bits: 48.8 E(85289): 4.8e-05
Smith-Waterman score: 265; 35.7% identity (58.6% similar) in 140 aa overlap (356-491:399-533)

         330       340       350       360       370       380     
pF1KB8 YPGYQDSCQIAPFPEAALPTSHPKIVLTSLPALAVPPPTPTKAAPPALVNGLELSEPRSW
                                     :: .  :    : :  : ::  :... .. 
NP_783 GGSSSSHSRQQSPVNPDPVALDAHREFLHRPASGYVPEEIWKKAEEA-VN--EVKR-QAM
      370       380       390       400       410          420     

         390       400       410           420       430       440 
pF1KB8 LYLEEMVNSLLNTAQQLKTLFEQAKHASTY----REAATNQAKIHADAERKEQSCVNCGR
         :.. :.     :... :  :.::   :     :.:: .   .  . : . .:: ::::
NP_783 TELQKAVSEAERKAHDMITT-ERAKMERTVAEAKRQAAEDALAVINQQEDSSESCWNCGR
          430       440        450       460       470       480   

             450       460       470       480       490           
pF1KB8 EAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSAAVTVQADEVHVAESVMEKVTV    
       .:   :.::. . ::..:::.:::. :.:::::.  .  :.:   :. ::          
NP_783 KASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAQQQGDTPAVSSSVTPNSGAGSPM
           490       500       510       520       530       540   

NP_783 DTPPAATPRSTTPGTPSTIETTPR
           550       560       

>>XP_016869424 (OMIM: 133435) PREDICTED: protein CBFA2T1  (567 aa)
 initn: 298 init1: 261 opt: 265  Z-score: 211.5  bits: 48.8 E(85289): 4.8e-05
Smith-Waterman score: 265; 35.7% identity (58.6% similar) in 140 aa overlap (356-491:399-533)

         330       340       350       360       370       380     
pF1KB8 YPGYQDSCQIAPFPEAALPTSHPKIVLTSLPALAVPPPTPTKAAPPALVNGLELSEPRSW
                                     :: .  :    : :  : ::  :... .. 
XP_016 GGSSSSHSRQQSPVNPDPVALDAHREFLHRPASGYVPEEIWKKAEEA-VN--EVKR-QAM
      370       380       390       400       410          420     

         390       400       410           420       430       440 
pF1KB8 LYLEEMVNSLLNTAQQLKTLFEQAKHASTY----REAATNQAKIHADAERKEQSCVNCGR
         :.. :.     :... :  :.::   :     :.:: .   .  . : . .:: ::::
XP_016 TELQKAVSEAERKAHDMITT-ERAKMERTVAEAKRQAAEDALAVINQQEDSSESCWNCGR
          430       440        450       460       470       480   

             450       460       470       480       490           
pF1KB8 EAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSAAVTVQADEVHVAESVMEKVTV    
       .:   :.::. . ::..:::.:::. :.:::::.  .  :.:   :. ::          
XP_016 KASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAQQQGDTPAVSSSVTPNSGAGSPM
           490       500       510       520       530       540   

XP_016 DTPPAATPRSTTPGTPSTIETTPR
           550       560       

>>XP_016869425 (OMIM: 133435) PREDICTED: protein CBFA2T1  (567 aa)
 initn: 298 init1: 261 opt: 265  Z-score: 211.5  bits: 48.8 E(85289): 4.8e-05
Smith-Waterman score: 265; 35.7% identity (58.6% similar) in 140 aa overlap (356-491:399-533)

         330       340       350       360       370       380     
pF1KB8 YPGYQDSCQIAPFPEAALPTSHPKIVLTSLPALAVPPPTPTKAAPPALVNGLELSEPRSW
                                     :: .  :    : :  : ::  :... .. 
XP_016 GGSSSSHSRQQSPVNPDPVALDAHREFLHRPASGYVPEEIWKKAEEA-VN--EVKR-QAM
      370       380       390       400       410          420     

         390       400       410           420       430       440 
pF1KB8 LYLEEMVNSLLNTAQQLKTLFEQAKHASTY----REAATNQAKIHADAERKEQSCVNCGR
         :.. :.     :... :  :.::   :     :.:: .   .  . : . .:: ::::
XP_016 TELQKAVSEAERKAHDMITT-ERAKMERTVAEAKRQAAEDALAVINQQEDSSESCWNCGR
          430       440        450       460       470       480   

             450       460       470       480       490           
pF1KB8 EAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSAAVTVQADEVHVAESVMEKVTV    
       .:   :.::. . ::..:::.:::. :.:::::.  .  :.:   :. ::          
XP_016 KASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAQQQGDTPAVSSSVTPNSGAGSPM
           490       500       510       520       530       540   

XP_016 DTPPAATPRSTTPGTPSTIETTPR
           550       560       




497 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:12:15 2016 done: Sat Nov  5 02:12:17 2016
 Total Scan time: 11.630 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]
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