Result of FASTA (ccds) for pF1KF0137
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KF0137, 1508 aa
  1>>>pF1KF0137 1508 - 1508 aa - 1508 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1717+/-0.00105; mu= 14.8647+/- 0.062
 mean_var=148.4281+/-31.093, 0's: 0 Z-trim(108.3): 87  B-trim: 0 in 0/50
 Lambda= 0.105273
 statistics sampled from 10026 (10104) to 10026 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.31), width:  16
 Scan time:  4.690

The best scores are:                                      opt bits E(32554)
CCDS4330.1 GEMIN5 gene_id:25929|Hs108|chr5         (1508) 10267 1572.7       0


>>CCDS4330.1 GEMIN5 gene_id:25929|Hs108|chr5              (1508 aa)
 initn: 10267 init1: 10267 opt: 10267  Z-score: 8431.1  bits: 1572.7 E(32554):    0
Smith-Waterman score: 10267; 99.9% identity (100.0% similar) in 1508 aa overlap (1-1508:1-1508)

               10        20        30        40        50        60
pF1KF0 MGQEPRTLPPSPNWYCARCSDAVPGGLFGFAARTSVFLVRVGPGAGESPGTPPFRVIGEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MGQEPRTLPPSPNWYCARCSDAVPGGLFGFAARTSVFLVRVGPGAGESPGTPPFRVIGEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KF0 VGHTERVSGFTFSHHPGQYNLCATSSDDGTVKIWDVETKTVVTEHALHQHTISTLHWSPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VGHTERVSGFTFSHHPGQYNLCATSSDDGTVKIWDVETKTVVTEHALHQHTISTLHWSPR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KF0 VKDLIVSGDEKGVVFCYWFNRNDSQHLFIEPRTIFCLTCSPHHEDLVAIGYKDGIVVIID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VKDLIVSGDEKGVVFCYWFNRNDSQHLFIEPRTIFCLTCSPHHEDLVAIGYKDGIVVIID
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KF0 ISKKGEVIHRLRGHDDEIHSIAWCPLPGEDCLSINQEETSEEAEITNGNAVAQAPVTKGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ISKKGEVIHRLRGHDDEIHSIAWCPLPGEDCLSINQEETSEEAEITNGNAVAQAPVTKGC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KF0 YLATGSKDQTIRIWSCSRGRGVMILKLPFLKRRGGGIDPTVKERLWLTLHWPSNQPTQLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YLATGSKDQTIRIWSCSRGRGVMILKLPFLKRRGGGIDPTVKERLWLTLHWPSNQPTQLV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KF0 SSCFGGELLQWDLTQSWRRKYTLFSASSEGQNHSRIVFNLCPLQTEDDKQLLLSTSMDRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SSCFGGELLQWDLTQSWRRKYTLFSASSEGQNHSRIVFNLCPLQTEDDKQLLLSTSMDRD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KF0 VKCWDIATLECSWTLPSLGGFAYSLAFSSVDIGSLAIGVGDGMIRVWNTLSIKNNYDVKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VKCWDIATLECSWTLPSLGGFAYSLAFSSVDIGSLAIGVGDGMIRVWNTLSIKNNYDVKN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KF0 FWQGVKSKVTALCWHPTKEGCLAFGTDDGKVGLYDTYSNKPPQISSTYHKKTVYTLAWGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FWQGVKSKVTALCWHPTKEGCLAFGTDDGKVGLYDTYSNKPPQISSTYHKKTVYTLAWGP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KF0 PVPPMSLGGEGDRPSLALYSCGGEGIVLQHNPWKLSGEAFDINKLIRDTNSIKYKLPVHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PVPPMSLGGEGDRPSLALYSCGGEGIVLQHNPWKLSGEAFDINKLIRDTNSIKYKLPVHT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KF0 EISWKADGKIMALGNEDGSIEIFQIPNLKLICTIQQHHKLVNTISWHHEHGSQPELSYLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EISWKADGKIMALGNEDGSIEIFQIPNLKLICTIQQHHKLVNTISWHHEHGSQPELSYLM
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KF0 ASGSNNAVIYVHNLKTVIESSPESPVTITEPYRTLSGHTAKITSVAWSPHHDGRLVSASY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ASGSNNAVIYVHNLKTVIESSPESPVTITEPYRTLSGHTAKITSVAWSPHHDGRLVSASY
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KF0 DGTAQVWDALREEPLCNFRGHQGRLLCVAWSPLDPDCIYSGADDFCVHKWLTSMQDHSRP
       :::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
CCDS43 DGTAQVWDALREEPLCNFRGHRGRLLCVAWSPLDPDCIYSGADDFCVHKWLTSMQDHSRP
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KF0 PQGKKSIELEKKRLSQPKAKPKKKKKPTLRTPVKLESIDGNEEESMKENSGPVENGVSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PQGKKSIELEKKRLSQPKAKPKKKKKPTLRTPVKLESIDGNEEESMKENSGPVENGVSDQ
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KF0 EGEEQAREPELPCGLAPAVSREPVICTPVSSGFEKSKVTINNKVILLKKEPPKEKPETLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EGEEQAREPELPCGLAPAVSREPVICTPVSSGFEKSKVTINNKVILLKKEPPKEKPETLI
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KF0 KKRKARSLLPLSTSLDHRSKEELHQDCLVLATAKHSRELNEDVSADVEERFHLGLFTDRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KKRKARSLLPLSTSLDHRSKEELHQDCLVLATAKHSRELNEDVSADVEERFHLGLFTDRA
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KF0 TLYRMIDIEGKGHLENGHPELFHQLMLWKGDLKGVLQTAAERGELTDNLVAMAPAAGYHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TLYRMIDIEGKGHLENGHPELFHQLMLWKGDLKGVLQTAAERGELTDNLVAMAPAAGYHV
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KF0 WLWAVEAFAKQLCFQDQYVKAASHLLSIHKVYEAVELLKSNHFYREAIAIAKARLRPEDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 WLWAVEAFAKQLCFQDQYVKAASHLLSIHKVYEAVELLKSNHFYREAIAIAKARLRPEDP
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KF0 VLKDLYLSWGTVLERDGHYAVAAKCYLGATCAYDAAKVLAKKGDAASLRTAAELAAIVGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VLKDLYLSWGTVLERDGHYAVAAKCYLGATCAYDAAKVLAKKGDAASLRTAAELAAIVGE
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KF0 DELSASLALRCAQELLLANNWVGAQEALQLHESLQGQRLVFCLLELLSRHLEEKQLSEGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DELSASLALRCAQELLLANNWVGAQEALQLHESLQGQRLVFCLLELLSRHLEEKQLSEGK
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KF0 SSSSYHTWNTGTEGPFVERVTAVWKSIFSLDTPEQYQEAFQKLQNIKYPSATNNTPAKQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SSSSYHTWNTGTEGPFVERVTAVWKSIFSLDTPEQYQEAFQKLQNIKYPSATNNTPAKQL
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KF0 LLHICHDLTLAVLSQQMASWDEAVQALLRAVVRSYDSGSFTIMQEVYSAFLPDGCDHLRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LLHICHDLTLAVLSQQMASWDEAVQALLRAVVRSYDSGSFTIMQEVYSAFLPDGCDHLRD
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KF0 KLGDHQSPATPAFKSLEAFFLYGRLYEFWWSLSRPCPNSSVWVRAGHRTLSVEPSQQLDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KLGDHQSPATPAFKSLEAFFLYGRLYEFWWSLSRPCPNSSVWVRAGHRTLSVEPSQQLDT
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KF0 ASTEETDPETSQPEPNRPSELDLRLTEEGERMLSTFKELFSEKHASLQNSQRTVAEVQET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ASTEETDPETSQPEPNRPSELDLRLTEEGERMLSTFKELFSEKHASLQNSQRTVAEVQET
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420      1430      1440
pF1KF0 LAEMIRQHQKSQLCKSTANGPDKNEPEVEAEQPLCSSQSQCKEEKNEPLSLPELTKRLTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LAEMIRQHQKSQLCKSTANGPDKNEPEVEAEQPLCSSQSQCKEEKNEPLSLPELTKRLTE
             1390      1400      1410      1420      1430      1440

             1450      1460      1470      1480      1490      1500
pF1KF0 ANQRMAKFPESIKAWPFPDVLECCLVLLLIRSHFPGCLAQEMQQQAQELLQKYGNTKTYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ANQRMAKFPESIKAWPFPDVLECCLVLLLIRSHFPGCLAQEMQQQAQELLQKYGNTKTYR
             1450      1460      1470      1480      1490      1500

               
pF1KF0 RHCQTFCM
       ::::::::
CCDS43 RHCQTFCM
               




1508 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:25:58 2016 done: Thu Nov  3 18:25:59 2016
 Total Scan time:  4.690 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com