Result of GENSCAN for pF1KB6835
GENSCAN 1.0	Date run:  5-Nov-116	Time: 20:11:02

Sequence gi568815586f:85774404_85982372 : 207969 bp : 35.11% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Sngl +  12039  12257  219  2  0   88   42   285 0.970  18.81
 1.02 PlyA +  12916  12921    6                               1.05

 2.00 Prom +  13451  13490   40                              -6.15
 2.01 Init +  14400  14563  164  2  2   70   72    67 0.366   2.55
 2.02 Term +  15260  15779  520  2  1   30   38   263 0.433   8.28
 2.03 PlyA +  15912  15917    6                               1.05

 3.02 PlyA -  17918  17913    6                               1.05
 3.01 Sngl -  31543  30299 1245  1  0   75   32  1105 0.948  99.17
 3.00 Prom -  33619  33580   40                              -5.95

 4.02 PlyA -  33756  33751    6                               1.05
 4.01 Sngl -  49073  48819  255  2  0   36   42   227 0.951   7.76
 4.00 Prom -  50138  50099   40                              -7.55

 5.00 Prom +  51925  51964   40                              -2.15
 5.01 Init +  56641  56724   84  0  0   65   82   -24 0.184  -4.43
 5.02 Term +  62516  62785  270  1  0   44   45   249 0.733  10.70
 5.03 PlyA +  63376  63381    6                               1.05

 6.00 Prom +  63691  63730   40                              -5.45
 6.01 Init +  67390  67505  116  0  2   36   78    70 0.443   0.53
 6.02 Intr +  69750  70042  293  0  2   79   80   127 0.367   6.85
 6.03 Term +  70388  70626  239  0  2   62   42   121 0.413   0.25
 6.04 PlyA +  71481  71486    6                               1.05

 7.05 PlyA -  73480  73475    6                               1.05
 7.04 Term -  78313  78224   90  1  0  124   38    78 0.523   3.14
 7.03 Intr -  81046  80884  163  0  1   77   64    43 0.425  -0.14
 7.02 Intr -  81871  81375  497  1  2   71   31   264 0.201   9.86
 7.01 Init -  82963  82817  147  1  0   96   46   105 0.406   6.19
 7.00 Prom -  83836  83797   40                              -5.75

 8.00 Prom +  85755  85794   40                              -4.55
 8.01 Init +  91983  92044   62  2  2   62   80    85 0.019   3.87
 8.02 Intr +  99664  99795  132  1  0   48   57    96 0.012   1.34
 8.03 Intr + 103995 104166  172  0  1   31   65   111 0.170   2.12
 8.04 Term + 107820 107972  153  2  0   90   54   137 0.998   7.44
 8.05 PlyA + 107976 107981    6                               1.05

 9.02 PlyA - 107990 107985    6                               1.05
 9.01 Sngl - 119997 119689  309  0  0   91   50   188 0.916  10.95
 9.00 Prom - 122124 122085   40                              -2.95

10.00 Prom + 129927 129966   40                              -4.15
10.01 Init + 134484 134608  125  2  2   71  115   117 0.892  12.39
10.02 Intr + 138604 138792  189  1  0   76   80    74 0.714   3.18
10.03 Intr + 163762 163834   73  1  1   51  108    40 0.780   0.79
10.04 Term + 163906 164103  198  0  0  122   48   175 0.908  13.32
10.05 PlyA + 165836 165841    6                               1.05

11.03 PlyA - 166909 166904    6                               1.05
11.02 Term - 173164 173070   95  2  2   86   44    59 0.244  -1.69
11.01 Init - 176497 176410   88  1  1   48   72   106 0.591   5.85
11.00 Prom - 179119 179080   40                              -3.95

12.03 PlyA - 179260 179255    6                               1.05
12.02 Term - 203155 203094   62  2  2   85   54    63 0.603  -0.41
12.01 Intr - 206027 204993 1035  0  0   78   44   545 0.523  38.66

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586f:85774404_85982372|GENSCAN_predicted_peptide_1|72_aa
MGKKQSRKTENSKNQSASPPPKERSFSPTMEQSCKENDFDKLREEGFRQSNFSELKEEVR
THRKEAKNHEKD

>gi568815586f:85774404_85982372|GENSCAN_predicted_CDS_1|219_bp
atggggaaaaaacagagcagaaaaactgaaaattctaaaaatcagagtgcctctccccct
ccaaaggaacgaagcttctcgccaacaatggaacaaagctgtaaggagaatgactttgac
aagttgagagaagaaggcttcagacaatcaaacttctccgagctaaaggaggaagttcga
acacatcgcaaagaagctaaaaaccatgaaaaagattag

>gi568815586f:85774404_85982372|GENSCAN_predicted_peptide_2|227_aa
MDKFLDTYTLPRLNQEEVESLNRQITGSEIEAIINSLQTKKSPGPDGFTAEFYQSPKSPK
LISNFSKVSGYKINVQKSQAFLYTNNRLTESQTMSELPFTIVSKRIKYLGIQLKKDVKDL
LKENYKTLLNEIKEDTNKWKNIPCSWVGRINVVKMAILPKLIYRFNAIPIKLPMTFFTEL
EKTTLKFIWNQKRACIAKSILSQKNKAGGITLPDFKLHYKATVSKTA

>gi568815586f:85774404_85982372|GENSCAN_predicted_CDS_2|684_bp
atggataaattcctggacacatacactctcccaagactaaaccaggaagaagttgaatct
ctgaatagacaaataacaggctctgaaattgaggcaataattaatagcttacaaaccaaa
aaaagtccaggaccggacggattcacagccgagttctaccagagcccaaaatctcctaag
ctgataagcaacttcagcaaagtctcaggatacaaaatcaatgtgcaaaaatcacaagca
ttcttatacaccaataacagactaacagagagccaaaccatgagtgaactcccgttcaca
attgtttcaaagagaataaaatacctaggaatccaacttaaaaaggatgtgaaggacctc
cttaaggagaactacaaaacactgctcaacgaaataaaagaagacacaaacaaatggaag
aatattccatgctcatgggtaggaagaatcaatgtcgtgaaaatggccatactgcccaaa
ttaatttatagattcaatgccatccccatcaagctaccaatgactttcttcacagaattg
gaaaaaactactttaaagttcatatggaaccaaaaaagagcctgcattgccaagtcaatc
ctaagccaaaagaacaaagctggaggcatcacgctacctgacttcaaactacactacaag
gctacagtatccaaaacagcatag

>gi568815586f:85774404_85982372|GENSCAN_predicted_peptide_3|414_aa
MDSEEKEIVVWVCQEEKLVCGLTKRTTSADVIQALLEEHEATFGEKRFLLGKPSDYCIIE
KWRGSERVLPPLTRILKLWKAWGDEQPNMQFVLVKADAFLPVPLWRTAEAKLVQNTEKLW
ELSPANYMKTLPPDKQKRIVRKTFRKLAKIKQDTVSHDRDNMETLVHLIISQDHTIHQQV
KRMKELDLEIEKCEAKFHLDRVENDGENYVQDAYLMPSFSEVEQNLDLQYEENQTLEDLS
ESDGIEQLEERLKYYRILIDKLSAEIEKEVKSVCIDINEDAEGEAASELESSNLESVKCD
LEKSMKAGLKIHSHLSGIQKEIKYSDSLLQMKAKEYELLAKEFNSLHISNKDGCQLKENR
AKESEVPSSNGEIPPFTQRVFSNYTNDTDSDTGISSNHSQDSETTVGDVVLLST

>gi568815586f:85774404_85982372|GENSCAN_predicted_CDS_3|1245_bp
atggattcagaagagaaggaaattgtggtttgggtttgccaagaagagaagcttgtctgt
gggctgactaaacgcaccacctctgctgatgtcatccaggctttgcttgaggaacatgag
gctacgtttggagagaaacgatttcttctggggaagcccagtgattactgcatcatagag
aagtggagaggctccgaaagggttcttcctccactaactagaatcctgaagctttggaaa
gcgtggggagatgagcagcccaatatgcaatttgttttggttaaagcagatgcttttctt
ccagttcctttgtggcggacagctgaagccaaattagtgcaaaacacagaaaaattgtgg
gagctcagcccagcaaactacatgaagactttaccaccagataaacaaaaaagaatagtc
aggaaaactttccggaaactggctaaaattaagcaggacacagtttctcatgatcgagat
aatatggagacattagttcatctgatcatttcccaggaccatactattcatcagcaagtc
aagagaatgaaagagctggatctggaaattgaaaagtgtgaagctaagttccatcttgat
cgagtagaaaatgatggagaaaactatgttcaggatgcatatttaatgcccagtttcagt
gaagttgagcaaaatctagacttgcagtatgaggaaaaccagactctggaggacctgagc
gaaagtgatggaattgaacagctggaagaacgactgaaatattaccgaatactcattgat
aagctctctgctgaaatagaaaaagaggtaaaaagtgtttgcattgatataaatgaagat
gcggaaggggaagctgcaagtgaactggaaagctctaatttagagagtgttaagtgtgat
ttggagaaaagcatgaaagctggtttgaaaattcactctcatttgagtggcatccagaaa
gagattaaatacagtgactcattgcttcagatgaaagcaaaagaatatgaactcctggcc
aaggaattcaattcacttcacattagcaacaaagatgggtgccagttaaaggaaaacaga
gcgaaggaatctgaggttcccagtagcaatggggagattcctccctttactcaaagagta
tttagcaattacacaaatgacacagactcggacactggtatcagttctaaccacagtcag
gactccgaaacaacagtaggagatgtggtgctgttgtcaacatag

>gi568815586f:85774404_85982372|GENSCAN_predicted_peptide_4|84_aa
MWKKQGACGIWEEAAGKAKEDPCENGIVTVKERKAARMGGGGHNALCYKEDMSDQFCKWL
LGVAVKRFLITLRRKVATEDEWRQ

>gi568815586f:85774404_85982372|GENSCAN_predicted_CDS_4|255_bp
atgtggaagaagcaaggtgcatgtgggatctgggaagaagcagctggaaaagcaaaggaa
gatccatgtgagaatggcatcgtaacagtcaaggagaggaaagctgcaagaatgggagga
ggaggtcacaatgcattatgttacaaagaggatatgtcagatcagttctgcaagtggcta
ttgggtgtggcagttaagagatttctgataaccctaagaagaaaagtggctactgaggat
gagtggaggcagtag

>gi568815586f:85774404_85982372|GENSCAN_predicted_peptide_5|117_aa
MRFHFRKLICKRQRDSLSRTGIHIHLQEAPAPHSQVHLAKVEGPEGPQGSRADASQFGLG
TSWSLVFDSQGVYVDPYPIFDIHWAFRALGISEEKQTAPAPQGVKKTHRGDLLELEM

>gi568815586f:85774404_85982372|GENSCAN_predicted_CDS_5|354_bp
atgaggtttcattttagaaagctgatatgtaagaggcaaagagattccttgtcaaggact
ggtattcatatacacctgcaagaggcccctgctccacactctcaagttcatcttgcaaaa
gtcgaaggacctgaaggaccacagggctccagggctgatgcatcacagtttggtctagga
accagctggagtttagtgtttgactcccaaggcgtttatgttgacccctaccccatcttt
gacattcactgggcctttagagccctgggaatttcagaggaaaagcaaactgctcctgcc
cctcaaggagtaaagaagacacaccgaggggatctgctggagctcgaaatgtga

>gi568815586f:85774404_85982372|GENSCAN_predicted_peptide_6|215_aa
MYLSSAVRSCLKFAHGNRKLSLKIGMDEASLTKPFKYGCPLWTLGSDKHKREAKWGLREA
RHWLAWTFFMNSLGTIESSRRQTGSKEERDGSLVKPHLPAGESLKPGGQAPVSWTTEGTC
GVFSCARPWQPMDQSADEGERRTMALRGPQTWEAPRARAVTLSLGPCRSWSLQASRHHHI
PQCQPWKLLAVYLVQPQPLSELVPMPAPGAAHPLQ

>gi568815586f:85774404_85982372|GENSCAN_predicted_CDS_6|648_bp
atgtacctatcttcagcagttcgttcctgtcttaaatttgctcatggtaataggaaactg
tctctaaaaattggaatggatgaggcttctctcacaaagccttttaaatatggatgcccc
ctctggactttgggctctgataagcacaagagggaggccaagtggggactgagggaagct
cggcactggcttgcctggaccttcttcatgaacagcctgggcaccatagaaagcagtaga
aggcagacaggctccaaggaagaaagggatgggtcccttgtgaagccccaccttccggct
ggggaaagcctaaagcctgggggccaggcgccagtctcctggaccacagagggaacttgt
ggtgttttttcctgtgcccgcccatggcagcccatggaccaatcagcagatgaaggggag
agaagaactatggcccttcggggaccccagacctgggaagctccccgagccagggctgtt
actctctctttggggccctgcaggtcctggagtctccaagcttctcggcaccaccacatt
ccccagtgtcagccatggaagctgcttgcagtgtacctggtccagccacagcctctcagt
gagctggtgcccatgccagcacctggagctgcccatccactgcagtag

>gi568815586f:85774404_85982372|GENSCAN_predicted_peptide_7|298_aa
MGFLYVVQAGLELLDSSNPPASASQNSEIDGGGGPSEAAAVGTSAAARELPTYLILSGCR
TSTQDPLNGRTERAVTQTGLKHPPAHNFVGDKKERRGKERKAAVVLVYFHTADKDIPETG
KKKRFNGLTVAHRWGGLTIMVEGKEELVTSYMDGSGQRQRARAGKLPFLKPSHHVRLIHC
HKNSAEMTCPHDSIISHWVPPTTHENYKSYKIRFGHGMWTGSMSRIQAARPCGQNKLSGR
KKNSGKSATGHRSFKLEKQHPNHPMTALQPTQHKDDEDEDVYDDHFYLIKNNYIFYSV

>gi568815586f:85774404_85982372|GENSCAN_predicted_CDS_7|897_bp
atggggtttctctatgttgtccaggctggtctcgaactcctcgattcaagcaatccacct
gcctcagcttcccaaaattctgagattgatggtggtggtggcccatctgaagcagctgct
gtgggaacatcagctgcagcaagggagttgcccacatacctcattctttctggatgcagg
acaagtactcaggacccattgaatggcagaactgaaagagctgtcacacaaacaggactg
aaacacccccctgctcataactttgtgggtgacaagaaggagagaagagggaaagagaga
aaagctgcagttgtcttagtttatttccacactgctgataaagacatacctgagactggg
aagaaaaagaggtttaatggacttacagttgcacatcgctggggaggcctcacaatcatg
gtggaaggaaaggaggagctagtcacatcttacatggatggcagtgggcaaagacagaga
gctcgtgcagggaaactcccgtttttaaaaccatcacatcacgtcagacttattcactgt
cacaagaacagcgcagaaatgacctgcccccatgattcaatcatctcccactgggtccct
cccacaacacatgaaaattataagagctacaagataagatttgggcatgggatgtggact
ggtagcatgagccgaatacaggctgccaggccgtgtgggcagaacaagctcagtgggcgc
aagaaaaactcaggcaaaagtgccaccggccacagaagtttcaagctggaaaagcaacac
cctaaccatcctatgacagcattacagcctactcaacataaagatgatgaggatgaagat
gtttatgatgatcacttctacttaataaagaataactatattttttattctgtgtga

>gi568815586f:85774404_85982372|GENSCAN_predicted_peptide_8|172_aa
MLTHRLPWLGVGGPLPHVALRNPKQQQQQLGKIVTFTQGSEMGEESRGDKGKGEEKAGQR
GEGWSLVNNLNSPAEETGEVHEEELVARRKLPTALDGFSLEAMLTIYQLHKICHSRAFQH
WELIQEDILDTGNDKNGKEEVIKRKIPYILKRQLYENKPRRPYILKRDSYYY

>gi568815586f:85774404_85982372|GENSCAN_predicted_CDS_8|519_bp
atgctcactcaccgcctcccttggctgggggtagggggtcccctgccccatgtggctctc
agaaatccaaagcagcagcagcagcaattagggaagatcgtcactttcactcaaggttca
gaaatgggggaggagagcaggggggacaaaggaaaaggggaggagaaagcagggcaaaga
ggggagggatggagtcttgtaaataatttgaacagcccagctgaggaaacaggagaagtt
catgaagaggagcttgttgcaagaaggaaacttcctactgctttagatggctttagcttg
gaagcaatgttgacaatataccagctccacaaaatctgtcacagcagggcttttcaacac
tgggagttaatccaggaagatattcttgatactggaaatgacaaaaatggaaaggaagaa
gtcataaagagaaaaattccttatattctgaaacggcagctgtatgagaataaacccaga
agaccctacatactcaaaagagattcttactattactga

>gi568815586f:85774404_85982372|GENSCAN_predicted_peptide_9|102_aa
MDKWDHIKLKNFYIAKKTINKVKRQFTGEKIFAHYPSEIGLITTICKELKQLYTRKKSNN
LIKRWTIDLNAHFSKEDIQMASRYMKRCSTSLIIREMQIKLQ

>gi568815586f:85774404_85982372|GENSCAN_predicted_CDS_9|309_bp
atggacaaatgggatcacatcaagttaaaaaacttctacatagcaaagaagacaatcaac
aaagtgaagagacaattcacaggagagaaaatatttgcacattacccatctgaaatcgga
ttaattaccacaatatgtaaggagctcaagcaactctatacgagaaaaaaatctaataat
ttgattaaaagatggacaatagatctgaatgcacatttctcaaaagaagacatacaaatg
gcaagcaggtatatgaaaaggtgctcaacatcattgatcatcagagaaatgcaaatcaaa
ctacaatga

>gi568815586f:85774404_85982372|GENSCAN_predicted_peptide_10|194_aa
MGKNFMTKTQKAIATKAKIDKWDLIKRKSFCTAKEAIIRENSLHVLCFFFFFEGIAENFL
NLEKDINIQVQEEYRTPNRFNPNKTKSRHLIIKLPKNKDKEKMASHKLVHAQQHFFINVM
GLRQVLKAQPAPMAPWGVPYDQLTEEEKTRAWFTDDSAQYAGITRKWIAAALQPLSRTSL
KDSSEGKSSQWTEL

>gi568815586f:85774404_85982372|GENSCAN_predicted_CDS_10|585_bp
atgggcaagaacttcatgactaaaacacaaaaagcaattgcaacaaaagccaaaattgac
aaatgggatctaattaaacgaaagagcttctgcacagcaaaagaagctatcatcagggag
aacagtttacatgtcctttgtttctttttcttttttgaagggatagcagagaacttctta
aacctagagaaagacataaatatccaagtacaagaagaatatagaacaccaaacagattt
aacccaaataagactaaatcaagacatttaataatcaaactccccaagaacaaggataaa
gaaaagatggccagccacaaattggttcatgcacagcagcatttcttcatcaatgtaatg
gggctcaggcaggttctgaaggcacaacctgcaccaatggccccatggggagttccctat
gatcagttgacagaggaagagaagactagggcctggttcacagatgattctgcacaatat
gcaggcatcacccgaaagtggatagctgcagcactgcagcccctttctaggacatctctg
aaggacagcagtgaagggaaatcttcccagtggacagaactttga

>gi568815586f:85774404_85982372|GENSCAN_predicted_peptide_11|60_aa
MKERYKENYKTLVKEIIDETNKWENIPSSGIPTCGEHHGDLHLRIKRLRWVGQLFHWLRE

>gi568815586f:85774404_85982372|GENSCAN_predicted_CDS_11|183_bp
atgaaagaacgctacaaggagaactacaaaacactagtgaaagaaatcatcgatgaaaca
aacaaatgggaaaacattccaagctcaggtatccccacgtgtggagaacatcatggcgac
ctgcatttgcgtattaaaagactgcggtgggtgggccagctttttcactggctacgtgaa
tga

>gi568815586f:85774404_85982372|GENSCAN_predicted_peptide_12|365_aa
XYLTIGLSSVKRKKGNYLLETIKSIFEQSSYEELKEISVVVHLADFNSSWRDAMVQDITQ
KFAHHIIAGRLMVIHAPEEYYPILDGLKRNYNDPEDRVKFRSKQNVDYAFLLNFCANTSD
YYVMLEDDVRCSKNFLTAIKKVIASLEGTYWVTLEFSKLGYIGKLYHSHDLPRLAHFLLM
FYQEMPCDWLLTHFRGLLAQKNVIRFKPSLFQHMGYYSSYKGTENKLKDDDFEEESFDIP
DNPPASLYTNMNVFENYEASKAYSSVDEYFWGKPPSTGDVFVIVFENPIIIKKIKVNTGT
EDRQNDILHHGALDVGENVMPSKQRRQCSTYLRLGEFKNGNFEMSATKVLEEKRTFHKRL
NINIL

>gi568815586f:85774404_85982372|GENSCAN_predicted_CDS_12|1098_bp
nggtatcttacaattggactttcttcagtaaagcgaaaaaaaggaaactatttacttgag
acaattaagtcaatttttgagcaatccagctatgaagagctgaaggaaatttcagtggtg
gttcacctagcagactttaattcttcctggcgtgatgccatggtccaggatattacacag
aaatttgcgcaccatattattgcaggaagattaatggttatacatgctccagaggagtat
tacccaatcctagatggccttaaaagaaattacaatgatccagaagatagagtcaaattt
cgttccaagcaaaatgtagattatgcttttctgcttaatttttgtgccaatacttcagac
tattatgtaatgcttgaagatgatgttcgatgttcaaaaaatttcttaactgccatcaag
aaagtcattgcatccctagaaggaacttactgggtaactcttgaattctctaagcttggc
tacattggtaaactctatcattctcatgatctcccacgtttggcccattttttattaatg
ttttatcaagaaatgccttgtgattggctattgactcatttccgtggtctgttggctcag
aaaaatgtgatccgttttaaaccatctctctttcagcacatgggctattattcatcatac
aaagggacggagaataagctgaaggatgatgattttgaagaggagtcatttgacattcct
gataacccccctgcaagtctgtacaccaacatgaatgtgtttgaaaattatgaagcaagc
aaggcttacagtagtgttgatgagtacttttgggggaaaccaccttcaacaggagatgtt
tttgtgattgtatttgaaaatccaattataataaaaaaaattaaagtaaatactggaaca
gaagatcggcaaaatgatattttgcatcatggagccctagatgttggggaaaacgttatg
cctagcaaacaaaggagacaatgttctacttacttaagactaggagaattcaaaaatgga
aactttgaaatgtcagctactaaagtgttagaagaaaaacgaacctttcataagaggcta
aatattaatattttgtga
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com