Result of FASTA (omim) for pF1KE0127
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0127, 376 aa
  1>>>pF1KE0127 376 - 376 aa - 376 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3865+/-0.000392; mu= 15.8393+/- 0.024
 mean_var=62.1631+/-12.012, 0's: 0 Z-trim(111.6): 26  B-trim: 31 in 1/55
 Lambda= 0.162670
 statistics sampled from 20257 (20270) to 20257 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.238), width:  16
 Scan time:  7.830

The best scores are:                                      opt bits E(85289)
NP_001171726 (OMIM: 300777,300872) trimethyllysine ( 376) 2607 620.6 1.8e-177
NP_060666 (OMIM: 300777,300872) trimethyllysine di ( 421) 2315 552.1 8.5e-157
XP_011529484 (OMIM: 300777,300872) PREDICTED: trim ( 370) 1881 450.2 3.5e-126
XP_016885109 (OMIM: 300777,300872) PREDICTED: trim ( 259) 1771 424.4 1.5e-118
XP_016873892 (OMIM: 603312) PREDICTED: gamma-butyr ( 387)  431 110.0 9.9e-24
XP_005253217 (OMIM: 603312) PREDICTED: gamma-butyr ( 387)  431 110.0 9.9e-24
XP_011518704 (OMIM: 603312) PREDICTED: gamma-butyr ( 387)  431 110.0 9.9e-24
XP_005253218 (OMIM: 603312) PREDICTED: gamma-butyr ( 387)  431 110.0 9.9e-24
NP_003977 (OMIM: 603312) gamma-butyrobetaine dioxy ( 387)  431 110.0 9.9e-24
XP_005253216 (OMIM: 603312) PREDICTED: gamma-butyr ( 387)  431 110.0 9.9e-24


>>NP_001171726 (OMIM: 300777,300872) trimethyllysine dio  (376 aa)
 initn: 2607 init1: 2607 opt: 2607  Z-score: 3307.2  bits: 620.6 E(85289): 1.8e-177
Smith-Waterman score: 2607; 100.0% identity (100.0% similar) in 376 aa overlap (1-376:1-376)

               10        20        30        40        50        60
pF1KE0 MWYHRLSHLHSRLQDLLKGGVIYPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MWYHRLSHLHSRLQDLLKGGVIYPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 RHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 YIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQNTVNRQWNSSLQCDIPERILTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQNTVNRQWNSSLQCDIPERILTY
              310       320       330       340       350       360

              370      
pF1KE0 RHFVSGTSIEHRGSLI
       ::::::::::::::::
NP_001 RHFVSGTSIEHRGSLI
              370      

>>NP_060666 (OMIM: 300777,300872) trimethyllysine dioxyg  (421 aa)
 initn: 2311 init1: 2311 opt: 2315  Z-score: 2936.0  bits: 552.1 E(85289): 8.5e-157
Smith-Waterman score: 2315; 93.9% identity (95.8% similar) in 359 aa overlap (1-359:1-354)

               10        20        30        40        50        60
pF1KE0 MWYHRLSHLHSRLQDLLKGGVIYPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MWYHRLSHLHSRLQDLLKGGVIYPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 PDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 RHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 RHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 YIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQNTVNRQWNSSLQCDIPERILTY
       ::::::::::::::::::::::::::::::::      :. .:   ...  :. .:  : 
NP_060 YIEDVGECHNHMIGIGPVLNIYPWNKELYLIRY-----NNYDRAVINTVPYDVVHRWYTA
              310       320       330            340       350     

              370                                                  
pF1KE0 RHFVSGTSIEHRGSLI                                            
                                                                   
NP_060 HRTLTIELRRPENEFWVKLKPGRVLFIDNWRVLHGRECFTGYRQLCGCYLTRDDVLNTAR
         360       370       380       390       400       410     

>>XP_011529484 (OMIM: 300777,300872) PREDICTED: trimethy  (370 aa)
 initn: 1869 init1: 1869 opt: 1881  Z-score: 2386.5  bits: 450.2 E(85289): 3.5e-126
Smith-Waterman score: 1881; 90.9% identity (93.8% similar) in 307 aa overlap (53-359:2-303)

             30        40        50        60        70        80  
pF1KE0 YPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHFELKYANTVMRFDYVWLRDHCRS
                                     :  .: . ::::::::::::::::::::::
XP_011                              MWVIKEMNQELKYANTVMRFDYVWLRDHCRS
                                            10        20        30 

             90       100       110       120       130       140  
pF1KE0 ASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTWPDGHVTKYDLNWLVKNSYEGQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTWPDGHVTKYDLNWLVKNSYEGQK
              40        50        60        70        80        90 

            150       160       170       180       190       200  
pF1KE0 QKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKFLQNFLLYGIAFVENVPPTQEHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKFLQNFLLYGIAFVENVPPTQEHT
             100       110       120       130       140       150 

            210       220       230       240       250       260  
pF1KE0 EKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALDRHTDTTYFQEPCGIQVFHCLKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALDRHTDTTYFQEPCGIQVFHCLKH
             160       170       180       190       200       210 

            270       280       290       300       310       320  
pF1KE0 EGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHEYIEDVGECHNHMIGIGPVLNIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHEYIEDVGECHNHMIGIGPVLNIY
             220       230       240       250       260       270 

            330       340       350       360       370            
pF1KE0 PWNKELYLIRLFKEKQNTVNRQWNSSLQCDIPERILTYRHFVSGTSIEHRGSLI      
       ::::::::::      :. .:   ...  :. .:  :                       
XP_011 PWNKELYLIRY-----NNYDRAVINTVPYDVVHRWYTAHRTLTIELRRPENEFWVKLKPG
             280            290       300       310       320      

XP_011 RVLFIDNWRVLHGRECFTGYRQLCGCYLTRDDVLNTARLLGLQA
        330       340       350       360       370

>>XP_016885109 (OMIM: 300777,300872) PREDICTED: trimethy  (259 aa)
 initn: 1792 init1: 1771 opt: 1771  Z-score: 2249.4  bits: 424.4 E(85289): 1.5e-118
Smith-Waterman score: 1771; 98.8% identity (99.6% similar) in 257 aa overlap (1-257:1-257)

               10        20        30        40        50        60
pF1KE0 MWYHRLSHLHSRLQDLLKGGVIYPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MWYHRLSHLHSRLQDLLKGGVIYPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 RHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHE
       :::::::::::::. .:                                           
XP_016 RHTDTTYFQEPCGFLAFSY                                         
              250                                                  

>>XP_016873892 (OMIM: 603312) PREDICTED: gamma-butyrobet  (387 aa)
 initn: 392 init1: 223 opt: 431  Z-score: 547.1  bits: 110.0 E(85289): 9.9e-24
Smith-Waterman score: 431; 28.9% identity (66.2% similar) in 225 aa overlap (71-293:29-253)

               50        60        70        80        90       100
pF1KE0 WHHTASKSLTCAWQQHEDHFELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASV
                                     .  :::::.:  ..:: .... :.: . ..
XP_016   MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEAL
                 10        20        30        40        50        

              110       120       130       140       150          
pF1KE0 DLCIKPKTIRLDETTLFFTWPDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIY--Q
       :. :  : . .:.  ...:::: : .... .:: :  .  : .  .: ....    :  .
XP_016 DVNIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGS
       60        70        80        90       100       110        

      160       170       180       190       200       210        
pF1KE0 QAQVPSVDCQSFLETNEGLKKFLQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYG
       . :.:..: .. :. .:   :.:...   ::. . ..     .. ::..:....  :.::
XP_016 ELQLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYG
      120       130       140       150       160       170        

      220       230       240       250       260       270        
pF1KE0 RMWYFTSDFSRGDTAYTKLALDRHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAA
       . :   . .. ...:::   :. :::   ...: :.:..::.:.  ::: . .:::: . 
XP_016 HTWQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVC
      180       190       200       210       220       230        

      280       290       300       310       320       330        
pF1KE0 EQVLQKAPEEFELLSKVPLKHEYIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQ
       ... .. :. :..::                                             
XP_016 QKLKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDT
      240       250       260       270       280       290        

>>XP_005253217 (OMIM: 603312) PREDICTED: gamma-butyrobet  (387 aa)
 initn: 392 init1: 223 opt: 431  Z-score: 547.1  bits: 110.0 E(85289): 9.9e-24
Smith-Waterman score: 431; 28.9% identity (66.2% similar) in 225 aa overlap (71-293:29-253)

               50        60        70        80        90       100
pF1KE0 WHHTASKSLTCAWQQHEDHFELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASV
                                     .  :::::.:  ..:: .... :.: . ..
XP_005   MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEAL
                 10        20        30        40        50        

              110       120       130       140       150          
pF1KE0 DLCIKPKTIRLDETTLFFTWPDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIY--Q
       :. :  : . .:.  ...:::: : .... .:: :  .  : .  .: ....    :  .
XP_005 DVNIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGS
       60        70        80        90       100       110        

      160       170       180       190       200       210        
pF1KE0 QAQVPSVDCQSFLETNEGLKKFLQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYG
       . :.:..: .. :. .:   :.:...   ::. . ..     .. ::..:....  :.::
XP_005 ELQLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYG
      120       130       140       150       160       170        

      220       230       240       250       260       270        
pF1KE0 RMWYFTSDFSRGDTAYTKLALDRHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAA
       . :   . .. ...:::   :. :::   ...: :.:..::.:.  ::: . .:::: . 
XP_005 HTWQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVC
      180       190       200       210       220       230        

      280       290       300       310       320       330        
pF1KE0 EQVLQKAPEEFELLSKVPLKHEYIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQ
       ... .. :. :..::                                             
XP_005 QKLKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDT
      240       250       260       270       280       290        

>>XP_011518704 (OMIM: 603312) PREDICTED: gamma-butyrobet  (387 aa)
 initn: 392 init1: 223 opt: 431  Z-score: 547.1  bits: 110.0 E(85289): 9.9e-24
Smith-Waterman score: 431; 28.9% identity (66.2% similar) in 225 aa overlap (71-293:29-253)

               50        60        70        80        90       100
pF1KE0 WHHTASKSLTCAWQQHEDHFELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASV
                                     .  :::::.:  ..:: .... :.: . ..
XP_011   MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEAL
                 10        20        30        40        50        

              110       120       130       140       150          
pF1KE0 DLCIKPKTIRLDETTLFFTWPDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIY--Q
       :. :  : . .:.  ...:::: : .... .:: :  .  : .  .: ....    :  .
XP_011 DVNIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGS
       60        70        80        90       100       110        

      160       170       180       190       200       210        
pF1KE0 QAQVPSVDCQSFLETNEGLKKFLQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYG
       . :.:..: .. :. .:   :.:...   ::. . ..     .. ::..:....  :.::
XP_011 ELQLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYG
      120       130       140       150       160       170        

      220       230       240       250       260       270        
pF1KE0 RMWYFTSDFSRGDTAYTKLALDRHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAA
       . :   . .. ...:::   :. :::   ...: :.:..::.:.  ::: . .:::: . 
XP_011 HTWQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVC
      180       190       200       210       220       230        

      280       290       300       310       320       330        
pF1KE0 EQVLQKAPEEFELLSKVPLKHEYIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQ
       ... .. :. :..::                                             
XP_011 QKLKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDT
      240       250       260       270       280       290        

>>XP_005253218 (OMIM: 603312) PREDICTED: gamma-butyrobet  (387 aa)
 initn: 392 init1: 223 opt: 431  Z-score: 547.1  bits: 110.0 E(85289): 9.9e-24
Smith-Waterman score: 431; 28.9% identity (66.2% similar) in 225 aa overlap (71-293:29-253)

               50        60        70        80        90       100
pF1KE0 WHHTASKSLTCAWQQHEDHFELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASV
                                     .  :::::.:  ..:: .... :.: . ..
XP_005   MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEAL
                 10        20        30        40        50        

              110       120       130       140       150          
pF1KE0 DLCIKPKTIRLDETTLFFTWPDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIY--Q
       :. :  : . .:.  ...:::: : .... .:: :  .  : .  .: ....    :  .
XP_005 DVNIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGS
       60        70        80        90       100       110        

      160       170       180       190       200       210        
pF1KE0 QAQVPSVDCQSFLETNEGLKKFLQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYG
       . :.:..: .. :. .:   :.:...   ::. . ..     .. ::..:....  :.::
XP_005 ELQLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYG
      120       130       140       150       160       170        

      220       230       240       250       260       270        
pF1KE0 RMWYFTSDFSRGDTAYTKLALDRHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAA
       . :   . .. ...:::   :. :::   ...: :.:..::.:.  ::: . .:::: . 
XP_005 HTWQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVC
      180       190       200       210       220       230        

      280       290       300       310       320       330        
pF1KE0 EQVLQKAPEEFELLSKVPLKHEYIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQ
       ... .. :. :..::                                             
XP_005 QKLKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDT
      240       250       260       270       280       290        

>>NP_003977 (OMIM: 603312) gamma-butyrobetaine dioxygena  (387 aa)
 initn: 392 init1: 223 opt: 431  Z-score: 547.1  bits: 110.0 E(85289): 9.9e-24
Smith-Waterman score: 431; 28.9% identity (66.2% similar) in 225 aa overlap (71-293:29-253)

               50        60        70        80        90       100
pF1KE0 WHHTASKSLTCAWQQHEDHFELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASV
                                     .  :::::.:  ..:: .... :.: . ..
NP_003   MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEAL
                 10        20        30        40        50        

              110       120       130       140       150          
pF1KE0 DLCIKPKTIRLDETTLFFTWPDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIY--Q
       :. :  : . .:.  ...:::: : .... .:: :  .  : .  .: ....    :  .
NP_003 DVNIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGS
       60        70        80        90       100       110        

      160       170       180       190       200       210        
pF1KE0 QAQVPSVDCQSFLETNEGLKKFLQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYG
       . :.:..: .. :. .:   :.:...   ::. . ..     .. ::..:....  :.::
NP_003 ELQLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYG
      120       130       140       150       160       170        

      220       230       240       250       260       270        
pF1KE0 RMWYFTSDFSRGDTAYTKLALDRHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAA
       . :   . .. ...:::   :. :::   ...: :.:..::.:.  ::: . .:::: . 
NP_003 HTWQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVC
      180       190       200       210       220       230        

      280       290       300       310       320       330        
pF1KE0 EQVLQKAPEEFELLSKVPLKHEYIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQ
       ... .. :. :..::                                             
NP_003 QKLKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDT
      240       250       260       270       280       290        

>>XP_005253216 (OMIM: 603312) PREDICTED: gamma-butyrobet  (387 aa)
 initn: 392 init1: 223 opt: 431  Z-score: 547.1  bits: 110.0 E(85289): 9.9e-24
Smith-Waterman score: 431; 28.9% identity (66.2% similar) in 225 aa overlap (71-293:29-253)

               50        60        70        80        90       100
pF1KE0 WHHTASKSLTCAWQQHEDHFELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASV
                                     .  :::::.:  ..:: .... :.: . ..
XP_005   MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEAL
                 10        20        30        40        50        

              110       120       130       140       150          
pF1KE0 DLCIKPKTIRLDETTLFFTWPDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIY--Q
       :. :  : . .:.  ...:::: : .... .:: :  .  : .  .: ....    :  .
XP_005 DVNIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGS
       60        70        80        90       100       110        

      160       170       180       190       200       210        
pF1KE0 QAQVPSVDCQSFLETNEGLKKFLQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYG
       . :.:..: .. :. .:   :.:...   ::. . ..     .. ::..:....  :.::
XP_005 ELQLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYG
      120       130       140       150       160       170        

      220       230       240       250       260       270        
pF1KE0 RMWYFTSDFSRGDTAYTKLALDRHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAA
       . :   . .. ...:::   :. :::   ...: :.:..::.:.  ::: . .:::: . 
XP_005 HTWQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVC
      180       190       200       210       220       230        

      280       290       300       310       320       330        
pF1KE0 EQVLQKAPEEFELLSKVPLKHEYIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQ
       ... .. :. :..::                                             
XP_005 QKLKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDT
      240       250       260       270       280       290        




376 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:53:20 2016 done: Fri Nov  4 01:53:21 2016
 Total Scan time:  7.830 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com