Result of FASTA (omim) for pF1KB6374
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6374, 276 aa
  1>>>pF1KB6374 276 - 276 aa - 276 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.8067+/-0.000443; mu= -6.1158+/- 0.027
 mean_var=248.0544+/-50.292, 0's: 0 Z-trim(118.0): 77  B-trim: 272 in 1/53
 Lambda= 0.081433
 statistics sampled from 30354 (30433) to 30354 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.357), width:  16
 Scan time:  7.550

The best scores are:                                      opt bits E(85289)
NP_803173 (OMIM: 606892) syntaxin-12 [Homo sapiens ( 276) 1741 217.3 2.5e-56
NP_001313508 (OMIM: 603217) syntaxin-7 isoform a [ ( 261)  900 118.5 1.3e-26
NP_003560 (OMIM: 603217) syntaxin-7 isoform a [Hom ( 261)  900 118.5 1.3e-26
NP_001313507 (OMIM: 603217) syntaxin-7 isoform a [ ( 261)  900 118.5 1.3e-26
NP_001313509 (OMIM: 603217) syntaxin-7 isoform b [ ( 239)  812 108.1 1.6e-23
XP_011534480 (OMIM: 603217) PREDICTED: syntaxin-7  ( 239)  812 108.1 1.6e-23
NP_001191797 (OMIM: 603233,603666) syntaxin-16 iso ( 272)  329 51.4 2.1e-06
NP_003754 (OMIM: 603233,603666) syntaxin-16 isofor ( 304)  329 51.5 2.3e-06
NP_001128245 (OMIM: 603233,603666) syntaxin-16 iso ( 308)  329 51.5 2.3e-06
NP_001128244 (OMIM: 603233,603666) syntaxin-16 iso ( 321)  329 51.5 2.4e-06
NP_001001433 (OMIM: 603233,603666) syntaxin-16 iso ( 325)  329 51.5 2.4e-06
XP_016873680 (OMIM: 600876) PREDICTED: syntaxin-3  ( 281)  321 50.5 4.2e-06
XP_016873677 (OMIM: 600876) PREDICTED: syntaxin-3  ( 281)  321 50.5 4.2e-06
XP_016873679 (OMIM: 600876) PREDICTED: syntaxin-3  ( 281)  321 50.5 4.2e-06
XP_016873678 (OMIM: 600876) PREDICTED: syntaxin-3  ( 281)  321 50.5 4.2e-06
NP_004168 (OMIM: 600876) syntaxin-3 isoform 1 [Hom ( 289)  321 50.5 4.3e-06
XP_005274252 (OMIM: 600876) PREDICTED: syntaxin-3  ( 289)  321 50.5 4.3e-06
NP_001971 (OMIM: 132350) syntaxin-2 isoform 1 [Hom ( 287)  311 49.3 9.6e-06
XP_016874469 (OMIM: 132350) PREDICTED: syntaxin-2  ( 319)  311 49.4   1e-05
XP_016878382 (OMIM: 601485,616172) PREDICTED: synt ( 282)  305 48.6 1.5e-05
NP_443106 (OMIM: 601485,616172) syntaxin-1B [Homo  ( 288)  305 48.6 1.6e-05
XP_016874472 (OMIM: 132350) PREDICTED: syntaxin-2  ( 260)  303 48.4 1.7e-05
NP_919337 (OMIM: 132350) syntaxin-2 isoform 2 [Hom ( 288)  303 48.4 1.8e-05
XP_016874467 (OMIM: 132350) PREDICTED: syntaxin-2  ( 320)  303 48.4   2e-05
XP_016874468 (OMIM: 132350) PREDICTED: syntaxin-2  ( 320)  303 48.4   2e-05
XP_005255578 (OMIM: 186591) PREDICTED: syntaxin-4  ( 293)  295 47.5 3.6e-05
NP_001259025 (OMIM: 186591) syntaxin-4 isoform 2 [ ( 295)  295 47.5 3.6e-05
XP_016873682 (OMIM: 600876) PREDICTED: syntaxin-3  ( 279)  294 47.3 3.7e-05
XP_016873681 (OMIM: 600876) PREDICTED: syntaxin-3  ( 279)  294 47.3 3.7e-05
XP_005274255 (OMIM: 600876) PREDICTED: syntaxin-3  ( 287)  294 47.3 3.8e-05
NP_004595 (OMIM: 186591) syntaxin-4 isoform 3 [Hom ( 297)  294 47.3 3.9e-05
NP_004594 (OMIM: 186590) syntaxin-1A isoform 1 [Ho ( 288)  291 47.0 4.9e-05
XP_016873683 (OMIM: 600876) PREDICTED: syntaxin-3  ( 269)  280 45.7 0.00011
NP_001171511 (OMIM: 600876) syntaxin-3 isoform 2 [ ( 277)  280 45.7 0.00012
NP_001259024 (OMIM: 186591) syntaxin-4 isoform 1 [ ( 219)  274 44.9 0.00016
XP_016874474 (OMIM: 132350) PREDICTED: syntaxin-2  ( 213)  271 44.5  0.0002
XP_011543523 (OMIM: 600876) PREDICTED: syntaxin-3  ( 192)  269 44.3 0.00021
XP_016874473 (OMIM: 132350) PREDICTED: syntaxin-2  ( 214)  263 43.6 0.00038
XP_005253614 (OMIM: 132350) PREDICTED: syntaxin-2  ( 277)  265 43.9 0.00039
XP_016874471 (OMIM: 132350) PREDICTED: syntaxin-2  ( 309)  265 43.9 0.00043
XP_016874470 (OMIM: 132350) PREDICTED: syntaxin-2  ( 317)  262 43.6 0.00056
XP_011544227 (OMIM: 186591) PREDICTED: syntaxin-4  ( 154)  235 40.2  0.0028


>>NP_803173 (OMIM: 606892) syntaxin-12 [Homo sapiens]     (276 aa)
 initn: 1741 init1: 1741 opt: 1741  Z-score: 1132.3  bits: 217.3 E(85289): 2.5e-56
Smith-Waterman score: 1741; 100.0% identity (100.0% similar) in 276 aa overlap (1-276:1-276)

               10        20        30        40        50        60
pF1KB6 MSYGPLDMYRNPGPSGPQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_803 MSYGPLDMYRNPGPSGPQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_803 ENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_803 QRRVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQEDEVAITEQDLEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATEQLQRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_803 IKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATEQLQRA
              190       200       210       220       230       240

              250       260       270      
pF1KB6 AYYQKKSRKKMCILVLVLSVIILILGLIIWLVYKTK
       ::::::::::::::::::::::::::::::::::::
NP_803 AYYQKKSRKKMCILVLVLSVIILILGLIIWLVYKTK
              250       260       270      

>>NP_001313508 (OMIM: 603217) syntaxin-7 isoform a [Homo  (261 aa)
 initn: 667 init1: 667 opt: 900  Z-score: 598.7  bits: 118.5 E(85289): 1.3e-26
Smith-Waterman score: 900; 53.8% identity (84.6% similar) in 266 aa overlap (8-270:1-257)

               10        20        30        40        50        60
pF1KB6 MSYGPLDMYRNPGPSGPQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ
              :  .:: .:    : ... :  :.:::.:.: ...:.  ..:::: ::: .:.
NP_001        MSYTPGVGG----DPAQLAQRISSNIQKITQCSVEIQRTLNQLGTPQDSPELR
                          10        20        30        40         

               70        80        90       100       110       120
pF1KB6 ENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAV
       ..::: :. ::::::::.. .::.::::   . :::::...::.::. .:...:.::: :
NP_001 QQLQQKQQYTNQLAKETDKYIKEFGSLP--TTPSEQRQRKIQKDRLVAEFTTSLTNFQKV
      50        60        70          80        90       100       

              130       140          150       160       170       
pF1KB6 QRRVSEKEKESIARARAGSRLSA---EERQREEQLVSFDSHEEWNQMQSQEDEVAITEQD
       ::...:.::: .::.::.::.:.   :. ..:..:::..:. .  :.: :..:  :::.:
NP_001 QRQAAEREKEFVARVRASSRVSGSFPEDSSKERNLVSWESQTQ-PQVQVQDEE--ITEDD
       110       120       130       140       150          160    

       180       190       200       210       220       230       
pF1KB6 LELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATEQL
       :.::.:::..::::::::.:.:.:::::.::::.:::.:::::::::..::::..:..::
NP_001 LRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQL
          170       180       190       200       210       220    

       240       250       260       270      
pF1KB6 QRAAYYQKKSRKKMCILVLVLSVIILILGLIIWLVYKTK
       .::: ::.:::: .::..:.: . . :..::::      
NP_001 SRAADYQRKSRKTLCIIILILVIGVAIISLIIWGLNH  
          230       240       250       260   

>>NP_003560 (OMIM: 603217) syntaxin-7 isoform a [Homo sa  (261 aa)
 initn: 667 init1: 667 opt: 900  Z-score: 598.7  bits: 118.5 E(85289): 1.3e-26
Smith-Waterman score: 900; 53.8% identity (84.6% similar) in 266 aa overlap (8-270:1-257)

               10        20        30        40        50        60
pF1KB6 MSYGPLDMYRNPGPSGPQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ
              :  .:: .:    : ... :  :.:::.:.: ...:.  ..:::: ::: .:.
NP_003        MSYTPGVGG----DPAQLAQRISSNIQKITQCSVEIQRTLNQLGTPQDSPELR
                          10        20        30        40         

               70        80        90       100       110       120
pF1KB6 ENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAV
       ..::: :. ::::::::.. .::.::::   . :::::...::.::. .:...:.::: :
NP_003 QQLQQKQQYTNQLAKETDKYIKEFGSLP--TTPSEQRQRKIQKDRLVAEFTTSLTNFQKV
      50        60        70          80        90       100       

              130       140          150       160       170       
pF1KB6 QRRVSEKEKESIARARAGSRLSA---EERQREEQLVSFDSHEEWNQMQSQEDEVAITEQD
       ::...:.::: .::.::.::.:.   :. ..:..:::..:. .  :.: :..:  :::.:
NP_003 QRQAAEREKEFVARVRASSRVSGSFPEDSSKERNLVSWESQTQ-PQVQVQDEE--ITEDD
       110       120       130       140       150          160    

       180       190       200       210       220       230       
pF1KB6 LELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATEQL
       :.::.:::..::::::::.:.:.:::::.::::.:::.:::::::::..::::..:..::
NP_003 LRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQL
          170       180       190       200       210       220    

       240       250       260       270      
pF1KB6 QRAAYYQKKSRKKMCILVLVLSVIILILGLIIWLVYKTK
       .::: ::.:::: .::..:.: . . :..::::      
NP_003 SRAADYQRKSRKTLCIIILILVIGVAIISLIIWGLNH  
          230       240       250       260   

>>NP_001313507 (OMIM: 603217) syntaxin-7 isoform a [Homo  (261 aa)
 initn: 667 init1: 667 opt: 900  Z-score: 598.7  bits: 118.5 E(85289): 1.3e-26
Smith-Waterman score: 900; 53.8% identity (84.6% similar) in 266 aa overlap (8-270:1-257)

               10        20        30        40        50        60
pF1KB6 MSYGPLDMYRNPGPSGPQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ
              :  .:: .:    : ... :  :.:::.:.: ...:.  ..:::: ::: .:.
NP_001        MSYTPGVGG----DPAQLAQRISSNIQKITQCSVEIQRTLNQLGTPQDSPELR
                          10        20        30        40         

               70        80        90       100       110       120
pF1KB6 ENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAV
       ..::: :. ::::::::.. .::.::::   . :::::...::.::. .:...:.::: :
NP_001 QQLQQKQQYTNQLAKETDKYIKEFGSLP--TTPSEQRQRKIQKDRLVAEFTTSLTNFQKV
      50        60        70          80        90       100       

              130       140          150       160       170       
pF1KB6 QRRVSEKEKESIARARAGSRLSA---EERQREEQLVSFDSHEEWNQMQSQEDEVAITEQD
       ::...:.::: .::.::.::.:.   :. ..:..:::..:. .  :.: :..:  :::.:
NP_001 QRQAAEREKEFVARVRASSRVSGSFPEDSSKERNLVSWESQTQ-PQVQVQDEE--ITEDD
       110       120       130       140       150          160    

       180       190       200       210       220       230       
pF1KB6 LELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATEQL
       :.::.:::..::::::::.:.:.:::::.::::.:::.:::::::::..::::..:..::
NP_001 LRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQL
          170       180       190       200       210       220    

       240       250       260       270      
pF1KB6 QRAAYYQKKSRKKMCILVLVLSVIILILGLIIWLVYKTK
       .::: ::.:::: .::..:.: . . :..::::      
NP_001 SRAADYQRKSRKTLCIIILILVIGVAIISLIIWGLNH  
          230       240       250       260   

>>NP_001313509 (OMIM: 603217) syntaxin-7 isoform b [Homo  (239 aa)
 initn: 575 init1: 575 opt: 812  Z-score: 543.4  bits: 108.1 E(85289): 1.6e-23
Smith-Waterman score: 812; 53.4% identity (83.7% similar) in 251 aa overlap (8-255:1-239)

               10        20        30        40        50        60
pF1KB6 MSYGPLDMYRNPGPSGPQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ
              :  .:: .:    : ... :  :.:::.:.: ...:.  ..:::: ::: .:.
NP_001        MSYTPGVGG----DPAQLAQRISSNIQKITQCSVEIQRTLNQLGTPQDSPELR
                          10        20        30        40         

               70        80        90       100       110       120
pF1KB6 ENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAV
       ..::: :. ::::::::.. .::.::::   . :::::...::.::. .:...:.::: :
NP_001 QQLQQKQQYTNQLAKETDKYIKEFGSLP--TTPSEQRQRKIQKDRLVAEFTTSLTNFQKV
      50        60        70          80        90       100       

              130       140          150       160       170       
pF1KB6 QRRVSEKEKESIARARAGSRLSA---EERQREEQLVSFDSHEEWNQMQSQEDEVAITEQD
       ::...:.::: .::.::.::.:.   :. ..:..:::..:. .  :.: :..:  :::.:
NP_001 QRQAAEREKEFVARVRASSRVSGSFPEDSSKERNLVSWESQTQ-PQVQVQDEE--ITEDD
       110       120       130       140       150          160    

       180       190       200       210       220       230       
pF1KB6 LELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATEQL
       :.::.:::..::::::::.:.:.:::::.::::.:::.:::::::::..::::..:..::
NP_001 LRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQL
          170       180       190       200       210       220    

       240       250       260       270      
pF1KB6 QRAAYYQKKSRKKMCILVLVLSVIILILGLIIWLVYKTK
       .::: ::::.    :.:.                     
NP_001 SRAADYQKKDS---CMLM                     
          230                                 

>>XP_011534480 (OMIM: 603217) PREDICTED: syntaxin-7 isof  (239 aa)
 initn: 575 init1: 575 opt: 812  Z-score: 543.4  bits: 108.1 E(85289): 1.6e-23
Smith-Waterman score: 812; 53.4% identity (83.7% similar) in 251 aa overlap (8-255:1-239)

               10        20        30        40        50        60
pF1KB6 MSYGPLDMYRNPGPSGPQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQ
              :  .:: .:    : ... :  :.:::.:.: ...:.  ..:::: ::: .:.
XP_011        MSYTPGVGG----DPAQLAQRISSNIQKITQCSVEIQRTLNQLGTPQDSPELR
                          10        20        30        40         

               70        80        90       100       110       120
pF1KB6 ENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAV
       ..::: :. ::::::::.. .::.::::   . :::::...::.::. .:...:.::: :
XP_011 QQLQQKQQYTNQLAKETDKYIKEFGSLP--TTPSEQRQRKIQKDRLVAEFTTSLTNFQKV
      50        60        70          80        90       100       

              130       140          150       160       170       
pF1KB6 QRRVSEKEKESIARARAGSRLSA---EERQREEQLVSFDSHEEWNQMQSQEDEVAITEQD
       ::...:.::: .::.::.::.:.   :. ..:..:::..:. .  :.: :..:  :::.:
XP_011 QRQAAEREKEFVARVRASSRVSGSFPEDSSKERNLVSWESQTQ-PQVQVQDEE--ITEDD
       110       120       130       140       150          160    

       180       190       200       210       220       230       
pF1KB6 LELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATEQL
       :.::.:::..::::::::.:.:.:::::.::::.:::.:::::::::..::::..:..::
XP_011 LRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQL
          170       180       190       200       210       220    

       240       250       260       270      
pF1KB6 QRAAYYQKKSRKKMCILVLVLSVIILILGLIIWLVYKTK
       .::: ::::.    :.:.                     
XP_011 SRAADYQKKDS---CMLM                     
          230                                 

>>NP_001191797 (OMIM: 603233,603666) syntaxin-16 isoform  (272 aa)
 initn: 316 init1: 292 opt: 329  Z-score: 235.9  bits: 51.4 E(85289): 2.1e-06
Smith-Waterman score: 329; 29.3% identity (62.5% similar) in 256 aa overlap (17-268:23-267)

                     10        20        30        40        50    
pF1KB6       MSYGPLDMYRNPGPSGPQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQ
                             :.  :  . ::   : :..  .  :....   .  : .
NP_001 MALVSGISLDPEAAIGVTKRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDKHLNRPTLD
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KB6 DSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDFSAAL
       :::   :. . .. .:.....  ..  . . .::     :. :    :. ::...  :.:
NP_001 DSS---EEEHAIEITTQEITQLFHRCQRAVQALP-----SRARACSEQEGRLLGNVVASL
                  70        80        90            100       110  

          120        130       140       150       160          170
pF1KB6 NNFQAVQR-RVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQSQ---EDE
          ::.:.  .: .. .:    :  .:    ..  . ..  .:. .. : .  .   ::.
NP_001 A--QALQELSTSFRHAQSGYLKRMKNREERSQHFFDTSVPLMDDGDD-NTLYHRGFTEDQ
              120       130       140       150        160         

              180       190       200       210       220       230
pF1KB6 VAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHV
       ....::.  ...:::  :::.  .: :.:.::.::. :: .:: ..: :. :::.: ...
NP_001 LVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKT
     170       180       190       200       210       220         

              240       250       260       270      
pF1KB6 ERATEQLQRAAYYQKKSRKKMCILVLVLSVIILILGLIIWLVYKTK
       : . .::..:  ::::.:: . ::.: . .:.::. :.        
NP_001 EDGLKQLHKAEQYQKKNRKMLVILILFVIIIVLIVVLVGVKSR   
     230       240       250       260       270     

>>NP_003754 (OMIM: 603233,603666) syntaxin-16 isoform b   (304 aa)
 initn: 316 init1: 292 opt: 329  Z-score: 235.2  bits: 51.5 E(85289): 2.3e-06
Smith-Waterman score: 329; 29.3% identity (62.5% similar) in 256 aa overlap (17-268:55-299)

                             10        20        30        40      
pF1KB6               MSYGPLDMYRNPGPSGPQLRDFSSIIQTCSGNIQRISQATAQIKNL
                                     :.  :  . ::   : :..  .  :.... 
NP_003 AEQLADDRMALVSGISLDPEAAIGVTKRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDK
           30        40        50        60        70        80    

         50        60        70        80        90       100      
pF1KB6 MSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERL
         .  : .:::   :. . .. .:.....  ..  . . .::     :. :    :. ::
NP_003 HLNRPTLDDSS---EEEHAIEITTQEITQLFHRCQRAVQALP-----SRARACSEQEGRL
           90          100       110       120            130      

        110       120        130       140       150       160     
pF1KB6 MNDFSAALNNFQAVQR-RVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQ
       ...  :.:   ::.:.  .: .. .:    :  .:    ..  . ..  .:. .. : . 
NP_003 LGNVVASLA--QALQELSTSFRHAQSGYLKRMKNREERSQHFFDTSVPLMDDGDD-NTLY
        140         150       160       170       180        190   

            170       180       190       200       210       220  
pF1KB6 SQ---EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEAN
        .   ::.....::.  ...:::  :::.  .: :.:.::.::. :: .:: ..: :. :
NP_003 HRGFTEDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYN
           200       210       220       230       240       250   

            230       240       250       260       270      
pF1KB6 VESSEVHVERATEQLQRAAYYQKKSRKKMCILVLVLSVIILILGLIIWLVYKTK
       ::.: ...: . .::..:  ::::.:: . ::.: . .:.::. :.        
NP_003 VEQSCIKTEDGLKQLHKAEQYQKKNRKMLVILILFVIIIVLIVVLVGVKSR   
           260       270       280       290       300       

>>NP_001128245 (OMIM: 603233,603666) syntaxin-16 isoform  (308 aa)
 initn: 316 init1: 292 opt: 329  Z-score: 235.1  bits: 51.5 E(85289): 2.3e-06
Smith-Waterman score: 329; 29.3% identity (62.5% similar) in 256 aa overlap (17-268:59-303)

                             10        20        30        40      
pF1KB6               MSYGPLDMYRNPGPSGPQLRDFSSIIQTCSGNIQRISQATAQIKNL
                                     :.  :  . ::   : :..  .  :.... 
NP_001 LDELADDRMALVSGISLDPEAAIGVTKRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDK
       30        40        50        60        70        80        

         50        60        70        80        90       100      
pF1KB6 MSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERL
         .  : .:::   :. . .. .:.....  ..  . . .::     :. :    :. ::
NP_001 HLNRPTLDDSS---EEEHAIEITTQEITQLFHRCQRAVQALP-----SRARACSEQEGRL
       90          100       110       120            130       140

        110       120        130       140       150       160     
pF1KB6 MNDFSAALNNFQAVQR-RVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQ
       ...  :.:   ::.:.  .: .. .:    :  .:    ..  . ..  .:. .. : . 
NP_001 LGNVVASLA--QALQELSTSFRHAQSGYLKRMKNREERSQHFFDTSVPLMDDGDD-NTLY
                150       160       170       180       190        

            170       180       190       200       210       220  
pF1KB6 SQ---EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEAN
        .   ::.....::.  ...:::  :::.  .: :.:.::.::. :: .:: ..: :. :
NP_001 HRGFTEDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYN
       200       210       220       230       240       250       

            230       240       250       260       270      
pF1KB6 VESSEVHVERATEQLQRAAYYQKKSRKKMCILVLVLSVIILILGLIIWLVYKTK
       ::.: ...: . .::..:  ::::.:: . ::.: . .:.::. :.        
NP_001 VEQSCIKTEDGLKQLHKAEQYQKKNRKMLVILILFVIIIVLIVVLVGVKSR   
       260       270       280       290       300           

>>NP_001128244 (OMIM: 603233,603666) syntaxin-16 isoform  (321 aa)
 initn: 315 init1: 292 opt: 329  Z-score: 234.9  bits: 51.5 E(85289): 2.4e-06
Smith-Waterman score: 329; 29.3% identity (62.5% similar) in 256 aa overlap (17-268:72-316)

                             10        20        30        40      
pF1KB6               MSYGPLDMYRNPGPSGPQLRDFSSIIQTCSGNIQRISQATAQIKNL
                                     :.  :  . ::   : :..  .  :.... 
NP_001 IAALADDRMALVSGISLDPEAAIGVTKRPPPKWVDGVDEIQYDVGRIKQKMKELASLHDK
              50        60        70        80        90       100 

         50        60        70        80        90       100      
pF1KB6 MSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERL
         .  : .:::   :. . .. .:.....  ..  . . .::     :. :    :. ::
NP_001 HLNRPTLDDSS---EEEHAIEITTQEITQLFHRCQRAVQALP-----SRARACSEQEGRL
             110          120       130       140            150   

        110       120        130       140       150       160     
pF1KB6 MNDFSAALNNFQAVQR-RVSEKEKESIARARAGSRLSAEERQREEQLVSFDSHEEWNQMQ
       ...  :.:   ::.:.  .: .. .:    :  .:    ..  . ..  .:. .. : . 
NP_001 LGNVVASLA--QALQELSTSFRHAQSGYLKRMKNREERSQHFFDTSVPLMDDGDD-NTLY
           160         170       180       190       200        210

            170       180       190       200       210       220  
pF1KB6 SQ---EDEVAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSIEAN
        .   ::.....::.  ...:::  :::.  .: :.:.::.::. :: .:: ..: :. :
NP_001 HRGFTEDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYN
              220       230       240       250       260       270

            230       240       250       260       270      
pF1KB6 VESSEVHVERATEQLQRAAYYQKKSRKKMCILVLVLSVIILILGLIIWLVYKTK
       ::.: ...: . .::..:  ::::.:: . ::.: . .:.::. :.        
NP_001 VEQSCIKTEDGLKQLHKAEQYQKKNRKMLVILILFVIIIVLIVVLVGVKSR   
              280       290       300       310       320    




276 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:49:10 2016 done: Fri Nov  4 22:49:11 2016
 Total Scan time:  7.550 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com