Result of FASTA (ccds) for pF1KB9552
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9552, 466 aa
  1>>>pF1KB9552 466 - 466 aa - 466 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7342+/-0.000787; mu= 4.2724+/- 0.048
 mean_var=207.8376+/-41.944, 0's: 0 Z-trim(116.0): 58  B-trim: 241 in 2/52
 Lambda= 0.088964
 statistics sampled from 16520 (16578) to 16520 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.802), E-opt: 0.2 (0.509), width:  16
 Scan time:  3.190

The best scores are:                                      opt bits E(32554)
CCDS13964.1 SOX10 gene_id:6663|Hs108|chr22         ( 466) 3261 430.6 1.6e-120
CCDS11689.1 SOX9 gene_id:6662|Hs108|chr17          ( 509) 1350 185.4 1.2e-46
CCDS10428.1 SOX8 gene_id:30812|Hs108|chr16         ( 446)  869 123.6 4.1e-28
CCDS6159.1 SOX17 gene_id:64321|Hs108|chr8          ( 414)  436 68.0 2.1e-11
CCDS12995.1 SOX12 gene_id:6666|Hs108|chr20         ( 315)  422 66.1 5.9e-11


>>CCDS13964.1 SOX10 gene_id:6663|Hs108|chr22              (466 aa)
 initn: 3261 init1: 3261 opt: 3261  Z-score: 2277.1  bits: 430.6 E(32554): 1.6e-120
Smith-Waterman score: 3261; 100.0% identity (100.0% similar) in 466 aa overlap (1-466:1-466)

               10        20        30        40        50        60
pF1KB9 MAEEQDLSEVELSPVGSEEPRCLSPGSAPSLGPDGGGGGSGLRASPGPGELGKVKKEQQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAEEQDLSEVELSPVGSEEPRCLSPGSAPSLGPDGGGGGSGLRASPGPGELGKVKKEQQD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GEADDDKFPVCIREAVSQVLSGYDWTLVPMPVRVNGASKSKPHVKRPMNAFMVWAQAARR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GEADDDKFPVCIREAVSQVLSGYDWTLVPMPVRVNGASKSKPHVKRPMNAFMVWAQAARR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 KLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDYKYQPRRRKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDYKYQPRRRKN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 GKAAQGEAECPGGEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSDGNPEHPSGQSHGPPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GKAAQGEAECPGGEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSDGNPEHPSGQSHGPPT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 PPTTPKTELQSGKADPKRDGRSMGEGGKPHIDFGNVDIGEISHEVMSNMETFDVAELDQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PPTTPKTELQSGKADPKRDGRSMGEGGKPHIDFGNVDIGEISHEVMSNMETFDVAELDQY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 LPPNGHPGHVSSYSAAGYGLGSALAVASGHSAWISKPPGVALPTVSPPGVDAKAQVKTET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LPPNGHPGHVSSYSAAGYGLGSALAVASGHSAWISKPPGVALPTVSPPGVDAKAQVKTET
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 AGPQGPPHYTDQPSTSQIAYTSLSLPHYGSAFPSISRPQFDYSDHQPSGPYYGHSGQASG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AGPQGPPHYTDQPSTSQIAYTSLSLPHYGSAFPSISRPQFDYSDHQPSGPYYGHSGQASG
              370       380       390       400       410       420

              430       440       450       460      
pF1KB9 LYSAFSYMGPSQRPLYTAISDPSPSGPQSHSPTHWEQPVYTTLSRP
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LYSAFSYMGPSQRPLYTAISDPSPSGPQSHSPTHWEQPVYTTLSRP
              430       440       450       460      

>>CCDS11689.1 SOX9 gene_id:6662|Hs108|chr17               (509 aa)
 initn: 1439 init1: 805 opt: 1350  Z-score: 951.0  bits: 185.4 E(32554): 1.2e-46
Smith-Waterman score: 1624; 54.0% identity (72.2% similar) in 493 aa overlap (18-456:13-499)

               10        20        30            40        50      
pF1KB9 MAEEQDLSEVELSPVGSEEPRCLSPGSAPSLGPDGGGG----GSGLRASPGPGELGKVKK
                        :. . :: . .:... :..:.    :::  .     . .   :
CCDS11      MNLLDPFMKMTDEQEKGLSGAPSPTMSEDSAGSPCPSGSGSDTENTRPQENTFPK
                    10        20        30        40        50     

         60          70        80        90       100       110    
pF1KB9 EQQD--GEADDDKFPVCIREAVSQVLSGYDWTLVPMPVRVNGASKSKPHVKRPMNAFMVW
        . :   :...:::::::::::::::.:::::::::::::::.::.::::::::::::::
CCDS11 GEPDLKKESEEDKFPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVW
          60        70        80        90       100       110     

          120       130       140       150       160       170    
pF1KB9 AQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDYKYQ
       ::::::::::::::::::::::::::::::::::.::::.:::::::.::::::::::::
CCDS11 AQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQ
         120       130       140       150       160       170     

          180       190       200       210       220        230   
pF1KB9 PRRRKNGKAAQGEAECPGGEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSD-GNPEHPSG
       :::::. : .:.:::    :: .    . .: .:. . :  : . :  ::.  .: . ::
CCDS11 PRRRKSVKNGQAEAE----EATEQTHISPNAIFKALQADSPHSSSG--MSEVHSPGEHSG
         180       190           200       210         220         

           240       250       260        270       280       290  
pF1KB9 QSHGPPTPPTTPKTELQSGKADPKRDGRSMGEGGK-PHIDFGNVDIGEISHEVMSNMETF
       ::.:::::::::::..: :::: ::.:: . :::. : ::: .:::::.: .:.::.:::
CCDS11 QSQGPPTPPTTPKTDVQPGKADLKREGRPLPEGGRQPPIDFRDVDIGELSSDVISNIETF
     230       240       250       260       270       280         

            300           310       320        330           340   
pF1KB9 DVAELDQYLPPNGHPG----HVSSYSAAGYGLGSALAV-ASGHSAWISK----PPGVALP
       :: :.:::::::::::    : .   ...::..:. :. ::.  .:.::    ::    :
CCDS11 DVNEFDQYLPPNGHPGVPATHGQVTYTGSYGISSTAATPASAGHVWMSKQQAPPPPPQQP
     290       300       310       320       330       340         

           350            360                                  370 
pF1KB9 TVSPPGVDAKAQVKTE-----TAGPQ---------------------------GPPHYTD
         .::. .:  : ..      .: ::                           .: ::..
CCDS11 PQAPPAPQAPPQPQAAPPQQPAAPPQQPQAHTLTTLSSEPGQSQRTHIKTEQLSPSHYSE
     350       360       370       380       390       400         

               380       390       400       410        420        
pF1KB9 QP--STSQIAYTSLSLPHYGSAFPSISRPQFDYSDHQPSGPYYGHS-GQASGLYSAFSYM
       :   : .::::. ..::::. ..: :.: :.::.::: :. ::.:. ::..::::.:.::
CCDS11 QQQHSPQQIAYSPFNLPHYSPSYPPITRSQYDYTDHQNSSSYYSHAAGQGTGLYSTFTYM
     410       420       430       440       450       460         

      430       440         450       460      
pF1KB9 GPSQRPLYTAISDPS--PSGPQSHSPTHWEQPVYTTLSRP
       .:.:::.:: :.: :  :: ::.::: :::          
CCDS11 NPAQRPMYTPIADTSGVPSIPQTHSPQHWEQPVYTQLTRP
     470       480       490       500         

>>CCDS10428.1 SOX8 gene_id:30812|Hs108|chr16              (446 aa)
 initn: 1010 init1: 579 opt: 869  Z-score: 618.1  bits: 123.6 E(32554): 4.1e-28
Smith-Waterman score: 1281; 50.2% identity (68.1% similar) in 474 aa overlap (10-466:2-446)

               10        20        30          40         50       
pF1KB9 MAEEQDLSEVELSPVGSEEPRCLSPGSAPSLG--PDGGGGGSGLRA-SPGPGELG-KVKK
                ...: . :. : :   :.: :..   :. . .    : : : :. :  :  
CCDS10         MLDMSEARSQPP-CSPSGTASSMSHVEDSDSDAPPSPAGSEGLGRAGVAVGG
                       10         20        30        40        50 

         60         70        80        90         100       110   
pF1KB9 EQQD-GEADDDKFPVCIREAVSQVLSGYDWTLVPMPVRVNG--ASKSKPHVKRPMNAFMV
        . : .:: :..::.:::.::::::.::::.::::::: .:  : :.:::::::::::::
CCDS10 ARGDPAEAADERFPACIRDAVSQVLKGYDWSLVPMPVRGGGGGALKAKPHVKRPMNAFMV
              60        70        80        90       100       110 

           120       130       140       150       160       170   
pF1KB9 WAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDYKY
       ::::::::::::::::::::::::::::::::.::.::::.:::::::.:::::::::::
CCDS10 WAQAARRKLADQYPHLHNAELSKTLGKLWRLLSESEKRPFVEEAERLRVQHKKDHPDYKY
             120       130       140       150       160       170 

           180       190       200       210       220       230   
pF1KB9 QPRRRKNGKAAQGEAECPGGEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSDGNPEHPSG
       ::::::..::  :...  .: :: :   .  : ::.      . : :.    :.  : .:
CCDS10 QPRRRKSAKA--GHSDSDSG-AELGPHPGGGAVYKA------EAGLGDGHHHGD--H-TG
             180          190       200             210            

           240       250         260       270       280       290 
pF1KB9 QSHGPPTPPTTPKTELQSGKADP--KRDGRSMGEGGKPHIDFGNVDIGEISHEVMSNMET
       :.:::::::::::::::.. : :  : .::   ..:. .:::.::::.:.: :::..:..
CCDS10 QTHGPPTPPTTPKTELQQAGAKPELKLEGRRPVDSGRQNIDFSNVDISELSSEVMGTMDA
     220       230       240       250       260       270         

             300       310       320       330         340         
pF1KB9 FDVAELDQYLPPNGHPGHVSSYSAAGYGLGSALAVASGHSAWISK--PPGVALPTVSPPG
       ::: :.::::: .: :.        : . :.:   :..  .:  :  : . : :: . : 
CCDS10 FDVHEFDQYLPLGG-PAP----PEPGQAYGGAYFHAGASPVWAHKSAPSASASPTETGP-
     280       290            300       310       320       330    

     350       360       370       380       390       400         
pF1KB9 VDAKAQVKTETAGPQGPPHYTDQPSTSQIAYTSLSLPHYGSAFPSISRPQF-----DYSD
          . ..:::   :. : :: :::  :   : : :    .:: :.     :     ::.:
CCDS10 --PRPHIKTEQ--PS-PGHYGDQPRGSP-DYGSCS--GQSSATPAAPAGPFAGSQGDYGD
             340          350        360         370       380     

          410       420       430       440       450        460   
pF1KB9 HQPSGPYYGHSGQASGLYSAFSYMGPSQRPLYTAISDPSPSGPQSHSPT-HWEQPVYTTL
        : :. : .. : : :::.   . .: .::  . . . . . : .:::: ::.:::::::
CCDS10 LQASSYYGAYPGYAPGLYQYPCFHSP-RRPYASPLLN-GLALPPAHSPTSHWDQPVYTTL
         390       400       410        420        430       440   

          
pF1KB9 SRP
       .::
CCDS10 TRP
          

>>CCDS6159.1 SOX17 gene_id:64321|Hs108|chr8               (414 aa)
 initn: 451 init1: 410 opt: 436  Z-score: 318.2  bits: 68.0 E(32554): 2.1e-11
Smith-Waterman score: 466; 35.4% identity (55.4% similar) in 325 aa overlap (91-410:55-330)

               70        80        90       100       110       120
pF1KB9 GEADDDKFPVCIREAVSQVLSGYDWTLVPMPVRVNGASKSKPHVKRPMNAFMVWAQAARR
                                     :. . : .:.. ...::::::::::.  :.
CCDS61 AGLGPCPWAESLSPIGDMKVKGEAPANSGAPAGAAGRAKGESRIRRPMNAFMVWAKDERK
           30        40        50        60        70        80    

              130       140       150       160       170       180
pF1KB9 KLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDYKYQPRRRKN
       .::.: : :::::::: ::: :. :. ..::::.:::::::.:: .:::.:::.:::::.
CCDS61 RLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRKQ
           90       100       110       120       130       140    

              190       200       210       220        230         
pF1KB9 GKAAQGEAECPGGEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSDG-NPEHP-SGQSHGP
        :  .   .  ::  .  : :  ::    : :    :  :    :: . . : .:   ::
CCDS61 VKRLK---RVEGGFLH--GLAEPQA----AALG---PEGGRVAMDGLGLQFPEQGFPAGP
             150         160              170       180       190  

      240       250       260       270       280       290        
pF1KB9 PTPPTTPKTELQSGKADPKRDGRSMGEGGKPHIDFGNVDIGEISHEVMSNMETFDVAELD
       :  :  :.   ..:.    :: .:.:    : .:      :         . : :.. ::
CCDS61 PLLP--PH---MGGHY---RDCQSLGA---PPLD------GY-------PLPTPDTSPLD
                 200          210                       220        

      300       310       320       330       340       350        
pF1KB9 QYLPPNGHPGHVSSYSAAGYGLGSALAVASGHSAWISKPPGVALPTVSPPGVDAKAQVKT
          :    :    .. :: .  :.  :...   : .:   :   :   ::.   . ..  
CCDS61 GVDPD---P----AFFAAPMP-GDCPAAGTYSYAQVSDYAG---PP-EPPAGPMHPRLGP
      230              240        250       260           270      

      360       370       380       390       400          410     
pF1KB9 ETAGPQGPPHYTDQPSTSQIAYTSLSLPHYGSAFPSISRPQFDYS---DHQPSGPYYGHS
       : :::.  :     ::. .. : ... :  :..     .:: ...   .:.: ::     
CCDS61 EPAGPS-IPGLLAPPSALHVYYGAMGSPGAGGGRGFQMQPQHQHQHQHQHHPPGPGQPSP
        280        290       300       310       320       330     

         420       430       440       450       460               
pF1KB9 GQASGLYSAFSYMGPSQRPLYTAISDPSPSGPQSHSPTHWEQPVYTTLSRP         
                                                                   
CCDS61 PPEALPCRDGTDPSQPAELLGEVDRTEFEQYLHFVCKPEMGLPYQGHDSGVNLPDSHGAI
         340       350       360       370       380       390     

>>CCDS12995.1 SOX12 gene_id:6666|Hs108|chr20              (315 aa)
 initn: 463 init1: 414 opt: 422  Z-score: 310.2  bits: 66.1 E(32554): 5.9e-11
Smith-Waterman score: 446; 33.2% identity (57.2% similar) in 271 aa overlap (103-369:39-285)

             80        90       100       110       120       130  
pF1KB9 REAVSQVLSGYDWTLVPMPVRVNGASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNA
                                     :.::::::::::.:  :::. ::.: .:::
CCDS12 AKRDGGPPPPGPGPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNA
       10        20        30        40        50        60        

            140       150       160       170       180       190  
pF1KB9 ELSKTLGKLWRLLNESDKRPFIEEAERLRMQHKKDHPDYKYQPRRRKNGKAAQGEAECPG
       :.:: ::. :.::..:.: ::..::::::..:  :.:::::.::....:  :... . ::
CCDS12 EISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPAKARPRPPG
       70        80        90       100       110       120        

            200       210       220       230       240       250  
pF1KB9 GEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSDGNPEHPSGQSHGPPTPPTTPKTELQSG
       :   .:: . ..    . .:    ::.:.  . :.:   .: . .:         ::   
CCDS12 G---SGGGSRLKP---GPQL----PGRGGRRAAGGPL--GGGAAAPEDDDEDDDEELLEV
         130          140           150         160       170      

            260       270       280       290       300       310  
pF1KB9 KADPKRDGRSMGEGGKPHIDFGNVDIGEISHEVMSNMETFDVAELDQYLPPNGHPGHVSS
       .   .  :: . .     .  : .  :.  .    . :   .:   .  : . .  .   
CCDS12 RL-VETPGRELWR----MVPAGRAARGQAERAQGPSGEGAAAAAAASPTPSEDEEPEEEE
         180           190       200       210       220       230 

            320       330          340       350        360        
pF1KB9 YSAAGYGLGSALAVASGHSA--WISK-PPGVALPTVSPPGVDAKAQVKT-ETAGPQGPPH
         ::.   :   .::::. .  ..:. :::       : :.: .:  .  .   :.:  :
CCDS12 EEAAAAEEGEEETVASGEESLGFLSRLPPG-------PAGLDCSALDRDPDLQPPSGTSH
             240       250       260              270       280    

      370       380       390       400       410       420        
pF1KB9 YTDQPSTSQIAYTSLSLPHYGSAFPSISRPQFDYSDHQPSGPYYGHSGQASGLYSAFSYM
       .                                                           
CCDS12 FEFPDYCTPEVTEMIAGDWRPSSIADLVFTY                             
          290       300       310                                  




466 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:06:27 2016 done: Sat Nov  5 02:06:28 2016
 Total Scan time:  3.190 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com