Result of FASTA (omim) for pF1KB6854
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6854, 194 aa
  1>>>pF1KB6854 194 - 194 aa - 194 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4482+/-0.000316; mu= 12.4376+/- 0.020
 mean_var=62.9254+/-12.581, 0's: 0 Z-trim(115.7): 13  B-trim: 0 in 0/55
 Lambda= 0.161682
 statistics sampled from 26321 (26333) to 26321 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.309), width:  16
 Scan time:  5.430

The best scores are:                                      opt bits E(85289)
NP_001308633 (OMIM: 603631) 40S ribosomal protein  ( 194) 1279 306.5 1.8e-83
NP_001004 (OMIM: 603631) 40S ribosomal protein S9  ( 194) 1279 306.5 1.8e-83
NP_001308630 (OMIM: 603631) 40S ribosomal protein  ( 194) 1279 306.5 1.8e-83
NP_001308631 (OMIM: 603631) 40S ribosomal protein  ( 194) 1279 306.5 1.8e-83
NP_001308634 (OMIM: 603631) 40S ribosomal protein  ( 153)  791 192.6 2.7e-49
XP_016882601 (OMIM: 603631) PREDICTED: 40S ribosom (  79)  502 125.1 2.9e-29
NP_001308635 (OMIM: 603631) 40S ribosomal protein  (  79)  502 125.1 2.9e-29
NP_060755 (OMIM: 612980) U3 small nucleolar ribonu ( 184)  195 53.6 2.2e-07


>>NP_001308633 (OMIM: 603631) 40S ribosomal protein S9 i  (194 aa)
 initn: 1279 init1: 1279 opt: 1279  Z-score: 1619.6  bits: 306.5 E(85289): 1.8e-83
Smith-Waterman score: 1279; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)

               10        20        30        40        50        60
pF1KB6 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
              130       140       150       160       170       180

              190    
pF1KB6 GQGGAGAGDDEEED
       ::::::::::::::
NP_001 GQGGAGAGDDEEED
              190    

>>NP_001004 (OMIM: 603631) 40S ribosomal protein S9 isof  (194 aa)
 initn: 1279 init1: 1279 opt: 1279  Z-score: 1619.6  bits: 306.5 E(85289): 1.8e-83
Smith-Waterman score: 1279; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)

               10        20        30        40        50        60
pF1KB6 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
              130       140       150       160       170       180

              190    
pF1KB6 GQGGAGAGDDEEED
       ::::::::::::::
NP_001 GQGGAGAGDDEEED
              190    

>>NP_001308630 (OMIM: 603631) 40S ribosomal protein S9 i  (194 aa)
 initn: 1279 init1: 1279 opt: 1279  Z-score: 1619.6  bits: 306.5 E(85289): 1.8e-83
Smith-Waterman score: 1279; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)

               10        20        30        40        50        60
pF1KB6 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
              130       140       150       160       170       180

              190    
pF1KB6 GQGGAGAGDDEEED
       ::::::::::::::
NP_001 GQGGAGAGDDEEED
              190    

>>NP_001308631 (OMIM: 603631) 40S ribosomal protein S9 i  (194 aa)
 initn: 1279 init1: 1279 opt: 1279  Z-score: 1619.6  bits: 306.5 E(85289): 1.8e-83
Smith-Waterman score: 1279; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)

               10        20        30        40        50        60
pF1KB6 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
              130       140       150       160       170       180

              190    
pF1KB6 GQGGAGAGDDEEED
       ::::::::::::::
NP_001 GQGGAGAGDDEEED
              190    

>>NP_001308634 (OMIM: 603631) 40S ribosomal protein S9 i  (153 aa)
 initn: 791 init1: 791 opt: 791  Z-score: 1006.1  bits: 192.6 E(85289): 2.7e-49
Smith-Waterman score: 920; 78.9% identity (78.9% similar) in 194 aa overlap (1-194:1-153)

               10        20        30        40        50        60
pF1KB6 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
       :::::::::::::::::::::::::::::::::                           
NP_001 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIG---------------------------
               10        20        30                              

               70        80        90       100       110       120
pF1KB6 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
                     ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 --------------NALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
                          40        50        60        70         

              130       140       150       160       170       180
pF1KB6 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
      80        90       100       110       120       130         

              190    
pF1KB6 GQGGAGAGDDEEED
       ::::::::::::::
NP_001 GQGGAGAGDDEEED
     140       150   

>>XP_016882601 (OMIM: 603631) PREDICTED: 40S ribosomal p  (79 aa)
 initn: 502 init1: 502 opt: 502  Z-score: 646.3  bits: 125.1 E(85289): 2.9e-29
Smith-Waterman score: 502; 98.7% identity (100.0% similar) in 76 aa overlap (1-76:1-76)

               10        20        30        40        50        60
pF1KB6 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
       ::::::::::::::.:                                            
XP_016 LTLDEKDPRRLFEGSASRW                                         
               70                                                  

>>NP_001308635 (OMIM: 603631) 40S ribosomal protein S9 i  (79 aa)
 initn: 502 init1: 502 opt: 502  Z-score: 646.3  bits: 125.1 E(85289): 2.9e-29
Smith-Waterman score: 502; 98.7% identity (100.0% similar) in 76 aa overlap (1-76:1-76)

               10        20        30        40        50        60
pF1KB6 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
       ::::::::::::::.:                                            
NP_001 LTLDEKDPRRLFEGSASRW                                         
               70                                                  

>>NP_060755 (OMIM: 612980) U3 small nucleolar ribonucleo  (184 aa)
 initn: 105 init1: 105 opt: 195  Z-score: 253.5  bits: 53.6 E(85289): 2.2e-07
Smith-Waterman score: 195; 31.2% identity (66.4% similar) in 125 aa overlap (27-149:29-150)

                 10        20        30        40        50        
pF1KB6   MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAR
                                   .::... .: :. ...  : .     .:. ::
NP_060 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR
               10        20        30        40        50        60

       60        70        80         90        100       110      
pF1KB6 ELLTLDEKDPRRLFEGNALLRRLVRIGVLD-EGKMKL-DYILGLKIEDFLERRLQTQVFK
       .:  : :.:  :.  . ::: .:  .:..  .:...: :.. .    .: .::: : ..:
NP_060 RLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTA---SSFCRRRLPTVLLK
               70        80        90       100          110       

        120       130       140       150       160       170      
pF1KB6 LGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRK
       : .:. .. : ....: :.::  .::. :.:.:                           
NP_060 LRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEER
       120       130       140       150       160       170       

        180       190    
pF1KB6 NAKKGQGGAGAGDDEEED
                         
NP_060 DDFDLEA           
       180               




194 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:16:07 2016 done: Sat Nov  5 00:16:07 2016
 Total Scan time:  5.430 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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