Result of FASTA (omim) for pF1KE0134
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0134, 214 aa
  1>>>pF1KE0134 214 - 214 aa - 214 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8060+/-0.000352; mu= 16.4592+/- 0.022
 mean_var=61.5132+/-12.766, 0's: 0 Z-trim(114.1): 7  B-trim: 1190 in 1/50
 Lambda= 0.163527
 statistics sampled from 23747 (23754) to 23747 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.279), width:  16
 Scan time:  4.820

The best scores are:                                      opt bits E(85289)
NP_006004 (OMIM: 300847,312173) 60S ribosomal prot ( 214) 1494 360.7 1.1e-99
NP_001290553 (OMIM: 300847,312173) 60S ribosomal p ( 214) 1494 360.7 1.1e-99
NP_001290554 (OMIM: 300847,312173) 60S ribosomal p ( 214) 1494 360.7 1.1e-99
NP_001243509 (OMIM: 300847,312173) 60S ribosomal p ( 178) 1037 252.8 2.6e-67
NP_001243506 (OMIM: 300847,312173) 60S ribosomal p ( 216)  789 194.3 1.2e-49
NP_001290555 (OMIM: 300847,312173) 60S ribosomal p ( 145)  785 193.3 1.7e-49


>>NP_006004 (OMIM: 300847,312173) 60S ribosomal protein   (214 aa)
 initn: 1494 init1: 1494 opt: 1494  Z-score: 1911.0  bits: 360.7 E(85289): 1.1e-99
Smith-Waterman score: 1494; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
              130       140       150       160       170       180

              190       200       210    
pF1KE0 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
       ::::::::::::::::::::::::::::::::::
NP_006 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
              190       200       210    

>>NP_001290553 (OMIM: 300847,312173) 60S ribosomal prote  (214 aa)
 initn: 1494 init1: 1494 opt: 1494  Z-score: 1911.0  bits: 360.7 E(85289): 1.1e-99
Smith-Waterman score: 1494; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
              130       140       150       160       170       180

              190       200       210    
pF1KE0 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
       ::::::::::::::::::::::::::::::::::
NP_001 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
              190       200       210    

>>NP_001290554 (OMIM: 300847,312173) 60S ribosomal prote  (214 aa)
 initn: 1494 init1: 1494 opt: 1494  Z-score: 1911.0  bits: 360.7 E(85289): 1.1e-99
Smith-Waterman score: 1494; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
              130       140       150       160       170       180

              190       200       210    
pF1KE0 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
       ::::::::::::::::::::::::::::::::::
NP_001 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
              190       200       210    

>>NP_001243509 (OMIM: 300847,312173) 60S ribosomal prote  (178 aa)
 initn: 1239 init1: 1037 opt: 1037  Z-score: 1329.4  bits: 252.8 E(85289): 2.6e-67
Smith-Waterman score: 1171; 83.2% identity (83.2% similar) in 214 aa overlap (1-214:1-178)

               10        20        30        40        50        60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
       :::::::::::::::::::::::::::                                 
NP_001 MGRRPARCYRYCKNKPYPKSRFCRGVP---------------------------------
               10        20                                        

               70        80        90       100       110       120
pF1KE0 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ---ALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
           30        40        50        60        70        80    

              130       140       150       160       170       180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
           90       100       110       120       130       140    

              190       200       210    
pF1KE0 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
       ::::::::::::::::::::::::::::::::::
NP_001 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
          150       160       170        

>>NP_001243506 (OMIM: 300847,312173) 60S ribosomal prote  (216 aa)
 initn: 789 init1: 789 opt: 789  Z-score: 1012.0  bits: 194.3 E(85289): 1.2e-49
Smith-Waterman score: 789; 94.9% identity (95.8% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::  .   ::  
NP_001 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRSTSQRSGASP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
                                                                   
NP_001 SSMLMNLKTWWLKSGSSQMAVGSSTSPVVALWTSGGPCTHEGFQCAAPLLILTNKFYFLS
              130       140       150       160       170       180

>>NP_001290555 (OMIM: 300847,312173) 60S ribosomal prote  (145 aa)
 initn: 783 init1: 783 opt: 785  Z-score: 1009.4  bits: 193.3 E(85289): 1.7e-49
Smith-Waterman score: 785; 90.5% identity (92.9% similar) in 126 aa overlap (1-125:1-126)

               10        20        30        40        50        60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::    .  : :
NP_001 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRHARCLWKAPG
               70        80        90       100       110       120

               130       140       150       160       170         
pF1KE0 K-PQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNAD
       .  ::.                                                      
NP_001 HCGQGSHWPSYHVHPHQAAEQGACD                                   
              130       140                                        




214 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:12:43 2016 done: Fri Nov  4 01:12:43 2016
 Total Scan time:  4.820 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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