FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8913, 253 aa
  1>>>pF1KB8913 253 - 253 aa - 253 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8487+/-0.000396; mu= 13.1799+/- 0.024
 mean_var=127.6057+/-28.493, 0's: 0 Z-trim(114.6): 41  B-trim: 1436 in 1/51
 Lambda= 0.113537
 statistics sampled from 24488 (24520) to 24488 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.287), width:  16
 Scan time:  6.280

The best scores are:                                      opt bits E(85289)
NP_291028 (OMIM: 608679) TP53-regulating kinase [H ( 253) 1616 275.8   5e-74


>>NP_291028 (OMIM: 608679) TP53-regulating kinase [Homo   (253 aa)
 initn: 1616 init1: 1616 opt: 1616  Z-score: 1450.0  bits: 275.8 E(85289): 5e-74
Smith-Waterman score: 1616; 100.0% identity (100.0% similar) in 253 aa overlap (1-253:1-253)

               10        20        30        40        50        60
pF1KB8 MAAARATTPADGEEPAPEAEALAAARERSSRFLSGLELVKQGAEARVFRGRFQGRAAVIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_291 MAAARATTPADGEEPAPEAEALAAARERSSRFLSGLELVKQGAEARVFRGRFQGRAAVIK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HRFPKGYRHPALEARLGRRRTVQEARALLRCRRAGISAPVVFFVDYASNCLYMEEIEGSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_291 HRFPKGYRHPALEARLGRRRTVQEARALLRCRRAGISAPVVFFVDYASNCLYMEEIEGSV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 TVRDYIQSTMETEKTPQGLSNLAKTIGQVLARMHDEDLIHGDLTTSNMLLKPPLEQLNIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_291 TVRDYIQSTMETEKTPQGLSNLAKTIGQVLARMHDEDLIHGDLTTSNMLLKPPLEQLNIV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LIDFGLSFISALPEDKGVDLYVLEKAFLSTHPNTETVFEAFLKSYSTSSKKARPVLKKLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_291 LIDFGLSFISALPEDKGVDLYVLEKAFLSTHPNTETVFEAFLKSYSTSSKKARPVLKKLD
              190       200       210       220       230       240

              250   
pF1KB8 EVRLRGRKRSMVG
       :::::::::::::
NP_291 EVRLRGRKRSMVG
              250   




253 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:01:03 2016 done: Sat Nov  5 20:01:04 2016
 Total Scan time:  6.280 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]