Result of FASTA (ccds) for pF1KB6385
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6385, 273 aa
  1>>>pF1KB6385 273 - 273 aa - 273 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3631+/-0.000824; mu= 14.2197+/- 0.049
 mean_var=60.2127+/-12.075, 0's: 0 Z-trim(106.1): 35  B-trim: 0 in 0/51
 Lambda= 0.165284
 statistics sampled from 8762 (8797) to 8762 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.27), width:  16
 Scan time:  2.070

The best scores are:                                      opt bits E(32554)
CCDS10853.1 PSMB10 gene_id:5699|Hs108|chr16        ( 273) 1764 429.0 1.8e-120
CCDS6855.1 PSMB7 gene_id:5695|Hs108|chr9           ( 277) 1086 267.3 8.4e-72
CCDS4759.1 PSMB9 gene_id:5698|Hs108|chr6           ( 219)  335 88.2 5.5e-18
CCDS11056.1 PSMB6 gene_id:5694|Hs108|chr17         ( 239)  328 86.5 1.9e-17
CCDS73944.1 PSMB6 gene_id:5694|Hs108|chr17         ( 213)  296 78.9 3.4e-15
CCDS4757.1 PSMB8 gene_id:5696|Hs108|chr6           ( 276)  288 77.0 1.6e-14
CCDS4756.1 PSMB8 gene_id:5696|Hs108|chr6           ( 272)  285 76.3 2.6e-14
CCDS9584.1 PSMB5 gene_id:5693|Hs108|chr14          ( 263)  280 75.1 5.8e-14
CCDS41923.1 PSMB11 gene_id:122706|Hs108|chr14      ( 300)  277 74.4 1.1e-13


>>CCDS10853.1 PSMB10 gene_id:5699|Hs108|chr16             (273 aa)
 initn: 1764 init1: 1764 opt: 1764  Z-score: 2276.4  bits: 429.0 E(32554): 1.8e-120
Smith-Waterman score: 1764; 100.0% identity (100.0% similar) in 273 aa overlap (1-273:1-273)

               10        20        30        40        50        60
pF1KB6 MLKPALEPRGGFSFENCQRNASLERVLPGLKVPHARKTGTTIAGLVFQDGVILGADTRAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLKPALEPRGGFSFENCQRNASLERVLPGLKVPHARKTGTTIAGLVFQDGVILGADTRAT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 NDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ILRQTLFRYQGHVGASLIVGGVDLTGPQLYGVHPHGSYSRLPFTALGSGQDAALAVLEDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ILRQTLFRYQGHVGASLIVGGVDLTGPQLYGVHPHGSYSRLPFTALGSGQDAALAVLEDR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 FQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTLSSPTEPVKRSGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTLSSPTEPVKRSGR
              190       200       210       220       230       240

              250       260       270   
pF1KB6 YHFVPGTTAVLTQTVKPLTLELVEETVQAMEVE
       :::::::::::::::::::::::::::::::::
CCDS10 YHFVPGTTAVLTQTVKPLTLELVEETVQAMEVE
              250       260       270   

>>CCDS6855.1 PSMB7 gene_id:5695|Hs108|chr9                (277 aa)
 initn: 1116 init1: 987 opt: 1086  Z-score: 1402.5  bits: 267.3 E(32554): 8.4e-72
Smith-Waterman score: 1086; 58.3% identity (86.5% similar) in 266 aa overlap (8-271:10-275)

                 10        20          30        40        50      
pF1KB6   MLKPALEPRGGFSFENCQRNASLERVLP--GLKVPHARKTGTTIAGLVFQDGVILGAD
                : :::::.::.::: ::  .   : :.:..:::::::::.:..::..::::
CCDS68 MAAVSVYAPPVGGFSFDNCRRNAVLEADFAKRGYKLPKVRKTGTTIAGVVYKDGIVLGAD
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB6 TRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVA
       ::::.  :::::.: :::::.:.:::::::.:::..:::....:..:::.::::: :::.
CCDS68 TRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVV
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KB6 TVTRILRQTLFRYQGHVGASLIVGGVDLTGPQLYGVHPHGSYSRLPFTALGSGQDAALAV
       :..:.:.: ::::::..::.:..::::.:::.::...:::: ..::....:::. ::.::
CCDS68 TANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAV
              130       140       150       160       170       180

        180       190       200       210       220       230      
pF1KB6 LEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTLSSPTEPVK
       .::.:.:.:  : :..:. ::..:::..:::::.:.: :::.:.   .::  . :..   
CCDS68 FEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGT
              190       200       210       220       230       240

        240       250       260       270   
pF1KB6 RSGRYHFVPGTTAVLTQTVKPLTLELVEETVQAMEVE
       : :::.   :::::::. . :: .:..:::::.:.  
CCDS68 RLGRYRCEKGTTAVLTEKITPLEIEVLEETVQTMDTS
              250       260       270       

>>CCDS4759.1 PSMB9 gene_id:5698|Hs108|chr6                (219 aa)
 initn: 306 init1: 306 opt: 335  Z-score: 436.3  bits: 88.2 E(32554): 5.5e-18
Smith-Waterman score: 335; 30.5% identity (64.5% similar) in 197 aa overlap (28-221:7-202)

               10        20        30          40        50        
pF1KB6 MLKPALEPRGGFSFENCQRNASLERVLPGLKVPHARK--TGTTIAGLVFQDGVILGADTR
                                  :   .:.: .  ::::: .. :. ::..:.:.:
CCDS47                      MLRAGAPTGDLPRAGEVHTGTTIMAVEFDGGVVMGSDSR
                                    10        20        30         

       60        70        80        90       100       110        
pF1KB6 ATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATV
       ..   .:...  .:.  .  .:::  .: ::::. .. :.: ..:::..   . : : ..
CCDS47 VSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAA
      40        50        60        70        80        90         

      120       130       140        150       160       170       
pF1KB6 TRILRQTLFRYQGHVGASLIVGGVDLT-GPQLYGVHPHGSYSRLPFTALGSGQDAALAVL
       . ..:.  ..:.  ..: :.:.: :   : :.::.   :  .: ::.  :::.    . .
CCDS47 ANVVRNISYKYREDLSAHLMVAGWDQREGGQVYGTLG-GMLTRQPFAIGGSGSTFIYGYV
     100       110       120       130        140       150        

       180       190       200       210       220       230       
pF1KB6 EDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTLSSPTEPVKR
       .  ..:.:. :  . . ..:.. ..  : .::: .   .:: .:                
CCDS47 DAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYD
      160       170       180       190       200       210        

       240       250       260       270   
pF1KB6 SGRYHFVPGTTAVLTQTVKPLTLELVEETVQAMEVE
                                           
CCDS47 E                                   
                                           

>>CCDS11056.1 PSMB6 gene_id:5694|Hs108|chr17              (239 aa)
 initn: 286 init1: 245 opt: 328  Z-score: 426.7  bits: 86.5 E(32554): 1.9e-17
Smith-Waterman score: 328; 29.9% identity (65.8% similar) in 187 aa overlap (38-223:33-219)

        10        20        30        40        50        60       
pF1KB6 PRGGFSFENCQRNASLERVLPGLKVPHARKTGTTIAGLVFQDGVILGADTRATNDSVVAD
                                     ::::: .. :. ::.::::.:.:. : .:.
CCDS11 ATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIAN
             10        20        30        40        50        60  

        70        80        90       100       110       120       
pF1KB6 KSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTRILRQTLF
       .  .:.  :  .:.:: .: :::.. ..  :. .. .:..  .. : : :.. ....  .
CCDS11 RVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCY
             70        80        90       100       110       120  

       130       140        150       160       170       180      
pF1KB6 RYQGHVGASLIVGGVD-LTGPQLYGVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMT
       ::.  . :..:..: :   : :.:.:   : . :  :.  :::..   . ..  .. .::
CCDS11 RYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMT
            130       140       150       160       170       180  

        190       200       210       220       230       240      
pF1KB6 LEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTLSSPTEPVKRSGRYHFVPG
        :    . ..:.. ..  : .::: .   .:...:..                       
CCDS11 KEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVATLPPA   
            190       200       210       220       230            

        250       260       270   
pF1KB6 TTAVLTQTVKPLTLELVEETVQAMEVE

>>CCDS73944.1 PSMB6 gene_id:5694|Hs108|chr17              (213 aa)
 initn: 243 init1: 222 opt: 296  Z-score: 386.3  bits: 78.9 E(32554): 3.4e-15
Smith-Waterman score: 296; 32.2% identity (66.4% similar) in 152 aa overlap (38-188:33-184)

        10        20        30        40        50        60       
pF1KB6 PRGGFSFENCQRNASLERVLPGLKVPHARKTGTTIAGLVFQDGVILGADTRATNDSVVAD
                                     ::::: .. :. ::.::::.:.:. : .:.
CCDS73 ATLLAARGAGPAPAWGPEAFTPDWESREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIAN
             10        20        30        40        50        60  

        70        80        90       100       110       120       
pF1KB6 KSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTRILRQTLF
       .  .:.  :  .:.:: .: :::.. ..  :. .. .:..  .. : : :.. ....  .
CCDS73 RVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCY
             70        80        90       100       110       120  

       130       140        150       160       170       180      
pF1KB6 RYQGHVGASLIVGGVD-LTGPQLYGVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMT
       ::.  . :..:..: :   : :.:.:   : . :  :.  :::..   . ..  .. .::
CCDS73 RYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMT
            130       140       150       160       170       180  

        190       200       210       220       230       240      
pF1KB6 LEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTLSSPTEPVKRSGRYHFVPG
        :                                                          
CCDS73 KEECLQFTANAFFFYPQLSLWPWSGMAPVEE                             
            190       200       210                                

>>CCDS4757.1 PSMB8 gene_id:5696|Hs108|chr6                (276 aa)
 initn: 269 init1: 162 opt: 288  Z-score: 374.2  bits: 77.0 E(32554): 1.6e-14
Smith-Waterman score: 288; 29.8% identity (58.2% similar) in 225 aa overlap (1-221:37-255)

                                              10         20        
pF1KB6                               MLKPALE-PRGGFSFENCQR-NASLERVLP
                                     : .: :  :::    :  :  ... :: . 
CCDS47 CGAPRGQRPESALPVAGSGRRSDPGHYSFSMRSPELALPRGMQPTEFFQSLGGDGERNVQ
         10        20        30        40        50        60      

       30        40        50        60        70        80        
pF1KB6 GLKVPHARKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVA
        ... :    :::  .. :: ::: ..:.::.  : ..    .:.  : : .    .: :
CCDS47 -IEMAH----GTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCA
          70            80        90       100       110       120 

       90       100       110       120       130         140      
pF1KB6 ADAEMTTRMVASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASL--IVGGVDLTG
       :: ..  :..:.. .:. : .:..  :......: . . .:.: .: :.  .. : :  :
CCDS47 ADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRG-MGLSMGSMICGWDKKG
             130       140       150       160        170       180

        150       160       170       180       190       200      
pF1KB6 PQLYGVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGILGDL
       : :: :  ::.     . . :::.  : .:... ..::.. : :  :  .:.. .   : 
CCDS47 PGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDS
              190       200       210       220       230       240

        210       220       230       240       250       260      
pF1KB6 GSGGNVDACVITKTGAKLLRTLSSPTEPVKRSGRYHFVPGTTAVLTQTVKPLTLELVEET
        ::: :.   . . :                                             
CCDS47 YSGGVVNMYHMKEDGWVKVESTDVSDLLHQYREANQ                        
              250       260       270                              

>>CCDS4756.1 PSMB8 gene_id:5696|Hs108|chr6                (272 aa)
 initn: 269 init1: 162 opt: 285  Z-score: 370.4  bits: 76.3 E(32554): 2.6e-14
Smith-Waterman score: 287; 29.3% identity (58.1% similar) in 222 aa overlap (4-221:42-251)

                                          10          20        30 
pF1KB6                            MLKPALEPRGGFSFE--NCQRNASLERVLPGLK
                                     :.:::   :.    . .::...:       
CCDS47 TPSSWLTSSLLVEAAPLDDTTLPTPVSSGCPGLEPTEFFQSLGGDGERNVQIE-------
              20        30        40        50        60           

              40        50        60        70        80        90 
pF1KB6 VPHARKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADA
       . :    :::  .. :: ::: ..:.::.  : ..    .:.  : : .    .: ::: 
CCDS47 MAH----GTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADC
               70        80        90       100       110       120

             100       110       120       130         140         
pF1KB6 EMTTRMVASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASL--IVGGVDLTGPQL
       ..  :..:.. .:. : .:..  :......: . . .:.: .: :.  .. : :  :: :
CCDS47 QYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRG-MGLSMGSMICGWDKKGPGL
              130       140       150       160        170         

     150       160       170       180       190       200         
pF1KB6 YGVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSG
       : :  ::.     . . :::.  : .:... ..::.. : :  :  .:.. .   :  ::
CCDS47 YYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSG
     180       190       200       210       220       230         

     210       220       230       240       250       260         
pF1KB6 GNVDACVITKTGAKLLRTLSSPTEPVKRSGRYHFVPGTTAVLTQTVKPLTLELVEETVQA
       : :.   . . :                                                
CCDS47 GVVNMYHMKEDGWVKVESTDVSDLLHQYREANQ                           
     240       250       260       270                             

>>CCDS9584.1 PSMB5 gene_id:5693|Hs108|chr14               (263 aa)
 initn: 267 init1: 172 opt: 280  Z-score: 364.2  bits: 75.1 E(32554): 5.8e-14
Smith-Waterman score: 280; 29.1% identity (59.7% similar) in 196 aa overlap (28-221:52-242)

                  10        20        30        40        50       
pF1KB6    MLKPALEPRGGFSFENCQRNASLERVLPGLKVPHARKTGTTIAGLVFQDGVILGADT
                                     ::... :    :::  .. :. :::..::.
CCDS95 GGRADLLDLGPGSLSDGLSLAAPGWGVPEEPGIEMLH----GTTTLAFKFRHGVIVAADS
              30        40        50            60        70       

        60        70        80        90       100       110       
pF1KB6 RATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVAT
       :::  . .:... .:.  : : .    :: :::  .  :..: . ... : . ..  ::.
CCDS95 RATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAA
        80        90       100       110       120       130       

       120       130         140       150       160       170     
pF1KB6 VTRILRQTLFRYQGHVGASL--IVGGVDLTGPQLYGVHPHGSYSRLPFTALGSGQDAALA
       ....: . ...:.: .: :.  .. : :  :: :: :  .:.       ..:::.  : .
CCDS95 ASKLLANMVYQYKG-MGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYG
       140       150        160       170       180       190      

         180       190       200       210       220       230     
pF1KB6 VLEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGAKLLRTLSSPTEPV
       :..  .. .. .: :  :  .:.  .   :  ::: :.   . . :              
CCDS95 VMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHE
        200       210       220       230       240       250      

         240       250       260       270   
pF1KB6 KRSGRYHFVPGTTAVLTQTVKPLTLELVEETVQAMEVE
                                             
CCDS95 KYSGSTP                               
        260                                  

>>CCDS41923.1 PSMB11 gene_id:122706|Hs108|chr14           (300 aa)
 initn: 264 init1: 151 opt: 277  Z-score: 359.4  bits: 74.4 E(32554): 1.1e-13
Smith-Waterman score: 277; 28.5% identity (58.8% similar) in 221 aa overlap (4-221:19-232)

                              10         20        30        40    
pF1KB6                MLKPALEPRGGFSF-ENCQRNASLERVLPGLKVPHARKTGTTIAG
                         : :   ::..  ..:. .. :.  . : .. :    :::  .
CCDS41 MALQDVCKWQSPDTQGPSPHLPRAGGWAVPRGCDPQTFLQ--IHGPRLAH----GTTTLA
               10        20        30        40              50    

           50        60         70        80        90       100   
pF1KB6 LVFQDGVILGADTRATNDSVVA-DKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKME
       . :. ::: .::::..  : ::   :: :.  .  ..    .:..::     :..  ...
CCDS41 FRFRHGVIAAADTRSSCGSYVACPASC-KVIPVHQHLLGTTSGTSADCATWYRVLQRELR
           60        70        80         90       100       110   

           110       120       130        140       150       160  
pF1KB6 LHALSTGREPRVATVTRILRQTLFRYQG-HVGASLIVGGVDLTGPQLYGVHPHGSYSRLP
       :. :  :. : ::.....:   . .:.:  . ..  . : : .::.:. :.  :.  .  
CCDS41 LRELREGQLPSVASAAKLLSAMMSQYRGLDLCVATALCGWDRSGPELFYVYSDGTRLQGD
           120       130       140       150       160       170   

            170       180       190       200       210       220  
pF1KB6 FTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACVITKTGA
       . ..:::.  : .::.  .. .:. . : .:   ::. .   :  :::.::   . ..: 
CCDS41 IFSVGSGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATHRDAYSGGSVDLFHVRESGW
           180       190       200       210       220       230   

            230       240       250       260       270            
pF1KB6 KLLRTLSSPTEPVKRSGRYHFVPGTTAVLTQTVKPLTLELVEETVQAMEVE         
                                                                   
CCDS41 EHVSRSDACVLYVELQKLLEPEPEEDASHAHPEPATAHRAAEDRELSVGPGEVTPGDSRM
           240       250       260       270       280       290   




273 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:45:05 2016 done: Fri Nov  4 20:45:06 2016
 Total Scan time:  2.070 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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