Result of FASTA (ccds) for pF1KB6702
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6702, 128 aa
  1>>>pF1KB6702 128 - 128 aa - 128 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8271+/-0.000653; mu= 13.0197+/- 0.039
 mean_var=56.2154+/-10.806, 0's: 0 Z-trim(109.5): 27  B-trim: 3 in 1/51
 Lambda= 0.171059
 statistics sampled from 10935 (10960) to 10935 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.337), width:  16
 Scan time:  1.690

The best scores are:                                      opt bits E(32554)
CCDS3563.1 PPBP gene_id:5473|Hs108|chr4            ( 128)  821 210.0 3.2e-55
CCDS47074.1 CXCL1 gene_id:2919|Hs108|chr4          ( 107)  299 81.2 1.7e-16
CCDS34006.1 CXCL5 gene_id:6374|Hs108|chr4          ( 114)  284 77.5 2.3e-15
CCDS34008.1 CXCL2 gene_id:2920|Hs108|chr4          ( 107)  275 75.2   1e-14
CCDS34007.1 CXCL3 gene_id:2921|Hs108|chr4          ( 107)  264 72.5 6.6e-14
CCDS3562.1 PF4 gene_id:5196|Hs108|chr4             ( 101)  255 70.3 2.9e-13
CCDS3560.1 CXCL6 gene_id:6372|Hs108|chr4           ( 114)  251 69.3 6.4e-13
CCDS3561.1 PF4V1 gene_id:5197|Hs108|chr4           ( 104)  237 65.8 6.5e-12
CCDS34005.1 CXCL8 gene_id:3576|Hs108|chr4          (  99)  221 61.9 9.7e-11


>>CCDS3563.1 PPBP gene_id:5473|Hs108|chr4                 (128 aa)
 initn: 821 init1: 821 opt: 821  Z-score: 1104.9  bits: 210.0 E(32554): 3.2e-55
Smith-Waterman score: 821; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)

               10        20        30        40        50        60
pF1KB6 MSLRLDTTPSCNSARPLHALQVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MSLRLDTTPSCNSARPLHALQVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LRCMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LRCMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKK
               70        80        90       100       110       120

               
pF1KB6 LAGDESAD
       ::::::::
CCDS35 LAGDESAD
               

>>CCDS47074.1 CXCL1 gene_id:2919|Hs108|chr4               (107 aa)
 initn: 350 init1: 296 opt: 299  Z-score: 409.8  bits: 81.2 E(32554): 1.7e-16
Smith-Waterman score: 299; 52.4% identity (81.7% similar) in 82 aa overlap (45-126:26-106)

           20        30        40        50        60        70    
pF1KB6 RPLHALQVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHP
                                     .: :.. .  ... .::::.:..: .::::
CCDS47      MARAALSAAPSNPRLLRVALLLLLLVAAGRRAA-GASVATELRCQCLQTLQGIHP
                    10        20        30         40        50    

           80        90       100       110       120        
pF1KB6 KNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD
       :::::..: . : :: :.:::::::.::: ::.: .: .:::..: : .:.:  
CCDS47 KNIQSVNVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNSDKSN 
           60        70        80        90       100        

>>CCDS34006.1 CXCL5 gene_id:6374|Hs108|chr4               (114 aa)
 initn: 327 init1: 284 opt: 284  Z-score: 389.4  bits: 77.5 E(32554): 2.3e-15
Smith-Waterman score: 284; 56.2% identity (90.6% similar) in 64 aa overlap (60-123:46-109)

      30        40        50        60        70        80         
pF1KB6 LTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHPKNIQSLEVIGKGTHC
                                     ::::.:..::.:.::: :..:.:.. : .:
CCDS34 SSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHPKMISNLQVFAIGPQC
          20        30        40        50        60        70     

      90       100       110       120        
pF1KB6 NQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD
       ..:::.:.::.:..:::::.:: .::..:: : :     
CCDS34 SKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
          80        90       100       110    

>>CCDS34008.1 CXCL2 gene_id:2920|Hs108|chr4               (107 aa)
 initn: 306 init1: 270 opt: 275  Z-score: 377.8  bits: 75.2 E(32554): 1e-14
Smith-Waterman score: 275; 48.8% identity (79.3% similar) in 82 aa overlap (45-126:25-106)

           20        30        40        50        60        70    
pF1KB6 RPLHALQVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHP
                                     :. .....  . : .::::.:..: .::: 
CCDS34       MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHL
                     10        20        30        40        50    

           80        90       100       110       120        
pF1KB6 KNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD
       :::::..: . : :: :.:::::::.:.: ::.: .: .:::..: : . .:  
CCDS34 KNIQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN 
           60        70        80        90       100        

>>CCDS34007.1 CXCL3 gene_id:2921|Hs108|chr4               (107 aa)
 initn: 315 init1: 261 opt: 264  Z-score: 363.1  bits: 72.5 E(32554): 6.6e-14
Smith-Waterman score: 264; 48.1% identity (81.8% similar) in 77 aa overlap (45-121:25-101)

           20        30        40        50        60        70    
pF1KB6 RPLHALQVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHP
                                     :. .....  ... .::::.:..: .::: 
CCDS34       MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHL
                     10        20        30        40        50    

           80        90       100       110       120        
pF1KB6 KNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD
       :::::..: . : :: :.:::::::.:.: ::.: .: ..::..: :       
CCDS34 KNIQSVNVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN 
           60        70        80        90       100        

>>CCDS3562.1 PF4 gene_id:5196|Hs108|chr4                  (101 aa)
 initn: 245 init1: 212 opt: 255  Z-score: 351.5  bits: 70.3 E(32554): 2.9e-13
Smith-Waterman score: 255; 52.9% identity (80.0% similar) in 70 aa overlap (52-121:30-99)

              30        40        50        60        70        80 
pF1KB6 VLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHPKNIQSLE
                                     : ...  ..:.:.:.:::: ..:..: :::
CCDS35  MSSAAGFCASRPGLLFLGLLLLPLVVAFASAEAEEDGDLQCLCVKTTSQVRPRHITSLE
                10        20        30        40        50         

              90       100       110       120        
pF1KB6 VIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD
       ::  : ::  ...:::::.::::::: .::  :::..: :       
CCDS35 VIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES     
      60        70        80        90       100      

>>CCDS3560.1 CXCL6 gene_id:6372|Hs108|chr4                (114 aa)
 initn: 297 init1: 248 opt: 251  Z-score: 345.4  bits: 69.3 E(32554): 6.4e-13
Smith-Waterman score: 256; 40.5% identity (65.3% similar) in 121 aa overlap (7-121:2-107)

               10           20        30           40        50    
pF1KB6 MSLRLDTTPSCNSAR---PLHALQVLLLLSLLLTA---LASSTKGQTKRNLAKGKEESLD
             . ::  .::   :  .: .:: : ::::    :::.  : .             
CCDS35      MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASA--GPV-------------
                    10        20        30          40             

           60        70        80        90       100       110    
pF1KB6 SDLYAELRCMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIK
       : . .:::: :...:  ..::.: .:.:.  : .:..:::.:.::.:...::::.:: .:
CCDS35 SAVLTELRCTCLRVTLRVNPKTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLK
               50        60        70        80        90       100

          120        
pF1KB6 KIVQKKLAGDESAD
       :..:: :       
CCDS35 KVIQKILDSGNKKN
              110    

>>CCDS3561.1 PF4V1 gene_id:5197|Hs108|chr4                (104 aa)
 initn: 209 init1: 196 opt: 237  Z-score: 327.3  bits: 65.8 E(32554): 6.5e-12
Smith-Waterman score: 241; 43.6% identity (70.3% similar) in 101 aa overlap (21-121:15-102)

               10        20        30        40        50        60
pF1KB6 MSLRLDTTPSCNSARPLHALQVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAE
                           : .:.:.:::  .. .        .:... :  :.::   
CCDS35       MSSAARSRLTRATRQEMLFLALLLLPVVVA--------FARAEAEE-DGDL---
                     10        20        30                 40     

               70        80        90       100       110       120
pF1KB6 LRCMCIKTTSGIHPKNIQSLEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKK
        .:.:.:::: ..:..: :::::  : ::  ...:::::.::::::: .:   :::....
CCDS35 -QCLCVKTTSQVRPRHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQALLYKKIIKEH
              50        60        70        80        90       100 

               
pF1KB6 LAGDESAD
       :       
CCDS35 LES     
               

>>CCDS34005.1 CXCL8 gene_id:3576|Hs108|chr4               (99 aa)
 initn: 199 init1: 150 opt: 221  Z-score: 306.3  bits: 61.9 E(32554): 9.7e-11
Smith-Waterman score: 221; 47.8% identity (75.4% similar) in 69 aa overlap (60-127:31-99)

      30        40        50        60        70         80        
pF1KB6 LTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSG-IHPKNIQSLEVIGKGTH
                                     ::::.:::: :  .::: :. :.:: .: :
CCDS34 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH
               10        20        30        40        50        60

       90       100       110       120        
pF1KB6 CNQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD
       : ..:.:. :.:::..::::    ....:.: :   :.. 
CCDS34 CANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS 
               70        80        90          




128 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:26:12 2016 done: Fri Nov  4 23:26:12 2016
 Total Scan time:  1.690 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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