Result of FASTA (omim) for pF1KE0147
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0147, 204 aa
  1>>>pF1KE0147 204 - 204 aa - 204 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8381+/-0.000252; mu= 17.2314+/- 0.016
 mean_var=71.7320+/-14.052, 0's: 0 Z-trim(121.4): 17  B-trim: 0 in 0/57
 Lambda= 0.151432
 statistics sampled from 37888 (37905) to 37888 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.444), width:  16
 Scan time:  6.490

The best scores are:                                      opt bits E(85289)
XP_016883562 (OMIM: 610666) PREDICTED: neurensin-2 ( 204) 1434 321.2   7e-88
XP_006723693 (OMIM: 610666) PREDICTED: neurensin-2 ( 204) 1434 321.2   7e-88
XP_016883563 (OMIM: 610666) PREDICTED: neurensin-2 ( 204) 1434 321.2   7e-88
XP_016883564 (OMIM: 610666) PREDICTED: neurensin-2 ( 204) 1434 321.2   7e-88
NP_001310611 (OMIM: 610666) neurensin-2 isoform 1  ( 204) 1434 321.2   7e-88
XP_011527664 (OMIM: 610666) PREDICTED: neurensin-2 ( 204) 1434 321.2   7e-88
XP_011527665 (OMIM: 610666) PREDICTED: neurensin-2 ( 204) 1434 321.2   7e-88
NP_001310612 (OMIM: 610666) neurensin-2 isoform 1  ( 204) 1434 321.2   7e-88
NP_079234 (OMIM: 610666) neurensin-2 isoform 1 [Ho ( 204) 1434 321.2   7e-88
NP_001310610 (OMIM: 610666) neurensin-2 isoform 1  ( 204) 1434 321.2   7e-88
NP_001310609 (OMIM: 610666) neurensin-2 isoform 1  ( 204) 1434 321.2   7e-88
NP_001310614 (OMIM: 610666) neurensin-2 isoform 1  ( 204) 1434 321.2   7e-88
NP_001310613 (OMIM: 610666) neurensin-2 isoform 1  ( 204) 1434 321.2   7e-88
XP_011527662 (OMIM: 610666) PREDICTED: neurensin-2 ( 204) 1434 321.2   7e-88
NP_001310608 (OMIM: 610666) neurensin-2 isoform 2  ( 160)  697 160.1 1.7e-39
XP_016883565 (OMIM: 610666) PREDICTED: neurensin-2 ( 157)  500 117.1 1.5e-26
NP_542454 (OMIM: 616630) neurensin-1 [Homo sapiens ( 195)  354 85.3 7.2e-17


>>XP_016883562 (OMIM: 610666) PREDICTED: neurensin-2 iso  (204 aa)
 initn: 1434 init1: 1434 opt: 1434  Z-score: 1698.7  bits: 321.2 E(85289): 7e-88
Smith-Waterman score: 1434; 99.5% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KE0 MMPSCNRSCSCSRGPSVEDGKWYGVRSYLHLFYEDCAGTALSDDPEGPPVLCPRRPWPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MMPSCNRSCSCSRGPSVEDGKWYGVRSYLHLFYEDCAGTALSDDPEGPPVLCPRRPWPSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CWKISLSSGTLLLLLGVAALTTGYAVPPKLEGIGEGEFLVLDQRTADYNQALGTCRLAGT
       ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
XP_016 CWKISLSSGTLLLLLGVAALTTGYAVPPKLEGIGEGEFLVLDQRAADYNQALGTCRLAGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ALCVAAGVLLAICLFWAMIGWLSQDTKAEPLDPEADSHVEVFGDEPEQQLSPIFRNASGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALCVAAGVLLAICLFWAMIGWLSQDTKAEPLDPEADSHVEVFGDEPEQQLSPIFRNASGQ
              130       140       150       160       170       180

              190       200    
pF1KE0 SWFSPPASPFGQSSVQTIQPKRDS
       ::::::::::::::::::::::::
XP_016 SWFSPPASPFGQSSVQTIQPKRDS
              190       200    

>>XP_006723693 (OMIM: 610666) PREDICTED: neurensin-2 iso  (204 aa)
 initn: 1434 init1: 1434 opt: 1434  Z-score: 1698.7  bits: 321.2 E(85289): 7e-88
Smith-Waterman score: 1434; 99.5% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KE0 MMPSCNRSCSCSRGPSVEDGKWYGVRSYLHLFYEDCAGTALSDDPEGPPVLCPRRPWPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MMPSCNRSCSCSRGPSVEDGKWYGVRSYLHLFYEDCAGTALSDDPEGPPVLCPRRPWPSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CWKISLSSGTLLLLLGVAALTTGYAVPPKLEGIGEGEFLVLDQRTADYNQALGTCRLAGT
       ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
XP_006 CWKISLSSGTLLLLLGVAALTTGYAVPPKLEGIGEGEFLVLDQRAADYNQALGTCRLAGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ALCVAAGVLLAICLFWAMIGWLSQDTKAEPLDPEADSHVEVFGDEPEQQLSPIFRNASGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ALCVAAGVLLAICLFWAMIGWLSQDTKAEPLDPEADSHVEVFGDEPEQQLSPIFRNASGQ
              130       140       150       160       170       180

              190       200    
pF1KE0 SWFSPPASPFGQSSVQTIQPKRDS
       ::::::::::::::::::::::::
XP_006 SWFSPPASPFGQSSVQTIQPKRDS
              190       200    

>>XP_016883563 (OMIM: 610666) PREDICTED: neurensin-2 iso  (204 aa)
 initn: 1434 init1: 1434 opt: 1434  Z-score: 1698.7  bits: 321.2 E(85289): 7e-88
Smith-Waterman score: 1434; 99.5% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KE0 MMPSCNRSCSCSRGPSVEDGKWYGVRSYLHLFYEDCAGTALSDDPEGPPVLCPRRPWPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MMPSCNRSCSCSRGPSVEDGKWYGVRSYLHLFYEDCAGTALSDDPEGPPVLCPRRPWPSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CWKISLSSGTLLLLLGVAALTTGYAVPPKLEGIGEGEFLVLDQRTADYNQALGTCRLAGT
       ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
XP_016 CWKISLSSGTLLLLLGVAALTTGYAVPPKLEGIGEGEFLVLDQRAADYNQALGTCRLAGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ALCVAAGVLLAICLFWAMIGWLSQDTKAEPLDPEADSHVEVFGDEPEQQLSPIFRNASGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALCVAAGVLLAICLFWAMIGWLSQDTKAEPLDPEADSHVEVFGDEPEQQLSPIFRNASGQ
              130       140       150       160       170       180

              190       200    
pF1KE0 SWFSPPASPFGQSSVQTIQPKRDS
       ::::::::::::::::::::::::
XP_016 SWFSPPASPFGQSSVQTIQPKRDS
              190       200    

>>XP_016883564 (OMIM: 610666) PREDICTED: neurensin-2 iso  (204 aa)
 initn: 1434 init1: 1434 opt: 1434  Z-score: 1698.7  bits: 321.2 E(85289): 7e-88
Smith-Waterman score: 1434; 99.5% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KE0 MMPSCNRSCSCSRGPSVEDGKWYGVRSYLHLFYEDCAGTALSDDPEGPPVLCPRRPWPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MMPSCNRSCSCSRGPSVEDGKWYGVRSYLHLFYEDCAGTALSDDPEGPPVLCPRRPWPSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CWKISLSSGTLLLLLGVAALTTGYAVPPKLEGIGEGEFLVLDQRTADYNQALGTCRLAGT
       ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
XP_016 CWKISLSSGTLLLLLGVAALTTGYAVPPKLEGIGEGEFLVLDQRAADYNQALGTCRLAGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ALCVAAGVLLAICLFWAMIGWLSQDTKAEPLDPEADSHVEVFGDEPEQQLSPIFRNASGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALCVAAGVLLAICLFWAMIGWLSQDTKAEPLDPEADSHVEVFGDEPEQQLSPIFRNASGQ
              130       140       150       160       170       180

              190       200    
pF1KE0 SWFSPPASPFGQSSVQTIQPKRDS
       ::::::::::::::::::::::::
XP_016 SWFSPPASPFGQSSVQTIQPKRDS
              190       200    

>>NP_001310611 (OMIM: 610666) neurensin-2 isoform 1 [Hom  (204 aa)
 initn: 1434 init1: 1434 opt: 1434  Z-score: 1698.7  bits: 321.2 E(85289): 7e-88
Smith-Waterman score: 1434; 99.5% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KE0 MMPSCNRSCSCSRGPSVEDGKWYGVRSYLHLFYEDCAGTALSDDPEGPPVLCPRRPWPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMPSCNRSCSCSRGPSVEDGKWYGVRSYLHLFYEDCAGTALSDDPEGPPVLCPRRPWPSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CWKISLSSGTLLLLLGVAALTTGYAVPPKLEGIGEGEFLVLDQRTADYNQALGTCRLAGT
       ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
NP_001 CWKISLSSGTLLLLLGVAALTTGYAVPPKLEGIGEGEFLVLDQRAADYNQALGTCRLAGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ALCVAAGVLLAICLFWAMIGWLSQDTKAEPLDPEADSHVEVFGDEPEQQLSPIFRNASGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALCVAAGVLLAICLFWAMIGWLSQDTKAEPLDPEADSHVEVFGDEPEQQLSPIFRNASGQ
              130       140       150       160       170       180

              190       200    
pF1KE0 SWFSPPASPFGQSSVQTIQPKRDS
       ::::::::::::::::::::::::
NP_001 SWFSPPASPFGQSSVQTIQPKRDS
              190       200    

>>XP_011527664 (OMIM: 610666) PREDICTED: neurensin-2 iso  (204 aa)
 initn: 1434 init1: 1434 opt: 1434  Z-score: 1698.7  bits: 321.2 E(85289): 7e-88
Smith-Waterman score: 1434; 99.5% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KE0 MMPSCNRSCSCSRGPSVEDGKWYGVRSYLHLFYEDCAGTALSDDPEGPPVLCPRRPWPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MMPSCNRSCSCSRGPSVEDGKWYGVRSYLHLFYEDCAGTALSDDPEGPPVLCPRRPWPSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CWKISLSSGTLLLLLGVAALTTGYAVPPKLEGIGEGEFLVLDQRTADYNQALGTCRLAGT
       ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
XP_011 CWKISLSSGTLLLLLGVAALTTGYAVPPKLEGIGEGEFLVLDQRAADYNQALGTCRLAGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ALCVAAGVLLAICLFWAMIGWLSQDTKAEPLDPEADSHVEVFGDEPEQQLSPIFRNASGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALCVAAGVLLAICLFWAMIGWLSQDTKAEPLDPEADSHVEVFGDEPEQQLSPIFRNASGQ
              130       140       150       160       170       180

              190       200    
pF1KE0 SWFSPPASPFGQSSVQTIQPKRDS
       ::::::::::::::::::::::::
XP_011 SWFSPPASPFGQSSVQTIQPKRDS
              190       200    

>>XP_011527665 (OMIM: 610666) PREDICTED: neurensin-2 iso  (204 aa)
 initn: 1434 init1: 1434 opt: 1434  Z-score: 1698.7  bits: 321.2 E(85289): 7e-88
Smith-Waterman score: 1434; 99.5% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KE0 MMPSCNRSCSCSRGPSVEDGKWYGVRSYLHLFYEDCAGTALSDDPEGPPVLCPRRPWPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MMPSCNRSCSCSRGPSVEDGKWYGVRSYLHLFYEDCAGTALSDDPEGPPVLCPRRPWPSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CWKISLSSGTLLLLLGVAALTTGYAVPPKLEGIGEGEFLVLDQRTADYNQALGTCRLAGT
       ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
XP_011 CWKISLSSGTLLLLLGVAALTTGYAVPPKLEGIGEGEFLVLDQRAADYNQALGTCRLAGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ALCVAAGVLLAICLFWAMIGWLSQDTKAEPLDPEADSHVEVFGDEPEQQLSPIFRNASGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALCVAAGVLLAICLFWAMIGWLSQDTKAEPLDPEADSHVEVFGDEPEQQLSPIFRNASGQ
              130       140       150       160       170       180

              190       200    
pF1KE0 SWFSPPASPFGQSSVQTIQPKRDS
       ::::::::::::::::::::::::
XP_011 SWFSPPASPFGQSSVQTIQPKRDS
              190       200    

>>NP_001310612 (OMIM: 610666) neurensin-2 isoform 1 [Hom  (204 aa)
 initn: 1434 init1: 1434 opt: 1434  Z-score: 1698.7  bits: 321.2 E(85289): 7e-88
Smith-Waterman score: 1434; 99.5% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KE0 MMPSCNRSCSCSRGPSVEDGKWYGVRSYLHLFYEDCAGTALSDDPEGPPVLCPRRPWPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMPSCNRSCSCSRGPSVEDGKWYGVRSYLHLFYEDCAGTALSDDPEGPPVLCPRRPWPSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CWKISLSSGTLLLLLGVAALTTGYAVPPKLEGIGEGEFLVLDQRTADYNQALGTCRLAGT
       ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
NP_001 CWKISLSSGTLLLLLGVAALTTGYAVPPKLEGIGEGEFLVLDQRAADYNQALGTCRLAGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ALCVAAGVLLAICLFWAMIGWLSQDTKAEPLDPEADSHVEVFGDEPEQQLSPIFRNASGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALCVAAGVLLAICLFWAMIGWLSQDTKAEPLDPEADSHVEVFGDEPEQQLSPIFRNASGQ
              130       140       150       160       170       180

              190       200    
pF1KE0 SWFSPPASPFGQSSVQTIQPKRDS
       ::::::::::::::::::::::::
NP_001 SWFSPPASPFGQSSVQTIQPKRDS
              190       200    

>>NP_079234 (OMIM: 610666) neurensin-2 isoform 1 [Homo s  (204 aa)
 initn: 1434 init1: 1434 opt: 1434  Z-score: 1698.7  bits: 321.2 E(85289): 7e-88
Smith-Waterman score: 1434; 99.5% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KE0 MMPSCNRSCSCSRGPSVEDGKWYGVRSYLHLFYEDCAGTALSDDPEGPPVLCPRRPWPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 MMPSCNRSCSCSRGPSVEDGKWYGVRSYLHLFYEDCAGTALSDDPEGPPVLCPRRPWPSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CWKISLSSGTLLLLLGVAALTTGYAVPPKLEGIGEGEFLVLDQRTADYNQALGTCRLAGT
       ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
NP_079 CWKISLSSGTLLLLLGVAALTTGYAVPPKLEGIGEGEFLVLDQRAADYNQALGTCRLAGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ALCVAAGVLLAICLFWAMIGWLSQDTKAEPLDPEADSHVEVFGDEPEQQLSPIFRNASGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 ALCVAAGVLLAICLFWAMIGWLSQDTKAEPLDPEADSHVEVFGDEPEQQLSPIFRNASGQ
              130       140       150       160       170       180

              190       200    
pF1KE0 SWFSPPASPFGQSSVQTIQPKRDS
       ::::::::::::::::::::::::
NP_079 SWFSPPASPFGQSSVQTIQPKRDS
              190       200    

>>NP_001310610 (OMIM: 610666) neurensin-2 isoform 1 [Hom  (204 aa)
 initn: 1434 init1: 1434 opt: 1434  Z-score: 1698.7  bits: 321.2 E(85289): 7e-88
Smith-Waterman score: 1434; 99.5% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KE0 MMPSCNRSCSCSRGPSVEDGKWYGVRSYLHLFYEDCAGTALSDDPEGPPVLCPRRPWPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMPSCNRSCSCSRGPSVEDGKWYGVRSYLHLFYEDCAGTALSDDPEGPPVLCPRRPWPSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 CWKISLSSGTLLLLLGVAALTTGYAVPPKLEGIGEGEFLVLDQRTADYNQALGTCRLAGT
       ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
NP_001 CWKISLSSGTLLLLLGVAALTTGYAVPPKLEGIGEGEFLVLDQRAADYNQALGTCRLAGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ALCVAAGVLLAICLFWAMIGWLSQDTKAEPLDPEADSHVEVFGDEPEQQLSPIFRNASGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALCVAAGVLLAICLFWAMIGWLSQDTKAEPLDPEADSHVEVFGDEPEQQLSPIFRNASGQ
              130       140       150       160       170       180

              190       200    
pF1KE0 SWFSPPASPFGQSSVQTIQPKRDS
       ::::::::::::::::::::::::
NP_001 SWFSPPASPFGQSSVQTIQPKRDS
              190       200    




204 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:23:32 2016 done: Fri Nov  4 00:23:33 2016
 Total Scan time:  6.490 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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