Result of FASTA (ccds) for pF1KB7807
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7807, 525 aa
  1>>>pF1KB7807 525 - 525 aa - 525 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.2694+/-0.00082; mu= 2.3869+/- 0.050
 mean_var=229.2884+/-46.498, 0's: 0 Z-trim(116.2): 11  B-trim: 0 in 0/53
 Lambda= 0.084700
 statistics sampled from 16771 (16779) to 16771 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.515), width:  16
 Scan time:  3.640

The best scores are:                                      opt bits E(32554)
CCDS8930.1 NAB2 gene_id:4665|Hs108|chr12           ( 525) 3546 445.8 5.7e-125
CCDS81701.1 NAB2 gene_id:4665|Hs108|chr12          ( 461) 2865 362.5 5.8e-100
CCDS82545.1 NAB1 gene_id:4664|Hs108|chr2           ( 486)  617 87.8   3e-17
CCDS2307.1 NAB1 gene_id:4664|Hs108|chr2            ( 487)  617 87.8   3e-17


>>CCDS8930.1 NAB2 gene_id:4665|Hs108|chr12                (525 aa)
 initn: 3546 init1: 3546 opt: 3546  Z-score: 2357.0  bits: 445.8 E(32554): 5.7e-125
Smith-Waterman score: 3546; 100.0% identity (100.0% similar) in 525 aa overlap (1-525:1-525)

               10        20        30        40        50        60
pF1KB7 MHRAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 MHRAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYET
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FIQQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 FIQQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PVSSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSPLELGEKLSPLPGGPGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 PVSSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSPLELGEKLSPLPGGPGAG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 DPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTGGGPDRLEPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 DPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTGGGPDRLEPE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 MVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQKEEEIRKYSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 MVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQKEEEIRKYSI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 IYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVARESTYLSSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 IYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVARESTYLSSL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 KGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEEDSASLSGESL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 KGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEEDSASLSGESL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 DGHLQAVGSCPRLTPPPADLPLALPAHGLWSRHILQQTLMDEGLRLARLVSHDRVGRLSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 DGHLQAVGSCPRLTPPPADLPLALPAHGLWSRHILQQTLMDEGLRLARLVSHDRVGRLSP
              430       440       450       460       470       480

              490       500       510       520     
pF1KB7 CVPAKPPLAEFEEGLLDRCPAPGPHPALVEGRRSSVKVEAEASRQ
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS89 CVPAKPPLAEFEEGLLDRCPAPGPHPALVEGRRSSVKVEAEASRQ
              490       500       510       520     

>>CCDS81701.1 NAB2 gene_id:4665|Hs108|chr12               (461 aa)
 initn: 2849 init1: 2849 opt: 2865  Z-score: 1908.1  bits: 362.5 E(32554): 5.8e-100
Smith-Waterman score: 2956; 87.8% identity (87.8% similar) in 525 aa overlap (1-525:1-461)

               10        20        30        40        50        60
pF1KB7 MHRAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MHRAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYET
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FIQQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 FIQQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PVSSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSPLELGEKLSPLPGGPGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PVSSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSPLELGEKLSPLPGGPGAG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 DPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTGGGPDRLEPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTGGGPDRLEPE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 MVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQKEEEIRKYSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQKEEEIRKYSI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 IYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVARESTYLSSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 IYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVARESTYLSSL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 KGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEEDSASLSGESL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEEDSASLSGESL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 DGHLQAVGSCPRLTPPPADLPLALPAHGLWSRHILQQTLMDEGLRLARLVSHDRVGRLSP
       :::::                                                       
CCDS81 DGHLQ-------------------------------------------------------
                                                                   

              490       500       510       520     
pF1KB7 CVPAKPPLAEFEEGLLDRCPAPGPHPALVEGRRSSVKVEAEASRQ
                ::::::::::::::::::::::::::::::::::::
CCDS81 ---------EFEEGLLDRCPAPGPHPALVEGRRSSVKVEAEASRQ
                  430       440       450       460 

>>CCDS82545.1 NAB1 gene_id:4664|Hs108|chr2                (486 aa)
 initn: 1089 init1: 576 opt: 617  Z-score: 423.2  bits: 87.8 E(32554): 3e-17
Smith-Waterman score: 1072; 51.1% identity (71.1% similar) in 370 aa overlap (33-391:2-342)

             10        20        30        40        50        60  
pF1KB7 RAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYETFI
                                     : :::::::::::::.::.::::::...::
CCDS82                              MAAALPRTLGELQLYRILQKANLLSYFDAFI
                                            10        20        30 

             70        80        90       100       110       120  
pF1KB7 QQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAVPV
       ::::::::::::::::::::::::::::.:::::::::::::.:.::::::.::. ..::
CCDS82 QQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALRDWVTNPGLFNQPLTSLPV
              40        50        60        70        80        90 

            130       140       150       160               170    
pF1KB7 SSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSP--------LELGEKLSPLP
       ::::..:. : . :  :   ...    :....::    : :          ::.  : . 
CCDS82 SSIPIYKLPEGSPTWLGISCSSY----ERSSNAREPHLKIPKCAATTCVQSLGQGKSDVV
             100       110           120       130       140       

             180       190       200       210       220       230 
pF1KB7 GG---PGAGDPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTG
       :.    ..:. :.: :. . ::.  . .  . :::  ::       :.. :   ::. . 
CCDS82 GSLALQSVGESRLWQGHHATESE-HSLSPADLGSPA-SPK------ESSEALDAAAALS-
       150       160       170        180              190         

             240       250       260       270       280       290 
pF1KB7 GGPDRLEPEMVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQK
                    :.: :::.  ..:..: .::  ::: :::::. .::::::.:.: .:
CCDS82 -------------VAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDDDPHK
                   200       210       220       230       240     

             300       310       320       330       340       350 
pF1KB7 EEEIRKYSIIYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVA
       :::::::: :::::::::..::.:.:::::.::::::.:..::.:: :: :::.:.::..
CCDS82 EEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFALARQIS
         250       260       270       280       290       300     

             360       370       380       390       400       410 
pF1KB7 RESTYLSSLKGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEED
       :: ::  . . .. .  :      :..: : :    :..:                    
CCDS82 REVTYKYTYRTTKSKCGERDELSPKRIKVEDG---FPDFQDSVQTLFQQARAKSEELAAL
         310       320       330          340       350       360  

             420       430       440       450       460       470 
pF1KB7 SASLSGESLDGHLQAVGSCPRLTPPPADLPLALPAHGLWSRHILQQTLMDEGLRLARLVS
                                                                   
CCDS82 SSQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDGQGERP
            370       380       390       400       410       420  

>>CCDS2307.1 NAB1 gene_id:4664|Hs108|chr2                 (487 aa)
 initn: 1095 init1: 576 opt: 617  Z-score: 423.2  bits: 87.8 E(32554): 3e-17
Smith-Waterman score: 1072; 51.1% identity (71.1% similar) in 370 aa overlap (33-391:2-342)

             10        20        30        40        50        60  
pF1KB7 RAPSPTAEQPPGGGDSARRTLQPRLKPSARAMALPRTLGELQLYRVLQRANLLSYYETFI
                                     : :::::::::::::.::.::::::...::
CCDS23                              MAAALPRTLGELQLYRILQKANLLSYFDAFI
                                            10        20        30 

             70        80        90       100       110       120  
pF1KB7 QQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHVRRLQKALREWATNPGLFSQPVPAVPV
       ::::::::::::::::::::::::::::.:::::::::::::.:.::::::.::. ..::
CCDS23 QQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALRDWVTNPGLFNQPLTSLPV
              40        50        60        70        80        90 

            130       140       150       160               170    
pF1KB7 SSIPLFKISETAGTRKGSMSNGHGSPGEKAGSARSFSPKSP--------LELGEKLSPLP
       ::::..:. : . :  :   ...    :....::    : :          ::.  : . 
CCDS23 SSIPIYKLPEGSPTWLGISCSSY----ERSSNAREPHLKIPKCAATTCVQSLGQGKSDVV
             100       110           120       130       140       

             180       190       200       210       220       230 
pF1KB7 GG---PGAGDPRIWPGRSTPESDVGAGGEEEAGSPPFSPPAGGGVPEGTGAGGLAAGGTG
       :.    ..:. :.: :. . ::.  . .  . :::  ::       :.. :   ::. . 
CCDS23 GSLALQSVGESRLWQGHHATESE-HSLSPADLGSPA-SPK------ESSEALDAAAALS-
       150       160       170        180              190         

             240       250       260       270       280       290 
pF1KB7 GGPDRLEPEMVRMVVESVERIFRSFPRGDAGEVTSLLKLNKKLARSVGHIFEMDDNDSQK
                    :.: :::.  ..:..: .::  ::: :::::. .::::::.:.: .:
CCDS23 -------------VAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDDDPHK
                   200       210       220       230       240     

             300       310       320       330       340       350 
pF1KB7 EEEIRKYSIIYGRFDSKRREGKQLSLHELTINEAAAQFCMRDNTLLLRRVELFSLSRQVA
       :::::::: :::::::::..::.:.:::::.::::::.:..::.:: :: :::.:.::..
CCDS23 EEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFALARQIS
         250       260       270       280       290       300     

             360       370       380       390       400       410 
pF1KB7 RESTYLSSLKGSRLHPEELGGPPLKKLKQEVGEQSHPEIQQPPPGPESYVPPYRPSLEED
       :: ::  . . .. .  :      :..: : :    :..:                    
CCDS23 REVTYKYTYRTTKSKCGERDELSPKRIKVEDG---FPDFQDSVQTLFQQARAKSEELAAL
         310       320       330          340       350       360  

             420       430       440       450       460       470 
pF1KB7 SASLSGESLDGHLQAVGSCPRLTPPPADLPLALPAHGLWSRHILQQTLMDEGLRLARLVS
                                                                   
CCDS23 SSQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDGQGER
            370       380       390       400       410       420  




525 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:24:27 2016 done: Fri Nov  4 22:24:28 2016
 Total Scan time:  3.640 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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