Result of FASTA (ccds) for pF1KB8877
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8877, 168 aa
  1>>>pF1KB8877 168 - 168 aa - 168 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1885+/-0.00102; mu= 6.7738+/- 0.059
 mean_var=97.1679+/-20.884, 0's: 0 Z-trim(105.9): 236  B-trim: 334 in 2/48
 Lambda= 0.130111
 statistics sampled from 8378 (8669) to 8378 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.663), E-opt: 0.2 (0.266), width:  16
 Scan time:  1.850

The best scores are:                                      opt bits E(32554)
CCDS555.1 CDKN2C gene_id:1031|Hs108|chr1           ( 168) 1092 215.3 1.4e-56
CCDS12244.1 CDKN2D gene_id:1032|Hs108|chr19        ( 166)  437 92.3 1.5e-19
CCDS56565.1 CDKN2A gene_id:1029|Hs108|chr9         ( 167)  314 69.2 1.3e-12
CCDS6510.1 CDKN2A gene_id:1029|Hs108|chr9          ( 156)  311 68.7 1.8e-12
CCDS6512.1 CDKN2B gene_id:1030|Hs108|chr9          ( 138)  298 66.2   9e-12


>>CCDS555.1 CDKN2C gene_id:1031|Hs108|chr1                (168 aa)
 initn: 1092 init1: 1092 opt: 1092  Z-score: 1129.1  bits: 215.3 E(32554): 1.4e-56
Smith-Waterman score: 1092; 100.0% identity (100.0% similar) in 168 aa overlap (1-168:1-168)

               10        20        30        40        50        60
pF1KB8 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE
               70        80        90       100       110       120

              130       140       150       160        
pF1KB8 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ
              130       140       150       160        

>>CCDS12244.1 CDKN2D gene_id:1032|Hs108|chr19             (166 aa)
 initn: 494 init1: 330 opt: 437  Z-score: 464.7  bits: 92.3 E(32554): 1.5e-19
Smith-Waterman score: 437; 45.8% identity (77.4% similar) in 155 aa overlap (6-159:9-161)

                  10        20         30        40        50      
pF1KB8    MAEPWGNELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTALQVMKLGNPEIARRL
               :..:..::::::....  ::. . :. .: : ::.:::::: .:.  :: .:
CCDS12 MLLEEVRAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALEL
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KB8 LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL
       : .::.:...: .: . .:::::.::::::..:.:  ::::. :. : ::.:::..::: 
CCDS12 LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT
               70        80        90       100       110       120

        120       130       140       150       160        
pF1KB8 RVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ
        :: ::. .  :.. .:. .: :  .::   : ...:...:..         
CCDS12 AVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAPL    
                130       140       150       160          

>>CCDS56565.1 CDKN2A gene_id:1029|Hs108|chr9              (167 aa)
 initn: 312 init1: 181 opt: 314  Z-score: 339.9  bits: 69.2 E(32554): 1.3e-12
Smith-Waterman score: 314; 38.1% identity (69.4% similar) in 147 aa overlap (3-148:10-156)

                      10        20        30        40        50   
pF1KB8        MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIA
                :: .. ::.::::: .:.. .::. ..  :: :..::  .::: .:. ..:
CCDS56 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMMGSARVA
               10        20        30        40        50        60

            60        70         80        90       100       110  
pF1KB8 RRLLLRGANPDLKDRTGFAV-IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK
       . :::.::.:.  : . ..  .::::: :::::: .: .  : ....:  : ::. :: .
CCDS56 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE
               70        80        90       100       110       120

            120       130       140       150       160        
pF1KB8 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ
        ::  :...:   .... :  . . :.:   ... :                    
CCDS56 LGHRDVARYLRAAAGGTRGSNHARIDAAEGPSEMIGNHLWVCRSRHA         
              130       140       150       160                

>>CCDS6510.1 CDKN2A gene_id:1029|Hs108|chr9               (156 aa)
 initn: 312 init1: 181 opt: 311  Z-score: 337.2  bits: 68.7 E(32554): 1.8e-12
Smith-Waterman score: 311; 39.6% identity (70.5% similar) in 139 aa overlap (3-140:10-148)

                      10        20        30        40        50   
pF1KB8        MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIA
                :: .. ::.::::: .:.. .::. ..  :: :..::  .::: .:. ..:
CCDS65 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMMGSARVA
               10        20        30        40        50        60

            60        70         80        90       100       110  
pF1KB8 RRLLLRGANPDLKDRTGFAV-IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK
       . :::.::.:.  : . ..  .::::: :::::: .: .  : ....:  : ::. :: .
CCDS65 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE
               70        80        90       100       110       120

            120       130       140       150       160        
pF1KB8 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ
        ::  :...:   .... :  . . :.:                            
CCDS65 LGHRDVARYLRAAAGGTRGSNHARIDAAEGPSDIPD                    
              130       140       150                          

>>CCDS6512.1 CDKN2B gene_id:1030|Hs108|chr9               (138 aa)
 initn: 310 init1: 176 opt: 298  Z-score: 324.8  bits: 66.2 E(32554): 9e-12
Smith-Waterman score: 298; 45.2% identity (73.9% similar) in 115 aa overlap (9-122:18-132)

                        10        20        30        40        50 
pF1KB8          MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPE
                        :::::::: .:.. .::. ... :. : ::: :.::: .:. .
CCDS65 MREENKGMPSGGGSDEGLASAAARGLVEKVRQLLEAGADPNGVNRFGRRAIQVMMMGSAR
               10        20        30        40        50        60

              60        70         80        90       100       110
pF1KB8 IARRLLLRGANPDLKDRTGFAV-IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA
       .:. :::.::.:.  : . ..  .::::: :::::: .: .  : ....:  : ::. ::
CCDS65 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA
               70        80        90       100       110       120

              120       130       140       150       160        
pF1KB8 AKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ
        ..::  :. .:                                              
CCDS65 EERGHRDVAGYLRTATGD                                        
              130                                                




168 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:57:20 2016 done: Sat Nov  5 19:57:20 2016
 Total Scan time:  1.850 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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