Result of FASTA (omim) for
pF1KB8850
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8850, 71 aa
1>>>pF1KB8850 71 - 71 aa - 71 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9145+/-0.000255; mu= 8.7173+/- 0.016
mean_var=46.7801+/- 9.198, 0's: 0 Z-trim(119.5): 76 B-trim: 0 in 0/54
Lambda= 0.187518
statistics sampled from 33544 (33621) to 33544 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.394), width: 16
Scan time: 3.900
The best scores are: opt bits E(85289)
XP_006720236 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 454 129.3 5.2e-31
NP_444292 (OMIM: 606981) guanine nucleotide-bindin ( 71) 454 129.3 5.2e-31
XP_011535148 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 454 129.3 5.2e-31
XP_016876866 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 454 129.3 5.2e-31
XP_016876865 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 454 129.3 5.2e-31
NP_001230702 (OMIM: 606981) guanine nucleotide-bin ( 71) 454 129.3 5.2e-31
NP_001230703 (OMIM: 606981) guanine nucleotide-bin ( 71) 454 129.3 5.2e-31
NP_001092192 (OMIM: 604388) guanine nucleotide-bin ( 75) 381 109.5 4.9e-25
NP_004476 (OMIM: 604388) guanine nucleotide-bindin ( 75) 381 109.5 4.9e-25
XP_011542469 (OMIM: 604388) PREDICTED: guanine nuc ( 75) 381 109.5 4.9e-25
NP_001092191 (OMIM: 604388) guanine nucleotide-bin ( 75) 381 109.5 4.9e-25
XP_006711824 (OMIM: 604388) PREDICTED: guanine nuc ( 75) 381 109.5 4.9e-25
NP_036334 (OMIM: 608941) guanine nucleotide-bindin ( 75) 363 104.7 1.4e-23
XP_006718563 (OMIM: 608941) PREDICTED: guanine nuc ( 75) 363 104.7 1.4e-23
XP_016882095 (OMIM: 604430) PREDICTED: guanine nuc ( 68) 306 89.2 5.7e-19
NP_443079 (OMIM: 604430) guanine nucleotide-bindin ( 68) 306 89.2 5.7e-19
XP_016857299 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 291 85.2 1e-17
NP_061329 (OMIM: 615405) guanine nucleotide-bindin ( 72) 291 85.2 1e-17
XP_016857300 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 291 85.2 1e-17
XP_016857298 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 291 85.2 1e-17
NP_001185593 (OMIM: 604389) guanine nucleotide-bin ( 68) 228 68.1 1.3e-12
NP_001017998 (OMIM: 604389) guanine nucleotide-bin ( 68) 228 68.1 1.3e-12
NP_005265 (OMIM: 600874) guanine nucleotide-bindin ( 68) 226 67.6 1.9e-12
NP_001185683 (OMIM: 139391) guanine nucleotide-bin ( 69) 157 48.9 7.8e-07
NP_001185685 (OMIM: 139391) guanine nucleotide-bin ( 69) 157 48.9 7.8e-07
NP_001185684 (OMIM: 139391) guanine nucleotide-bin ( 69) 157 48.9 7.8e-07
NP_113686 (OMIM: 139391) guanine nucleotide-bindin ( 69) 157 48.9 7.8e-07
NP_068774 (OMIM: 189970) guanine nucleotide-bindin ( 74) 152 47.6 2.1e-06
NP_001316355 (OMIM: 189970) guanine nucleotide-bin ( 74) 152 47.6 2.1e-06
NP_004117 (OMIM: 604390) guanine nucleotide-bindin ( 73) 146 46.0 6.5e-06
NP_057625 (OMIM: 607298) guanine nucleotide-bindin ( 67) 113 37.0 0.0029
>>XP_006720236 (OMIM: 606981) PREDICTED: guanine nucleot (71 aa)
initn: 454 init1: 454 opt: 454 Z-score: 677.7 bits: 129.3 E(85289): 5.2e-31
Smith-Waterman score: 454; 100.0% identity (100.0% similar) in 71 aa overlap (1-71:1-71)
10 20 30 40 50 60
pF1KB8 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
10 20 30 40 50 60
70
pF1KB8 FREKKFFCAIL
:::::::::::
XP_006 FREKKFFCAIL
70
>>NP_444292 (OMIM: 606981) guanine nucleotide-binding pr (71 aa)
initn: 454 init1: 454 opt: 454 Z-score: 677.7 bits: 129.3 E(85289): 5.2e-31
Smith-Waterman score: 454; 100.0% identity (100.0% similar) in 71 aa overlap (1-71:1-71)
10 20 30 40 50 60
pF1KB8 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_444 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
10 20 30 40 50 60
70
pF1KB8 FREKKFFCAIL
:::::::::::
NP_444 FREKKFFCAIL
70
>>XP_011535148 (OMIM: 606981) PREDICTED: guanine nucleot (71 aa)
initn: 454 init1: 454 opt: 454 Z-score: 677.7 bits: 129.3 E(85289): 5.2e-31
Smith-Waterman score: 454; 100.0% identity (100.0% similar) in 71 aa overlap (1-71:1-71)
10 20 30 40 50 60
pF1KB8 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
10 20 30 40 50 60
70
pF1KB8 FREKKFFCAIL
:::::::::::
XP_011 FREKKFFCAIL
70
>>XP_016876866 (OMIM: 606981) PREDICTED: guanine nucleot (71 aa)
initn: 454 init1: 454 opt: 454 Z-score: 677.7 bits: 129.3 E(85289): 5.2e-31
Smith-Waterman score: 454; 100.0% identity (100.0% similar) in 71 aa overlap (1-71:1-71)
10 20 30 40 50 60
pF1KB8 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
10 20 30 40 50 60
70
pF1KB8 FREKKFFCAIL
:::::::::::
XP_016 FREKKFFCAIL
70
>>XP_016876865 (OMIM: 606981) PREDICTED: guanine nucleot (71 aa)
initn: 454 init1: 454 opt: 454 Z-score: 677.7 bits: 129.3 E(85289): 5.2e-31
Smith-Waterman score: 454; 100.0% identity (100.0% similar) in 71 aa overlap (1-71:1-71)
10 20 30 40 50 60
pF1KB8 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
10 20 30 40 50 60
70
pF1KB8 FREKKFFCAIL
:::::::::::
XP_016 FREKKFFCAIL
70
>>NP_001230702 (OMIM: 606981) guanine nucleotide-binding (71 aa)
initn: 454 init1: 454 opt: 454 Z-score: 677.7 bits: 129.3 E(85289): 5.2e-31
Smith-Waterman score: 454; 100.0% identity (100.0% similar) in 71 aa overlap (1-71:1-71)
10 20 30 40 50 60
pF1KB8 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
10 20 30 40 50 60
70
pF1KB8 FREKKFFCAIL
:::::::::::
NP_001 FREKKFFCAIL
70
>>NP_001230703 (OMIM: 606981) guanine nucleotide-binding (71 aa)
initn: 454 init1: 454 opt: 454 Z-score: 677.7 bits: 129.3 E(85289): 5.2e-31
Smith-Waterman score: 454; 100.0% identity (100.0% similar) in 71 aa overlap (1-71:1-71)
10 20 30 40 50 60
pF1KB8 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
10 20 30 40 50 60
70
pF1KB8 FREKKFFCAIL
:::::::::::
NP_001 FREKKFFCAIL
70
>>NP_001092192 (OMIM: 604388) guanine nucleotide-binding (75 aa)
initn: 381 init1: 381 opt: 381 Z-score: 570.5 bits: 109.5 E(85289): 4.9e-25
Smith-Waterman score: 381; 77.5% identity (95.8% similar) in 71 aa overlap (1-71:5-75)
10 20 30 40 50
pF1KB8 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPA
:..:.:.::.:::: :::::::: .::.:::.:::::.::::::..::::. ::::
NP_001 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
10 20 30 40 50 60
60 70
pF1KB8 SENPFREKKFFCAIL
::::::::::::.::
NP_001 SENPFREKKFFCTIL
70
>>NP_004476 (OMIM: 604388) guanine nucleotide-binding pr (75 aa)
initn: 381 init1: 381 opt: 381 Z-score: 570.5 bits: 109.5 E(85289): 4.9e-25
Smith-Waterman score: 381; 77.5% identity (95.8% similar) in 71 aa overlap (1-71:5-75)
10 20 30 40 50
pF1KB8 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPA
:..:.:.::.:::: :::::::: .::.:::.:::::.::::::..::::. ::::
NP_004 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
10 20 30 40 50 60
60 70
pF1KB8 SENPFREKKFFCAIL
::::::::::::.::
NP_004 SENPFREKKFFCTIL
70
>>XP_011542469 (OMIM: 604388) PREDICTED: guanine nucleot (75 aa)
initn: 381 init1: 381 opt: 381 Z-score: 570.5 bits: 109.5 E(85289): 4.9e-25
Smith-Waterman score: 381; 77.5% identity (95.8% similar) in 71 aa overlap (1-71:5-75)
10 20 30 40 50
pF1KB8 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPA
:..:.:.::.:::: :::::::: .::.:::.:::::.::::::..::::. ::::
XP_011 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
10 20 30 40 50 60
60 70
pF1KB8 SENPFREKKFFCAIL
::::::::::::.::
XP_011 SENPFREKKFFCTIL
70
71 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 19:55:47 2016 done: Sat Nov 5 19:55:47 2016
Total Scan time: 3.900 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]