Result of FASTA (omim) for pF1KB7905
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7905, 124 aa
  1>>>pF1KB7905 124 - 124 aa - 124 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9232+/-0.000286; mu= 13.0415+/- 0.018
 mean_var=62.4071+/-11.836, 0's: 0 Z-trim(118.5): 17  B-trim: 73 in 1/50
 Lambda= 0.162352
 statistics sampled from 31486 (31503) to 31486 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.369), width:  16
 Scan time:  4.500

The best scores are:                                      opt bits E(85289)
NP_005636 (OMIM: 600774) transcription initiation  ( 124)  816 198.7   2e-51
XP_016866861 (OMIM: 602947) PREDICTED: transcripti ( 317)  163 46.0 4.7e-05
NP_003590 (OMIM: 602947) transcription initiation  ( 317)  163 46.0 4.7e-05
XP_016866860 (OMIM: 602947) PREDICTED: transcripti ( 317)  163 46.0 4.7e-05
XP_011513254 (OMIM: 602947) PREDICTED: transcripti ( 319)  163 46.0 4.7e-05
XP_011513252 (OMIM: 602947) PREDICTED: transcripti ( 319)  163 46.0 4.7e-05
XP_011513256 (OMIM: 602947) PREDICTED: transcripti ( 319)  163 46.0 4.7e-05
XP_011513255 (OMIM: 602947) PREDICTED: transcripti ( 319)  163 46.0 4.7e-05
XP_011513253 (OMIM: 602947) PREDICTED: transcripti ( 319)  163 46.0 4.7e-05
XP_016866862 (OMIM: 602947) PREDICTED: transcripti ( 296)  130 38.3  0.0095


>>NP_005636 (OMIM: 600774) transcription initiation fact  (124 aa)
 initn: 816 init1: 816 opt: 816  Z-score: 1044.2  bits: 198.7 E(85289): 2e-51
Smith-Waterman score: 816; 100.0% identity (100.0% similar) in 124 aa overlap (1-124:1-124)

               10        20        30        40        50        60
pF1KB7 MADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 VIEFITEMTHKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VIEFITEMTHKAMSIGRQGRVQVEDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEA
               70        80        90       100       110       120

           
pF1KB7 NYGS
       ::::
NP_005 NYGS
           

>>XP_016866861 (OMIM: 602947) PREDICTED: transcription i  (317 aa)
 initn: 162 init1:  95 opt: 163  Z-score: 211.7  bits: 46.0 E(85289): 4.7e-05
Smith-Waterman score: 163; 31.9% identity (67.0% similar) in 91 aa overlap (32-119:26-116)

              10        20        30        40        50        60 
pF1KB7 ADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLV
                                     :. ::. :::..:: . :  :.. ..::.:
XP_016      MNNTAASPMSTATSSSGRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVV
                    10        20        30        40        50     

              70          80         90       100       110        
pF1KB7 IEFITEMTHKAMSIG--RQGRVQV-EDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD
          . .. ..:  ..  : .:: . ::..::.::: .:. :.   . . .  ..  :..:
XP_016 HTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGID
          60        70        80        90       100       110     

      120                                                          
pF1KB7 EANYGS                                                      
       :                                                           
XP_016 EDDLLEDKLSGSNNANKRQKIAQDFLNSIDQTGELLAMFEDDEIDEVKQERMERAERQTR
         120       130       140       150       160       170     

>>NP_003590 (OMIM: 602947) transcription initiation prot  (317 aa)
 initn: 162 init1:  95 opt: 163  Z-score: 211.7  bits: 46.0 E(85289): 4.7e-05
Smith-Waterman score: 163; 31.9% identity (67.0% similar) in 91 aa overlap (32-119:26-116)

              10        20        30        40        50        60 
pF1KB7 ADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLV
                                     :. ::. :::..:: . :  :.. ..::.:
NP_003      MNNTAASPMSTATSSSGRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVV
                    10        20        30        40        50     

              70          80         90       100       110        
pF1KB7 IEFITEMTHKAMSIG--RQGRVQV-EDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD
          . .. ..:  ..  : .:: . ::..::.::: .:. :.   . . .  ..  :..:
NP_003 HTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGID
          60        70        80        90       100       110     

      120                                                          
pF1KB7 EANYGS                                                      
       :                                                           
NP_003 EDDLLEDKLSGSNNANKRQKIAQDFLNSIDQTGELLAMFEDDEIDEVKQERMERAERQTR
         120       130       140       150       160       170     

>>XP_016866860 (OMIM: 602947) PREDICTED: transcription i  (317 aa)
 initn: 162 init1:  95 opt: 163  Z-score: 211.7  bits: 46.0 E(85289): 4.7e-05
Smith-Waterman score: 163; 31.9% identity (67.0% similar) in 91 aa overlap (32-119:26-116)

              10        20        30        40        50        60 
pF1KB7 ADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLV
                                     :. ::. :::..:: . :  :.. ..::.:
XP_016      MNNTAASPMSTATSSSGRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVV
                    10        20        30        40        50     

              70          80         90       100       110        
pF1KB7 IEFITEMTHKAMSIG--RQGRVQV-EDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD
          . .. ..:  ..  : .:: . ::..::.::: .:. :.   . . .  ..  :..:
XP_016 HTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGID
          60        70        80        90       100       110     

      120                                                          
pF1KB7 EANYGS                                                      
       :                                                           
XP_016 EDDLLEDKLSGSNNANKRQKIAQDFLNSIDQTGELLAMFEDDEIDEVKQERMERAERQTR
         120       130       140       150       160       170     

>>XP_011513254 (OMIM: 602947) PREDICTED: transcription i  (319 aa)
 initn: 162 init1:  95 opt: 163  Z-score: 211.7  bits: 46.0 E(85289): 4.7e-05
Smith-Waterman score: 163; 31.9% identity (67.0% similar) in 91 aa overlap (32-119:26-116)

              10        20        30        40        50        60 
pF1KB7 ADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLV
                                     :. ::. :::..:: . :  :.. ..::.:
XP_011      MNNTAASPMSTATSSSGRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVV
                    10        20        30        40        50     

              70          80         90       100       110        
pF1KB7 IEFITEMTHKAMSIG--RQGRVQV-EDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD
          . .. ..:  ..  : .:: . ::..::.::: .:. :.   . . .  ..  :..:
XP_011 HTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGID
          60        70        80        90       100       110     

      120                                                          
pF1KB7 EANYGS                                                      
       :                                                           
XP_011 EDDLLEDKLSGSNNANKRQKIAQDFLNSIDQTGELLAMFEDDEIDEVKQERMERAERQTR
         120       130       140       150       160       170     

>>XP_011513252 (OMIM: 602947) PREDICTED: transcription i  (319 aa)
 initn: 162 init1:  95 opt: 163  Z-score: 211.7  bits: 46.0 E(85289): 4.7e-05
Smith-Waterman score: 163; 31.9% identity (67.0% similar) in 91 aa overlap (32-119:26-116)

              10        20        30        40        50        60 
pF1KB7 ADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLV
                                     :. ::. :::..:: . :  :.. ..::.:
XP_011      MNNTAASPMSTATSSSGRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVV
                    10        20        30        40        50     

              70          80         90       100       110        
pF1KB7 IEFITEMTHKAMSIG--RQGRVQV-EDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD
          . .. ..:  ..  : .:: . ::..::.::: .:. :.   . . .  ..  :..:
XP_011 HTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGID
          60        70        80        90       100       110     

      120                                                          
pF1KB7 EANYGS                                                      
       :                                                           
XP_011 EDDLLEDKLSGSNNANKRQKIAQDFLNSIDQTGELLAMFEDDEIDEVKQERMERAERQTR
         120       130       140       150       160       170     

>>XP_011513256 (OMIM: 602947) PREDICTED: transcription i  (319 aa)
 initn: 162 init1:  95 opt: 163  Z-score: 211.7  bits: 46.0 E(85289): 4.7e-05
Smith-Waterman score: 163; 31.9% identity (67.0% similar) in 91 aa overlap (32-119:26-116)

              10        20        30        40        50        60 
pF1KB7 ADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLV
                                     :. ::. :::..:: . :  :.. ..::.:
XP_011      MNNTAASPMSTATSSSGRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVV
                    10        20        30        40        50     

              70          80         90       100       110        
pF1KB7 IEFITEMTHKAMSIG--RQGRVQV-EDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD
          . .. ..:  ..  : .:: . ::..::.::: .:. :.   . . .  ..  :..:
XP_011 HTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGID
          60        70        80        90       100       110     

      120                                                          
pF1KB7 EANYGS                                                      
       :                                                           
XP_011 EDDLLEDKLSGSNNANKRQKIAQDFLNSIDQTGELLAMFEDDEIDEVKQERMERAERQTR
         120       130       140       150       160       170     

>>XP_011513255 (OMIM: 602947) PREDICTED: transcription i  (319 aa)
 initn: 162 init1:  95 opt: 163  Z-score: 211.7  bits: 46.0 E(85289): 4.7e-05
Smith-Waterman score: 163; 31.9% identity (67.0% similar) in 91 aa overlap (32-119:26-116)

              10        20        30        40        50        60 
pF1KB7 ADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLV
                                     :. ::. :::..:: . :  :.. ..::.:
XP_011      MNNTAASPMSTATSSSGRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVV
                    10        20        30        40        50     

              70          80         90       100       110        
pF1KB7 IEFITEMTHKAMSIG--RQGRVQV-EDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD
          . .. ..:  ..  : .:: . ::..::.::: .:. :.   . . .  ..  :..:
XP_011 HTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGID
          60        70        80        90       100       110     

      120                                                          
pF1KB7 EANYGS                                                      
       :                                                           
XP_011 EDDLLEDKLSGSNNANKRQKIAQDFLNSIDQTGELLAMFEDDEIDEVKQERMERAERQTR
         120       130       140       150       160       170     

>>XP_011513253 (OMIM: 602947) PREDICTED: transcription i  (319 aa)
 initn: 162 init1:  95 opt: 163  Z-score: 211.7  bits: 46.0 E(85289): 4.7e-05
Smith-Waterman score: 163; 31.9% identity (67.0% similar) in 91 aa overlap (32-119:26-116)

              10        20        30        40        50        60 
pF1KB7 ADEEEDPTFEEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLV
                                     :. ::. :::..:: . :  :.. ..::.:
XP_011      MNNTAASPMSTATSSSGRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVV
                    10        20        30        40        50     

              70          80         90       100       110        
pF1KB7 IEFITEMTHKAMSIG--RQGRVQV-EDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD
          . .. ..:  ..  : .:: . ::..::.::: .:. :.   . . .  ..  :..:
XP_011 HTQLINLLQQAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGID
          60        70        80        90       100       110     

      120                                                          
pF1KB7 EANYGS                                                      
       :                                                           
XP_011 EDDLLEDKLSGSNNANKRQKIAQDFLNSIDQTGELLAMFEDDEIDEVKQERMERAERQTR
         120       130       140       150       160       170     

>>XP_016866862 (OMIM: 602947) PREDICTED: transcription i  (296 aa)
 initn: 115 init1:  81 opt: 130  Z-score: 170.4  bits: 38.3 E(85289): 0.0095
Smith-Waterman score: 130; 29.3% identity (65.9% similar) in 82 aa overlap (41-119:14-95)

               20        30        40        50        60        70
pF1KB7 EEENEEIGGGAEGGQGKRKRLFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTH
                                     :..:: . :  :.. ..::.:   . .. .
XP_016                  MVVFGTTFFNFDRYSLGDARRPLHETAVLVEDVVHTQLINLLQ
                                10        20        30        40   

                 80         90       100       110       120       
pF1KB7 KAMSIG--RQGRVQV-EDIVFLIRKDPRKFARVKDLLTMNEELKRARKAFDEANYGS   
       .:  ..  : .:: . ::..::.::: .:. :.   . . .  ..  :..::        
XP_016 QAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDEDDLLEDKL
            50        60        70        80        90       100   

XP_016 SGSNNANKRQKIAQDFLNSIDQTGELLAMFEDDEIDEVKQERMERAERQTRIMDSAQYAE
           110       120       130       140       150       160   




124 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:47:57 2016 done: Sat Nov  5 19:47:57 2016
 Total Scan time:  4.500 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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