FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0469, 208 aa
  1>>>pF1KE0469 208 - 208 aa - 208 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2945+/-0.000622; mu= 13.4915+/- 0.037
 mean_var=61.9752+/-12.514, 0's: 0 Z-trim(110.7): 4  B-trim: 0 in 0/51
 Lambda= 0.162917
 statistics sampled from 11796 (11799) to 11796 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.362), width:  16
 Scan time:  2.230

The best scores are:                                      opt bits E(32554)
CCDS10479.2 ZG16B gene_id:124220|Hs108|chr16       ( 208) 1396 336.0   1e-92
CCDS54000.1 ZG16 gene_id:653808|Hs108|chr16        ( 167)  280 73.7 7.6e-14


>>CCDS10479.2 ZG16B gene_id:124220|Hs108|chr16            (208 aa)
 initn: 1396 init1: 1396 opt: 1396  Z-score: 1778.2  bits: 336.0 E(32554): 1e-92
Smith-Waterman score: 1396; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208)

               10        20        30        40        50        60
pF1KE0 MGAQGAQESIKAMWRVPGTTRRPVTGESPGMHRPEAMLLLLTLALLGGPTWAGKMYGPGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGAQGAQESIKAMWRVPGTTRRPVTGESPGMHRPEAMLLLLTLALLGGPTWAGKMYGPGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GKYFSTTEDYDHEITGLRVSVGLLLVKSVQVKLGDSWDVKLGALGGNTQEVTLQPGEYIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GKYFSTTEDYDHEITGLRVSVGLLLVKSVQVKLGDSWDVKLGALGGNTQEVTLQPGEYIT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KVFVAFQAFLRGMVMYTSKDRYFYFGKLDGQISSAYPSQEGQVLVGIYGQYQLLGIKSIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KVFVAFQAFLRGMVMYTSKDRYFYFGKLDGQISSAYPSQEGQVLVGIYGQYQLLGIKSIG
              130       140       150       160       170       180

              190       200        
pF1KE0 FEWNYPLEEPTTEPPVNLTYSANSPVGR
       ::::::::::::::::::::::::::::
CCDS10 FEWNYPLEEPTTEPPVNLTYSANSPVGR
              190       200        

>>CCDS54000.1 ZG16 gene_id:653808|Hs108|chr16             (167 aa)
 initn: 255 init1: 240 opt: 280  Z-score: 362.0  bits: 73.7 E(32554): 7.6e-14
Smith-Waterman score: 280; 36.7% identity (65.5% similar) in 139 aa overlap (50-186:25-161)

      20        30        40        50        60         70        
pF1KE0 TRRPVTGESPGMHRPEAMLLLLTLALLGGPTWAGKMYGPGGGKYFSTT-EDYDHEITGLR
                                     ...:. :: :::: :: . .. :  ::.::
CCDS54       MLTVALLALLCASASGNAIQARSSSYSGE-YGGGGGKRFSHSGNQLDGPITALR
                     10        20         30        40        50   

       80        90       100       110       120       130        
pF1KE0 VSVGLLLVKSVQVKLGDSWDVKLGALGGNTQEVTLQPGEYITKVFVAFQAFLRGMVMYTS
       : :.   . ..::. :  :.  .:. .:. .:. :.::: . .:   .. .:. .:. :.
CCDS54 VRVNTYYIVGLQVRYGKVWSDYVGGRNGDLEEIFLHPGESVIQVSGKYKWYLKKLVFVTD
            60        70        80        90       100       110   

      140       150       160       170       180        190       
pF1KE0 KDRYFYFGKLDGQISSAYPSQEGQVLVGIYGQYQLLGIKSIGFEWN-YPLEEPTTEPPVN
       : ::. ::: .:   .: : . . ::  : :.   : : .::..:. ::           
CCDS54 KGRYLSFGKDSGTSFNAVPLHPNTVLRFISGRSGSL-IDAIGLHWDVYPSSCSRC     
           120       130       140        150       160            

       200        
pF1KE0 LTYSANSPVGR




208 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:30:21 2016 done: Thu Nov  3 06:30:22 2016
 Total Scan time:  2.230 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]