hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/Pfam.bin Sequence file: /tmp/20080627/iprscan-20080627-01225248/chunk_1/iprscan-20080627-01225248.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KB7689 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00605.8.ls Interferon regulatory factor transcription f 311.6 1.3e-90 1 PF00605.8.fs Interferon regulatory factor transcription f 309.7 4.8e-90 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00605.8.fs 1/1 5 114 .. 1 111 [] 309.7 4.8e-90 PF00605.8.ls 1/1 5 114 .. 1 111 [] 311.6 1.3e-90 Alignments of top-scoring domains: PF00605.8.fs: domain 1 of 1, from 5 to 114: score 309.7, E = 4.8e-90 *->RmRlRpWLveQInSnqiPGLiWenkeksiFrIPWkHAgKqdwdeekD RmR+RpWL+eQInSn+iPGL+W+nkek+iF+IPW+HA++++wd+ekD pF1KB7689 5 RMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKD 51 AalFkaWAIfkGKyKeGvDkaPdPatWKtrlRCAlNksPDfeEVkDrSrl A+lF++WAI++GK+++GvDk+ dP+tWK+++RCA+N++PD+eEVkD+S++ pF1KB7689 52 APLFRNWAIHTGKHQPGVDKP-DPKTWKANFRCAMNSLPDIEEVKDKSIK 100 dvsepykVYrlLPp<-* +++++++VYr+LP+ pF1KB7689 101 KGNNAFRVYRMLPL 114 PF00605.8.ls: domain 1 of 1, from 5 to 114: score 311.6, E = 1.3e-90 *->RmRlRpWLveQInSnqiPGLiWenkeksiFrIPWkHAgKqdwdeekD RmR+RpWL+eQInSn+iPGL+W+nkek+iF+IPW+HA++++wd+ekD pF1KB7689 5 RMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKD 51 AalFkaWAIfkGKyKeGvDkaPdPatWKtrlRCAlNksPDfeEVkDrSrl A+lF++WAI++GK+++GvDk+ dP+tWK+++RCA+N++PD+eEVkD+S++ pF1KB7689 52 APLFRNWAIHTGKHQPGVDKP-DPKTWKANFRCAMNSLPDIEEVKDKSIK 100 dvsepykVYrlLPp<-* +++++++VYr+LP+ pF1KB7689 101 KGNNAFRVYRMLPL 114 //