GENSCAN 1.0	Date run:  5-Nov-116	Time: 01:04:25

Sequence gi568815596r:112675070_112883770 : 208701 bp : 43.73% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   8939   9071  133  2  1   94   81    57 0.643   6.25
 1.02 Term +  13803  14006  204  2  0   20   48   183 0.954   4.87
 1.03 PlyA +  14848  14853    6                               1.05

 2.04 PlyA -  16855  16850    6                               1.05
 2.03 Term -  18652  18560   93  1  0   98   43    73 0.946   1.63
 2.02 Intr -  18824  18729   96  2  0   44   85    96 0.453   5.11
 2.01 Init -  20377  20345   33  1  0   48   93    79 0.889   2.29
 2.00 Prom -  24629  24590   40                              -4.66

 3.03 PlyA -  26274  26269    6                               1.05
 3.02 Term -  33013  32902  112  0  1   89   53    69 0.822   1.53
 3.01 Init -  36347  36244  104  2  2   65   91    88 0.876   6.51
 3.00 Prom -  41762  41723   40                              -2.46

 4.00 Prom +  42057  42096   40                              -6.46
 4.01 Init +  42831  42922   92  2  2   84  119    25 0.869   5.17
 4.02 Intr +  46749  46822   74  0  2  137   40   139 0.994  13.05
 4.03 Intr +  46917  47034  118  1  1   68   89   282 0.905  25.82
 4.04 Intr +  47114  47209   96  2  0   83   55   227 0.841  18.02
 4.05 Intr +  47429  47520   92  2  2   83   68   101 0.998   7.24
 4.06 Intr +  47645  47702   58  0  1  111   40    99 0.779   5.34
 4.07 Intr +  48012  48105   94  0  1   86  109   163 0.998  18.17
 4.08 Intr +  48349  48399   51  0  0   82   76    86 0.981   5.90
 4.09 Intr +  48650  48733   84  1  0   61   82    95 0.977   6.22
 4.10 Intr +  49025  49057   33  1  0   86  105    48 0.893   4.72
 4.11 Intr +  49712  49837  126  1  0   44   78    67 0.658   2.18
 4.12 Intr +  50105  50171   67  1  1   94   66    51 0.915   1.98
 4.13 Intr +  50313  50483  171  1  0   39   84   230 0.995  17.61
 4.14 Intr +  51169  51220   52  2  1   82   44    60 0.884  -1.03
 4.15 Intr +  51609  51669   61  0  1   70   75    72 0.813   2.84
 4.16 Term +  52730  52942  213  1  0   45   47   334 0.837  22.23
 4.17 PlyA +  55718  55723    6                               1.05

 5.15 PlyA -  56337  56332    6                               1.05
 5.14 Term -  63979  63754  226  0  1  102   28   120 0.879   3.65
 5.13 Intr -  65938  65749  190  2  1   53   87    98 0.885   4.84
 5.12 Intr -  67700  67637   64  2  1   97   74    30 0.984   0.79
 5.11 Intr -  71506  71351  156  1  0   84   79   108 0.987   9.71
 5.10 Intr -  77405  77198  208  1  1   67   98   119 0.982   9.88
 5.09 Intr -  82145  80908 1238  2  2  103   75   433 0.967  30.80
 5.08 Intr -  85695  85644   52  2  1   95   84    27 0.841   1.91
 5.07 Intr -  89613  89493  121  1  1   65  109   136 0.837  12.95
 5.06 Intr - 100198 100168   31  1  1   94   72    33 0.335   0.00
 5.05 Intr - 103042 102918  125  2  2   75   86    93 0.998   8.10
 5.04 Intr - 104597 104427  171  0  0   59   88   213 0.989  18.31
 5.03 Intr - 106757 106535  223  2  1  123  116   286 0.999  32.60
 5.02 Intr - 107758 107647  112  0  1   25  115    70 0.750   3.78
 5.01 Init - 108701 108655   47  2  2  101  110    56 0.966   9.25
 5.00 Prom - 117509 117470   40                              -4.06

 6.00 Prom + 121845 121884   40                               1.34
 6.01 Sngl + 123166 123453  288  0  0   87   34   159 0.760   6.05
 6.02 PlyA + 123834 123839    6                               1.05

 7.04 PlyA - 123869 123864    6                               1.05
 7.03 Term - 126237 126112  126  0  0  -12   42   157 0.125  -0.62
 7.02 Intr - 128102 127955  148  1  1   34   15   109 0.043  -1.56
 7.01 Init - 139501 139356  146  1  2   55   81   108 0.654   6.39
 7.00 Prom - 142568 142529   40                              -4.56

 8.08 PlyA - 142832 142827    6                               1.05
 8.07 Term - 155504 155292  213  2  0  106   43   206 0.996  15.13
 8.06 Intr - 156353 156223  131  0  2  105  107   166 0.999  20.61
 8.05 Intr - 157757 157593  165  0  0   61   94   173 0.999  15.13
 8.04 Intr - 158506 158305  202  1  1  125   63   298 0.966  29.86
 8.03 Intr - 160548 160497   52  2  1   83  116    67 0.999   7.91
 8.02 Intr - 161175 161114   62  0  2   93   82    88 0.220   6.23
 8.01 Init - 167497 167417   81  1  0   80   78    30 0.070   2.17
 8.00 Prom - 191116 191077   40                              -3.46

 9.00 Prom + 191714 191753   40                              -2.76
 9.01 Init + 202716 202804   89  2  2   78   73    98 0.435   7.42
 9.02 Term + 206689 206707   19  1  1  123   44    -3 0.129  -3.41
 9.03 PlyA + 207432 207437    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:112675070_112883770|GENSCAN_predicted_peptide_1|112_aa
XSFPPGLPDDPGDRLPGPIRRPFSYQPQAAMRLLVPPNVQLPDSKWGALAGGIVWRWKVD
LPTAIVGVPSLSLLFMMLLICLPVGMNIKFRKQNEASGQPTPLCPPDEDALS

>gi568815596r:112675070_112883770|GENSCAN_predicted_CDS_1|339_bp
nnctccttcccgccaggtttaccagatgaccctggagataggcttccaggtcctatcagg
cgccctttctcctatcagcctcaggcagctatgcgcctgctggtcccacccaatgtgcaa
ctccctgactcgaagtggggggcactcgccggaggcatcgtctggaggtggaaagtggat
ctgccgacagccatcgtgggtgttccgtccttgagtctgcttttcatgatgttactcatc
tgtttgcctgtggggatgaacatcaaattccgaaaacaaaatgaagccagtggccagccc
acaccgctgtgccctcctgatgaagatgccctgagctag

>gi568815596r:112675070_112883770|GENSCAN_predicted_peptide_2|73_aa
MTAPLHSAWATQLQMYSNGHLCACSAFLPRFHEDMAGGFGDREPHFRVIPSLAHFDPFSR
QQERPDVDERIGV

>gi568815596r:112675070_112883770|GENSCAN_predicted_CDS_2|222_bp
atgacggctccgctgcactcggcctgggccacgcaactacagatgtacagcaacgggcac
ctctgcgcctgctccgctttcctgcctcgtttccatgaagacatggctgggggctttggg
gacagggagcctcacttccgggtcattccttccctcgcccactttgacccattctccaga
cagcaggagagacctgatgtggatgagagaattggtgtttag

>gi568815596r:112675070_112883770|GENSCAN_predicted_peptide_3|71_aa
MRDVASASMAAKDRAPGPLERDRKRGKNGAPGTTSAVITAQLLYQRTADPDQTEDTASKE
PDPQSRLVLCD

>gi568815596r:112675070_112883770|GENSCAN_predicted_CDS_3|216_bp
atgagagatgttgcatcggcatctatggcagctaaagatcgagcaccaggacccttggag
agggacagaaagagaggcaagaacggagccccgggaacaaccagtgctgtgattacagct
cagcttctttatcaacggacagctgatccagatcaaacagaggacactgcgagcaaggaa
ccagatcctcagagccgtctggtgctttgtgactga

>gi568815596r:112675070_112883770|GENSCAN_predicted_peptide_4|493_aa
MGRGGFAYRLRIRMLAPSCLGSVPLCHLSAWIFVNRSLALGKIRCFGFDMDYTLAAYKSP
AYEALTFELLLERLVCIGYPHEILRYTYDPTFPTRRLVFDELYGNLLKVDAHGNVLLGAY
GFTFLSEAEIWSFYPSKFIQRDDLQCFYILNMLFNLPETYLYACLVDFFSGCSRYTNCDT
GYQHGNLFMSFRSLFQDVTDAMNNIHQSGCLKKTLEDLEKYVKKDPRLPILLGKMKEVGK
VFLATNSSYNYTNAIMTYLFSISEAEASGRPWRSYFDLIVVDTQKPHFFAEGLVLRQVNT
VMAGAEDSGKLHVGTYTGPHQHCAVYSGGSSDMVCELLGVRGMDILYIGDHIFGDILKSK
KRQGWRTCLVVPELSWELDIWAQEKERLEELKRLDTHLADIYQHMDGSSCELQVINFTKR
EIQRVTQELDLCYSTMGSLFRCGFRQTLFSSQLMRYADLYTAACLDLLYFRVSSALSGGP
GVGGSLRNLHGCL

>gi568815596r:112675070_112883770|GENSCAN_predicted_CDS_4|1482_bp
atgggcagaggcggttttgcctaccgattaagaatacggatgctggcacccagctgcctg
ggctcagtcccactctgccatttatcagcctggatttttgtcaaccgcagcctggcgctg
gggaagattcgttgctttggcttcgacatggactacactctggctgcctacaagtcccca
gcttatgaggccctgaccttcgagctgctgctggagcgcctggtgtgcattgggtacccg
catgagatcctgcgctacacctacgaccccaccttccccaccaggcggctggtgttcgat
gaactctatgggaacctgctgaaggtggacgcccacgggaatgtgctgctgggtgcctat
ggcttcaccttcctctcggaggcagagatctggagcttctaccccagcaagttcattcag
agggacgacctgcagtgtttctacatactcaacatgctcttcaacctgcctgaaacctac
ctctatgcctgcttggtggacttcttctctggctgctcccgttacactaattgtgacacc
ggctatcagcatgggaacctcttcatgtccttccgaagcctcttccaggatgtgactgat
gccatgaataacatccaccagtcgggctgtctcaagaagaccctggaggacttggagaaa
tatgtgaagaaggatccacgcctccccatcctgctggggaagatgaaggaggttgggaaa
gtgtttctggccaccaacagcagctacaactacaccaatgccatcatgacctacctgttc
agcatcagtgaggctgaagcctcgggcaggccctggaggtcctactttgacctgatcgtg
gtggacacgcagaagccccacttctttgcagaggggttggtcctgaggcaggtcaacacg
gtaatggcaggtgcagaggactcaggaaagctccacgtgggcacctacacagggccccac
cagcactgtgctgtctactctggaggctcttcggacatggtgtgcgagctgcttggggtt
cgggggatggacatcctgtacattggggaccacatttttggggacattctcaagtccaag
aagcgtcagggctggcggacttgcctggtggttcctgagctgtcctgggagctggacatc
tgggcccaggagaaggagcggttggaggagctgaagagactggacacgcacctggcagac
atataccagcacatggatgggagcagttgtgagctgcaagtcatcaacttcaccaagaga
gagatccagagggtcacccaggagctggacctgtgctacagcaccatgggcagcttgttc
cgctgcggtttccgccagacactcttctccagccagctgatgcgctatgccgacctctac
actgccgcctgcctcgacctcctgtacttccgagtgagctcagctctctcgggcggcccc
ggagttggtgggtccctgcggaatctccacggctgtttgtga

>gi568815596r:112675070_112883770|GENSCAN_predicted_peptide_5|987_aa
MAKVPDMFEDLKNCYSTLARDHTEITTITFSSSYFDSENEEDSSSIDHLSLNQKSFYHVS
YGPLHEGCMDQSVSLSISETSKTSKLTFKESMVVVATNGKVLKKRRLSLSQSITDDDLEA
IANDSEEEIIKPRSAPFSFLSNVKYNFMRIIKYEFILNDALNQSIIRANDQYLTAAALHN
LDEAVKFDMGAYKSSKDDAKITVILRISKTQLYVTAQDEDQPVLLKEMPEIPKTITGANE
DAWTRGTPVLATGAAFEEKLSLKSHGGARAYRCCRCRPYLKSKNNCQNQPPSKSTIRPKN
DVTNHVVLPVKPKRSISIKLQPRPPNTAGSQKPKLEPPKLLGKRLTSECVSSNPYSKPSS
KSFQQCEAGSSTTGELSRKPVGSLNIEQLKTTKQQLTDQGNGKCIDFMNNIHVENESLDN
FLKETNKENLLDILTEPERKPDPKLYTRSKPKTDSYNQTKNSLVPKQALGKSSVNSAVLK
DRVNKQFVGETQSRTFPVKSQQLSRGADLARPGVKPSRTVPSHFIRTLSKVQSSKKPVVK
NIKDIKVNRSQYERPNETKIRSYPVTEQRVKHTKPRTYPSLLQGEYNNRHPNIKQDQKSS
QVCIPQTSCVLQKSKAISQRPNLTVGRFNSAIPSTPSIRPNGTSGNKHNNNGFQQKAQTL
DSKLKKAVPQNHFLNKTAPKTQADVTTVNGTQTNPNIKKKATAEDRRKQLEEWQKSKGKT
YKRPPMELKTKRKVIKEMNISFWKSIEKEEEEKKAQLELSSKINNTLTECLNLIEGGVPS
NEILNILSSIPEAEKFAKFWICKAKLLASKGTFDVIGLYEEAIKNGATPIQELRKVVLNI
LQDSNRTTEGITSDSLVAETSITSVEELAKKMESVKSCLSPKEREQVTATPRIAKAEQHN
YPGIKLQIGPIPRINGMPEVQDMKFITPVRRSSRIERAVSRYPEMLQEHDLVVASLDELL
EVEETKCFIFRRNEALPVTLGFQTPES

>gi568815596r:112675070_112883770|GENSCAN_predicted_CDS_5|2964_bp
atggccaaagttccagacatgtttgaagacctgaagaactgttacagtacattggccaga
gaccacactgaaataacaacaattacattctcatcatcttattttgacagtgaaaatgaa
gaagacagttcctccattgatcatctgtctctgaatcagaaatccttctatcatgtaagc
tatggcccactccatgaaggctgcatggatcaatctgtgtctctgagtatctctgaaacc
tctaaaacatccaagcttaccttcaaggagagcatggtggtagtagcaaccaacgggaag
gttctgaagaagagacggttgagtttaagccaatccatcactgatgatgacctggaggcc
atcgccaatgactcagaggaagaaatcatcaagcctaggtcagcaccttttagcttcctg
agcaatgtgaaatacaactttatgaggatcatcaaatacgaattcatcctgaatgacgcc
ctcaatcaaagtataattcgagccaatgatcagtacctcacggctgctgcattacataat
ctggatgaagcagtgaaatttgacatgggtgcttataagtcatcaaaggatgatgctaaa
attaccgtgattctaagaatctcaaaaactcaattgtatgtgactgcccaagatgaagac
caaccagtgctgctgaaggagatgcctgagatacccaaaaccatcacaggagccaatgag
gacgcgtggacgcgcggcacgccggtcctggctacaggcgcggcgtttgaagaaaaactg
tcactgaagagtcatggtggggcccgggcctaccgctgctgccgctgtcggccttatcta
aaatccaagaataattgccagaatcaaccaccttctaaatctactattagacccaaaaat
gatgttaccaaccatgttgttttgcctgtcaaacctaaaaggtccatcagcattaaactc
cagcccagaccacctaatactgcagggtcccagaagccgaagttggagccaccaaaactt
ctgggcaaaaggctgacttcagaatgtgtttcttctaacccatactctaagccttctagc
aagagttttcaacagtgtgaagctggatcgtccacaacaggagaactgtcaagaaaacct
gtggggtcacttaatatagagcaattgaaaactacaaagcagcagttaacagatcaagga
aatggtaaatgtatagactttatgaataatatccatgttgaaaacgaatctttggataac
tttctaaaagaaacaaacaaagagaacttgctcgatatcttaacagaacctgagaggaag
ccagatcctaaattatataccagaagtaagccaaagactgactcttataatcaaaccaag
aacagtttagttcctaaacaagccttgggcaaaagttcagttaatagtgctgttctgaaa
gatagggttaataaacaatttgttggagaaacacaaagcaggactttcccagtaaaatca
cagcaactctctagaggagcagatcttgcaagaccaggagtaaaaccctcaaggacggtt
ccctctcactttattcggacccttagtaaagttcagtcatcaaagaaaccagtagtcaag
aacatcaaagatataaaggttaataggagtcaatatgaaagaccaaatgaaactaagata
cggtcataccctgttactgaacagagagtgaagcacaccaaacccagaacataccccagt
ttgcttcagggtgaatataacaacagacatccaaacatcaagcaagatcagaagtccagc
caagtttgtatacctcagacatcatgtgtactgcaaaagtcaaaagccataagccagagg
cctaatttgacagttggcagatttaattcagccattccaagcacccctagcataagacca
aatggaaccagtggtaataaacataacaataatggctttcagcaaaaagcacagactttg
gactccaagttgaaaaaggctgttccccagaaccattttctgaacaagacagctcccaaa
actcaagctgatgtcacaaccgtaaatgggacccaaacaaacccaaatattaaaaagaag
gcaacagcagaggatcgaaggaaacaactagaagaatggcagaaatctaagggaaaaacc
tataaacggcctcctatggaacttaaaacaaaaagaaaagtaataaaggaaatgaatatt
tcattctggaagagcattgaaaaagaagaggaagaaaagaaagcacaactcgaactgtcc
agtaaaattaacaacactctgacagaatgtctgaacctcatcgaagggggtgtaccttct
aatgaaatacttaacatattgtccagcattcctgaagctgaaaaatttgctaaattctgg
atctgcaaagcaaagttgttggcaagtaaaggcacctttgatgttattgggctatatgaa
gaggccattaaaaatggggcaacaccaatacaagagttgcggaaagttgttcttaatatc
ttgcaagactcaaacagaaccacagaagggattacttctgactctttagttgctgaaact
agtataacatcagtggaagagctggccaagaagatggaatctgtgaagtcttgtctttct
ccaaaagagagggaacaagtcacggcgacaccccgaatagccaaggcagaacagcataat
tatcctggtatcaaattacagattggtccaatccctagaataaatgggatgccggaagtg
caagacatgaaatttatcactcctgtacggcgttcgtcgaggattgagcgagcagtgtcc
cgctacccagaaatgctgcaggaacacgatttagtagtggcttctcttgatgaactgtta
gaagtggaagaaacaaaatgttttatattccgtagaaatgaggcgctgcctgtaacattg
gggtttcaaacccctgaatcataa

>gi568815596r:112675070_112883770|GENSCAN_predicted_peptide_6|95_aa
MGQMRAPGSRSRKMGGNVESVMSWRQGSRQLWFIHVEIKSVWYTPPCEAKIITGSSLLLV
FLIALSSNLWPDFSAFSSVIQCHILPPALSQLRGK

>gi568815596r:112675070_112883770|GENSCAN_predicted_CDS_6|288_bp
atggggcagatgagggccccgggaagcagaagccggaagatgggagggaatgtggagagt
gtgatgtcctggagacaagggagccgacagctgtggttcatccacgtagagataaaatcg
gtgtggtacacacctccctgtgaagccaaaatcatcaccggctcctcattgctgctggtg
ttcctcattgctctttccagcaacctctggcctgatttcagtgccttctcttcagtcatt
cagtgccatattctgcccccagctctttctcaacttagaggaaaatag

>gi568815596r:112675070_112883770|GENSCAN_predicted_peptide_7|139_aa
MYELDPELMDCAMREIPKTAGEALEEGRGPASASPGKSLHSIDAHLSGWITEADDPPSDI
SSGQYQPKHCITMPTSVTSLHLIKEAMDHLTSSQEEEWKGPDEKDFSKGTYYQKAAKASN
GAQREYANNKKLNTLNKKG

>gi568815596r:112675070_112883770|GENSCAN_predicted_CDS_7|420_bp
atgtatgaacttgaccctgagctcatggactgtgccatgagggaaattcctaaaacagca
ggagaggccctggaggaaggcagaggccctgcatcagcaagtccaggcaaaagcctgcat
tccatagatgctcatctctctggctggatcaccgaagcagatgaccctccttctgacata
tcatcaggccaatatcagcctaaacactgcatcactatgcccacatcagtcacctcactt
catctcatcaaggaggcaatggatcacctcacatcatcacaagaagaagagtggaaaggg
ccagacgagaaggacttttctaaaggcacctactaccaaaaagctgccaaggcgtccaat
ggagcccagagagaatatgctaacaataaaaagttgaacaccctcaataaaaaagggtaa

>gi568815596r:112675070_112883770|GENSCAN_predicted_peptide_8|301_aa
MQQQKWREITDPRHSGSAQNEPFKELMVSEAAMAEVPELASEMMAYYSGNEDDLFFEADG
PKQMKCSFQDLDLCPLDGGIQLRISDHHYSKGFRQAASVVVAMDKLRKMLVPCPQTFQEN
DLSTFFPFIFEEEPIFFDTWDNEAYVHDAPVRSLNCTLRDSQQKSLVMSGPYELKALHLQ
GQDMEQQVVFSMSFVQGEESNDKIPVALGLKEKNLYLSCVLKDDKPTLQLESVDPKNYPK
KKMEKRFVFNKIEINNKLEFESAQFPNWYISTSQAENMPVFLGGTKGGQDITDFTMQFVS
S

>gi568815596r:112675070_112883770|GENSCAN_predicted_CDS_8|906_bp
atgcagcagcagaaatggagagaaataacagatcccaggcactcaggaagcgctcagaat
gagcccttcaaagaacttatggtgtctgaagcagccatggcagaagtacctgagctcgcc
agtgaaatgatggcttattacagtggcaatgaggatgacttgttctttgaagctgatggc
cctaaacagatgaagtgctccttccaggacctggacctctgccctctggatggcggcatc
cagctacgaatctccgaccaccactacagcaagggcttcaggcaggccgcgtcagttgtt
gtggccatggacaagctgaggaagatgctggttccctgcccacagaccttccaggagaat
gacctgagcaccttctttcccttcatctttgaagaagaacctatcttcttcgacacatgg
gataacgaggcttatgtgcacgatgcacctgtacgatcactgaactgcacgctccgggac
tcacagcaaaaaagcttggtgatgtctggtccatatgaactgaaagctctccacctccag
ggacaggatatggagcaacaagtggtgttctccatgtcctttgtacaaggagaagaaagt
aatgacaaaatacctgtggccttgggcctcaaggaaaagaatctgtacctgtcctgcgtg
ttgaaagatgataagcccactctacagctggagagtgtagatcccaaaaattacccaaag
aagaagatggaaaagcgatttgtcttcaacaagatagaaatcaataacaagctggaattt
gagtctgcccagttccccaactggtacatcagcacctctcaagcagaaaacatgcccgtc
ttcctgggagggaccaaaggcggccaggatataactgacttcaccatgcaatttgtgtct
tcctaa

>gi568815596r:112675070_112883770|GENSCAN_predicted_peptide_9|35_aa
MILHDIKEHGPVTLQAMDVVVKFDLMMERRDINQA

>gi568815596r:112675070_112883770|GENSCAN_predicted_CDS_9|108_bp
atgatcctacatgatattaaggaacacgggccagtaaccctccaagcaatggatgtggtg
gtgaagtttgacctcatgatggagcggagggatataaaccaggcttag