Result of FASTA (omim) for pF1KB6358
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6358, 296 aa
  1>>>pF1KB6358 296 - 296 aa - 296 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4293+/-0.000293; mu= 10.8457+/- 0.018
 mean_var=105.9341+/-21.894, 0's: 0 Z-trim(120.5): 37  B-trim: 1459 in 2/55
 Lambda= 0.124611
 statistics sampled from 35723 (35769) to 35723 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.419), width:  16
 Scan time:  7.780

The best scores are:                                      opt bits E(85289)
NP_036300 (OMIM: 607112) F-box only protein 2 [Hom ( 296) 2084 384.6 1.2e-106
XP_006710634 (OMIM: 605647) PREDICTED: F-box only  ( 293)  895 170.9 2.7e-42
XP_005263506 (OMIM: 605647) PREDICTED: F-box only  ( 293)  895 170.9 2.7e-42
XP_011539534 (OMIM: 605647) PREDICTED: F-box only  ( 293)  895 170.9 2.7e-42
XP_016856496 (OMIM: 605647) PREDICTED: F-box only  ( 293)  895 170.9 2.7e-42
XP_005263508 (OMIM: 605647) PREDICTED: F-box only  ( 293)  895 170.9 2.7e-42
XP_005263505 (OMIM: 605647) PREDICTED: F-box only  ( 293)  895 170.9 2.7e-42
NP_060908 (OMIM: 605647) F-box only protein 6 [Hom ( 293)  895 170.9 2.7e-42
NP_001291720 (OMIM: 609111) F-box only protein 44  ( 255)  867 165.8 7.9e-41
XP_016858332 (OMIM: 609111) PREDICTED: F-box only  ( 255)  867 165.8 7.9e-41
NP_149438 (OMIM: 609111) F-box only protein 44 iso ( 255)  867 165.8 7.9e-41
NP_001014765 (OMIM: 609111) F-box only protein 44  ( 255)  867 165.8 7.9e-41
XP_006711108 (OMIM: 609111) PREDICTED: F-box only  ( 255)  867 165.8 7.9e-41
NP_849142 (OMIM: 609099) F-box only protein 27 [Ho ( 283)  664 129.3 8.3e-30
NP_079183 (OMIM: 609094) F-box only protein 17 iso ( 278)  501 100.0 5.4e-21
NP_680474 (OMIM: 609094) F-box only protein 17 iso ( 287)  501 100.0 5.6e-21
XP_016881779 (OMIM: 609099) PREDICTED: F-box only  ( 249)  500 99.8 5.6e-21
NP_904320 (OMIM: 609111) F-box only protein 44 iso ( 224)  367 75.9 8.2e-14
NP_001291719 (OMIM: 609111) F-box only protein 44  ( 224)  367 75.9 8.2e-14
XP_016858333 (OMIM: 609111) PREDICTED: F-box only  ( 224)  367 75.9 8.2e-14
NP_904319 (OMIM: 609111) F-box only protein 44 iso ( 224)  367 75.9 8.2e-14
NP_001001414 (OMIM: 615901) F-box only protein 50  ( 275)  366 75.8 1.1e-13
XP_005263594 (OMIM: 609111) PREDICTED: F-box only  ( 256)  363 75.2 1.5e-13
XP_011540737 (OMIM: 609111) PREDICTED: F-box only  ( 256)  363 75.2 1.5e-13
XP_016858331 (OMIM: 609111) PREDICTED: F-box only  ( 256)  363 75.2 1.5e-13
XP_006711106 (OMIM: 609111) PREDICTED: F-box only  ( 256)  363 75.2 1.5e-13
NP_001317284 (OMIM: 609111) F-box only protein 44  ( 256)  363 75.2 1.5e-13
XP_005263593 (OMIM: 609111) PREDICTED: F-box only  ( 256)  363 75.2 1.5e-13
XP_011525208 (OMIM: 615901) PREDICTED: F-box only  ( 195)  190 44.0 0.00028


>>NP_036300 (OMIM: 607112) F-box only protein 2 [Homo sa  (296 aa)
 initn: 2084 init1: 2084 opt: 2084  Z-score: 2035.5  bits: 384.6 E(85289): 1.2e-106
Smith-Waterman score: 2084; 100.0% identity (100.0% similar) in 296 aa overlap (1-296:1-296)

               10        20        30        40        50        60
pF1KB6 MDGDGDPESVGQPEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MDGDGDPESVGQPEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ALPAAELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 ALPAAELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RNLLRNPCGEEDLEGWCDVEHGGDGWRVEELPGDSGVEFTHDESVKKYFASSFEWCRKAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 RNLLRNPCGEEDLEGWCDVEHGGDGWRVEELPGDSGVEFTHDESVKKYFASSFEWCRKAQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 VIDLQAEGYWEELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 VIDLQAEGYWEELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVA
              190       200       210       220       230       240

              250       260       270       280       290      
pF1KB6 VPQDSDGGGWMEISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 VPQDSDGGGWMEISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP
              250       260       270       280       290      

>>XP_006710634 (OMIM: 605647) PREDICTED: F-box only prot  (293 aa)
 initn: 835 init1: 299 opt: 895  Z-score: 880.3  bits: 170.9 E(85289): 2.7e-42
Smith-Waterman score: 895; 50.2% identity (72.9% similar) in 255 aa overlap (42-296:8-259)

              20        30        40        50        60        70 
pF1KB6 QPEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQAC
                                     ::   ..:::: .::.... .:: .:.  :
XP_006                        MDAPHSKAALDSINELPENILLELFTHVPARQLLLNC
                                      10        20        30       

              80        90       100       110       120       130 
pF1KB6 RLVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRRRNLLRNPCGEE
       ::::  :..:.:   ::  :: .::.. .   .   : :. :::: . .::::::::.::
XP_006 RLVCSLWRDLIDLMTLWKRKCLREGFITKDWDQPVAD-WKIFYFLRSLHRNLLRNPCAEE
        40        50        60        70         80        90      

             140       150       160       170       180       190 
pF1KB6 DLEGWCDVEHGGDGWRVEELPGDSGVEFTHDESVKKYFASSFEWCRKAQVIDLQAEGYWE
       :. .:    .::: :.:: :::  :..:  : .:::::..:.: : :.:..:: ::::::
XP_006 DMFAWQIDFNGGDRWKVESLPGAHGTDFP-DPKVKKYFVTSYEMCLKSQLVDLVAEGYWE
        100       110       120        130       140       150     

             200       210       220       230       240       250 
pF1KB6 ELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVAVPQDSDGGGWM
       ::::: .: ::::::...:.: :: :.: :.: :    ::: :    :.. :. ... : 
XP_006 ELLDTFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTI-QQWNNATWT
         160       170       180       190       200        210    

             260       270       280       290                     
pF1KB6 EISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP               
       :.:.::.::  :::.. :.:::.:. :: ::.: ::::::. : :               
XP_006 EVSYTFSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQ
          220       230       240       250       260       270    

XP_006 KHGQEEAAQSPYRAVVQIF
          280       290   

>>XP_005263506 (OMIM: 605647) PREDICTED: F-box only prot  (293 aa)
 initn: 835 init1: 299 opt: 895  Z-score: 880.3  bits: 170.9 E(85289): 2.7e-42
Smith-Waterman score: 895; 50.2% identity (72.9% similar) in 255 aa overlap (42-296:8-259)

              20        30        40        50        60        70 
pF1KB6 QPEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQAC
                                     ::   ..:::: .::.... .:: .:.  :
XP_005                        MDAPHSKAALDSINELPENILLELFTHVPARQLLLNC
                                      10        20        30       

              80        90       100       110       120       130 
pF1KB6 RLVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRRRNLLRNPCGEE
       ::::  :..:.:   ::  :: .::.. .   .   : :. :::: . .::::::::.::
XP_005 RLVCSLWRDLIDLMTLWKRKCLREGFITKDWDQPVAD-WKIFYFLRSLHRNLLRNPCAEE
        40        50        60        70         80        90      

             140       150       160       170       180       190 
pF1KB6 DLEGWCDVEHGGDGWRVEELPGDSGVEFTHDESVKKYFASSFEWCRKAQVIDLQAEGYWE
       :. .:    .::: :.:: :::  :..:  : .:::::..:.: : :.:..:: ::::::
XP_005 DMFAWQIDFNGGDRWKVESLPGAHGTDFP-DPKVKKYFVTSYEMCLKSQLVDLVAEGYWE
        100       110       120        130       140       150     

             200       210       220       230       240       250 
pF1KB6 ELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVAVPQDSDGGGWM
       ::::: .: ::::::...:.: :: :.: :.: :    ::: :    :.. :. ... : 
XP_005 ELLDTFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTI-QQWNNATWT
         160       170       180       190       200        210    

             260       270       280       290                     
pF1KB6 EISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP               
       :.:.::.::  :::.. :.:::.:. :: ::.: ::::::. : :               
XP_005 EVSYTFSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQ
          220       230       240       250       260       270    

XP_005 KHGQEEAAQSPYRAVVQIF
          280       290   

>>XP_011539534 (OMIM: 605647) PREDICTED: F-box only prot  (293 aa)
 initn: 835 init1: 299 opt: 895  Z-score: 880.3  bits: 170.9 E(85289): 2.7e-42
Smith-Waterman score: 895; 50.2% identity (72.9% similar) in 255 aa overlap (42-296:8-259)

              20        30        40        50        60        70 
pF1KB6 QPEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQAC
                                     ::   ..:::: .::.... .:: .:.  :
XP_011                        MDAPHSKAALDSINELPENILLELFTHVPARQLLLNC
                                      10        20        30       

              80        90       100       110       120       130 
pF1KB6 RLVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRRRNLLRNPCGEE
       ::::  :..:.:   ::  :: .::.. .   .   : :. :::: . .::::::::.::
XP_011 RLVCSLWRDLIDLMTLWKRKCLREGFITKDWDQPVAD-WKIFYFLRSLHRNLLRNPCAEE
        40        50        60        70         80        90      

             140       150       160       170       180       190 
pF1KB6 DLEGWCDVEHGGDGWRVEELPGDSGVEFTHDESVKKYFASSFEWCRKAQVIDLQAEGYWE
       :. .:    .::: :.:: :::  :..:  : .:::::..:.: : :.:..:: ::::::
XP_011 DMFAWQIDFNGGDRWKVESLPGAHGTDFP-DPKVKKYFVTSYEMCLKSQLVDLVAEGYWE
        100       110       120        130       140       150     

             200       210       220       230       240       250 
pF1KB6 ELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVAVPQDSDGGGWM
       ::::: .: ::::::...:.: :: :.: :.: :    ::: :    :.. :. ... : 
XP_011 ELLDTFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTI-QQWNNATWT
         160       170       180       190       200        210    

             260       270       280       290                     
pF1KB6 EISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP               
       :.:.::.::  :::.. :.:::.:. :: ::.: ::::::. : :               
XP_011 EVSYTFSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQ
          220       230       240       250       260       270    

XP_011 KHGQEEAAQSPYRAVVQIF
          280       290   

>>XP_016856496 (OMIM: 605647) PREDICTED: F-box only prot  (293 aa)
 initn: 835 init1: 299 opt: 895  Z-score: 880.3  bits: 170.9 E(85289): 2.7e-42
Smith-Waterman score: 895; 50.2% identity (72.9% similar) in 255 aa overlap (42-296:8-259)

              20        30        40        50        60        70 
pF1KB6 QPEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQAC
                                     ::   ..:::: .::.... .:: .:.  :
XP_016                        MDAPHSKAALDSINELPENILLELFTHVPARQLLLNC
                                      10        20        30       

              80        90       100       110       120       130 
pF1KB6 RLVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRRRNLLRNPCGEE
       ::::  :..:.:   ::  :: .::.. .   .   : :. :::: . .::::::::.::
XP_016 RLVCSLWRDLIDLMTLWKRKCLREGFITKDWDQPVAD-WKIFYFLRSLHRNLLRNPCAEE
        40        50        60        70         80        90      

             140       150       160       170       180       190 
pF1KB6 DLEGWCDVEHGGDGWRVEELPGDSGVEFTHDESVKKYFASSFEWCRKAQVIDLQAEGYWE
       :. .:    .::: :.:: :::  :..:  : .:::::..:.: : :.:..:: ::::::
XP_016 DMFAWQIDFNGGDRWKVESLPGAHGTDFP-DPKVKKYFVTSYEMCLKSQLVDLVAEGYWE
        100       110       120        130       140       150     

             200       210       220       230       240       250 
pF1KB6 ELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVAVPQDSDGGGWM
       ::::: .: ::::::...:.: :: :.: :.: :    ::: :    :.. :. ... : 
XP_016 ELLDTFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTI-QQWNNATWT
         160       170       180       190       200        210    

             260       270       280       290                     
pF1KB6 EISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP               
       :.:.::.::  :::.. :.:::.:. :: ::.: ::::::. : :               
XP_016 EVSYTFSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQ
          220       230       240       250       260       270    

XP_016 KHGQEEAAQSPYRAVVQIF
          280       290   

>>XP_005263508 (OMIM: 605647) PREDICTED: F-box only prot  (293 aa)
 initn: 835 init1: 299 opt: 895  Z-score: 880.3  bits: 170.9 E(85289): 2.7e-42
Smith-Waterman score: 895; 50.2% identity (72.9% similar) in 255 aa overlap (42-296:8-259)

              20        30        40        50        60        70 
pF1KB6 QPEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQAC
                                     ::   ..:::: .::.... .:: .:.  :
XP_005                        MDAPHSKAALDSINELPENILLELFTHVPARQLLLNC
                                      10        20        30       

              80        90       100       110       120       130 
pF1KB6 RLVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRRRNLLRNPCGEE
       ::::  :..:.:   ::  :: .::.. .   .   : :. :::: . .::::::::.::
XP_005 RLVCSLWRDLIDLMTLWKRKCLREGFITKDWDQPVAD-WKIFYFLRSLHRNLLRNPCAEE
        40        50        60        70         80        90      

             140       150       160       170       180       190 
pF1KB6 DLEGWCDVEHGGDGWRVEELPGDSGVEFTHDESVKKYFASSFEWCRKAQVIDLQAEGYWE
       :. .:    .::: :.:: :::  :..:  : .:::::..:.: : :.:..:: ::::::
XP_005 DMFAWQIDFNGGDRWKVESLPGAHGTDFP-DPKVKKYFVTSYEMCLKSQLVDLVAEGYWE
        100       110       120        130       140       150     

             200       210       220       230       240       250 
pF1KB6 ELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVAVPQDSDGGGWM
       ::::: .: ::::::...:.: :: :.: :.: :    ::: :    :.. :. ... : 
XP_005 ELLDTFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTI-QQWNNATWT
         160       170       180       190       200        210    

             260       270       280       290                     
pF1KB6 EISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP               
       :.:.::.::  :::.. :.:::.:. :: ::.: ::::::. : :               
XP_005 EVSYTFSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQ
          220       230       240       250       260       270    

XP_005 KHGQEEAAQSPYRAVVQIF
          280       290   

>>XP_005263505 (OMIM: 605647) PREDICTED: F-box only prot  (293 aa)
 initn: 835 init1: 299 opt: 895  Z-score: 880.3  bits: 170.9 E(85289): 2.7e-42
Smith-Waterman score: 895; 50.2% identity (72.9% similar) in 255 aa overlap (42-296:8-259)

              20        30        40        50        60        70 
pF1KB6 QPEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQAC
                                     ::   ..:::: .::.... .:: .:.  :
XP_005                        MDAPHSKAALDSINELPENILLELFTHVPARQLLLNC
                                      10        20        30       

              80        90       100       110       120       130 
pF1KB6 RLVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRRRNLLRNPCGEE
       ::::  :..:.:   ::  :: .::.. .   .   : :. :::: . .::::::::.::
XP_005 RLVCSLWRDLIDLMTLWKRKCLREGFITKDWDQPVAD-WKIFYFLRSLHRNLLRNPCAEE
        40        50        60        70         80        90      

             140       150       160       170       180       190 
pF1KB6 DLEGWCDVEHGGDGWRVEELPGDSGVEFTHDESVKKYFASSFEWCRKAQVIDLQAEGYWE
       :. .:    .::: :.:: :::  :..:  : .:::::..:.: : :.:..:: ::::::
XP_005 DMFAWQIDFNGGDRWKVESLPGAHGTDFP-DPKVKKYFVTSYEMCLKSQLVDLVAEGYWE
        100       110       120        130       140       150     

             200       210       220       230       240       250 
pF1KB6 ELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVAVPQDSDGGGWM
       ::::: .: ::::::...:.: :: :.: :.: :    ::: :    :.. :. ... : 
XP_005 ELLDTFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTI-QQWNNATWT
         160       170       180       190       200        210    

             260       270       280       290                     
pF1KB6 EISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP               
       :.:.::.::  :::.. :.:::.:. :: ::.: ::::::. : :               
XP_005 EVSYTFSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQ
          220       230       240       250       260       270    

XP_005 KHGQEEAAQSPYRAVVQIF
          280       290   

>>NP_060908 (OMIM: 605647) F-box only protein 6 [Homo sa  (293 aa)
 initn: 835 init1: 299 opt: 895  Z-score: 880.3  bits: 170.9 E(85289): 2.7e-42
Smith-Waterman score: 895; 50.2% identity (72.9% similar) in 255 aa overlap (42-296:8-259)

              20        30        40        50        60        70 
pF1KB6 QPEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQAC
                                     ::   ..:::: .::.... .:: .:.  :
NP_060                        MDAPHSKAALDSINELPENILLELFTHVPARQLLLNC
                                      10        20        30       

              80        90       100       110       120       130 
pF1KB6 RLVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRRRNLLRNPCGEE
       ::::  :..:.:   ::  :: .::.. .   .   : :. :::: . .::::::::.::
NP_060 RLVCSLWRDLIDLMTLWKRKCLREGFITKDWDQPVAD-WKIFYFLRSLHRNLLRNPCAEE
        40        50        60        70         80        90      

             140       150       160       170       180       190 
pF1KB6 DLEGWCDVEHGGDGWRVEELPGDSGVEFTHDESVKKYFASSFEWCRKAQVIDLQAEGYWE
       :. .:    .::: :.:: :::  :..:  : .:::::..:.: : :.:..:: ::::::
NP_060 DMFAWQIDFNGGDRWKVESLPGAHGTDFP-DPKVKKYFVTSYEMCLKSQLVDLVAEGYWE
        100       110       120        130       140       150     

             200       210       220       230       240       250 
pF1KB6 ELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVAVPQDSDGGGWM
       ::::: .: ::::::...:.: :: :.: :.: :    ::: :    :.. :. ... : 
NP_060 ELLDTFRPDIVVKDWFAARADCGCTYQLKVQLASADYFVLASFEPPPVTI-QQWNNATWT
         160       170       180       190       200        210    

             260       270       280       290                     
pF1KB6 EISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP               
       :.:.::.::  :::.. :.:::.:. :: ::.: ::::::. : :               
NP_060 EVSYTFSDYPRGVRYILFQHGGRDTQYWAGWYGPRVTNSSIVVSPKMTRNQASSEAQPGQ
          220       230       240       250       260       270    

NP_060 KHGQEEAAQSPYRAVVQIF
          280       290   

>>NP_001291720 (OMIM: 609111) F-box only protein 44 isof  (255 aa)
 initn: 672 init1: 298 opt: 867  Z-score: 854.0  bits: 165.8 E(85289): 7.9e-41
Smith-Waterman score: 867; 49.4% identity (73.7% similar) in 255 aa overlap (43-296:2-252)

             20        30        40        50        60        70  
pF1KB6 PEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQACR
                                     :.. ..:::: .::.... .:: .:.  ::
NP_001                              MAVGNINELPENILLELFTHVPARQLLLNCR
                                            10        20        30 

             80        90       100       110       120       130  
pF1KB6 LVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRRRNLLRNPCGEED
       :::  :..:.: . ::  :: .::.. :   .   : :. :::: . .::::.:::.:: 
NP_001 LVCSLWRDLIDLVTLWKRKCLREGFITEDWDQPVAD-WKIFYFLRSLHRNLLHNPCAEEG
              40        50        60         70        80        90

             140       150       160       170       180       190 
pF1KB6 LEGWC-DVEHGGDGWRVEELPGDSGVEFTHDESVKKYFASSFEWCRKAQVIDLQAEGYWE
       .: :  :: .::: :.::.:  :.  :: .:. :::::..:.  : :.::.::.::::::
NP_001 FEFWSLDV-NGGDEWKVEDLSRDQRKEFPNDQ-VKKYFVTSYYTCLKSQVVDLKAEGYWE
               100       110       120        130       140        

             200       210       220       230       240       250 
pF1KB6 ELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVAVPQDSDGGGWM
       ::.:::.: : ::::...: : :  :.: :.:::  .  :. :.   ... : ::.  : 
NP_001 ELMDTTRPDIEVKDWFAARPDCGSKYQLCVQLLSSAHAPLGTFQPDPATIQQKSDAK-WR
      150       160       170       180       190       200        

             260       270       280       290         
pF1KB6 EISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP   
       :.::::..: ::::.. :.::: :. :: ::.: ::::::. . :   
NP_001 EVSHTFSNYPPGVRYIWFQHGGVDTHYWAGWYGPRVTNSSITIGPPLP
       210       220       230       240       250     

>>XP_016858332 (OMIM: 609111) PREDICTED: F-box only prot  (255 aa)
 initn: 672 init1: 298 opt: 867  Z-score: 854.0  bits: 165.8 E(85289): 7.9e-41
Smith-Waterman score: 867; 49.4% identity (73.7% similar) in 255 aa overlap (43-296:2-252)

             20        30        40        50        60        70  
pF1KB6 PEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQACR
                                     :.. ..:::: .::.... .:: .:.  ::
XP_016                              MAVGNINELPENILLELFTHVPARQLLLNCR
                                            10        20        30 

             80        90       100       110       120       130  
pF1KB6 LVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRRRNLLRNPCGEED
       :::  :..:.: . ::  :: .::.. :   .   : :. :::: . .::::.:::.:: 
XP_016 LVCSLWRDLIDLVTLWKRKCLREGFITEDWDQPVAD-WKIFYFLRSLHRNLLHNPCAEEG
              40        50        60         70        80        90

             140       150       160       170       180       190 
pF1KB6 LEGWC-DVEHGGDGWRVEELPGDSGVEFTHDESVKKYFASSFEWCRKAQVIDLQAEGYWE
       .: :  :: .::: :.::.:  :.  :: .:. :::::..:.  : :.::.::.::::::
XP_016 FEFWSLDV-NGGDEWKVEDLSRDQRKEFPNDQ-VKKYFVTSYYTCLKSQVVDLKAEGYWE
               100       110       120        130       140        

             200       210       220       230       240       250 
pF1KB6 ELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVAVPQDSDGGGWM
       ::.:::.: : ::::...: : :  :.: :.:::  .  :. :.   ... : ::.  : 
XP_016 ELMDTTRPDIEVKDWFAARPDCGSKYQLCVQLLSSAHAPLGTFQPDPATIQQKSDAK-WR
      150       160       170       180       190       200        

             260       270       280       290         
pF1KB6 EISHTFTDYGPGVRFVRFEHGGQDSVYWKGWFGARVTNSSVWVEP   
       :.::::..: ::::.. :.::: :. :: ::.: ::::::. . :   
XP_016 EVSHTFSNYPPGVRYIWFQHGGVDTHYWAGWYGPRVTNSSITIGPPLP
       210       220       230       240       250     




296 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:38:16 2016 done: Fri Nov  4 20:38:17 2016
 Total Scan time:  7.780 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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