Result of FASTA (ccds) for pF1KB6344
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6344, 291 aa
  1>>>pF1KB6344 291 - 291 aa - 291 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3456+/-0.000831; mu= 15.6823+/- 0.050
 mean_var=80.5990+/-15.557, 0's: 0 Z-trim(108.5): 51  B-trim: 100 in 1/48
 Lambda= 0.142860
 statistics sampled from 10205 (10259) to 10205 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.315), width:  16
 Scan time:  2.540

The best scores are:                                      opt bits E(32554)
CCDS31224.1 DUSP13 gene_id:51207|Hs108|chr10       ( 248) 1311 279.5 1.7e-75
CCDS7346.1 DUSP13 gene_id:51207|Hs108|chr10        ( 198) 1294 276.0 1.6e-74
CCDS31223.1 DUPD1 gene_id:338599|Hs108|chr10       ( 220)  609 134.8 5.5e-32
CCDS6092.1 DUSP26 gene_id:78986|Hs108|chr8         ( 211)  590 130.9   8e-31
CCDS53542.1 DUSP13 gene_id:51207|Hs108|chr10       ( 188)  513 115.0 4.4e-26
CCDS30932.1 DUSP27 gene_id:92235|Hs108|chr1        (1158)  502 113.3 8.5e-25
CCDS11469.1 DUSP3 gene_id:1845|Hs108|chr17         ( 185)  433 98.5   4e-21
CCDS6073.1 DUSP4 gene_id:1846|Hs108|chr8           ( 303)  269 64.8 8.7e-11
CCDS11320.1 DUSP14 gene_id:11072|Hs108|chr17       ( 198)  266 64.1 9.6e-11


>>CCDS31224.1 DUSP13 gene_id:51207|Hs108|chr10            (248 aa)
 initn: 1312 init1: 1294 opt: 1311  Z-score: 1469.0  bits: 279.5 E(32554): 1.7e-75
Smith-Waterman score: 1311; 91.4% identity (94.6% similar) in 222 aa overlap (72-291:28-248)

              50        60        70        80        90           
pF1KB6 SIWLLLAPTPPLSHCLQSPQKQHQVCGDRRLKAGSTNCPSEKCTAWARY--SHRMDSLQK
                                     :.::...: :.   .:     .  ::::::
CCDS31    MAETSLPELGGEDKATPCPSILELEELLRAGKSSC-SRVDEVWPNLFIGDAMDSLQK
                  10        20        30         40        50      

     100       110       120       130       140       150         
pF1KB6 QDLRRPKIHGAVQASPYQPPTLASLQRLLWVRQAATLNHIDEVWPSLFLGDAYAARDKSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QDLRRPKIHGAVQASPYQPPTLASLQRLLWVRQAATLNHIDEVWPSLFLGDAYAARDKSK
         60        70        80        90       100       110      

     160       170       180       190       200       210         
pF1KB6 LIQLGITHVVNAAAGKFQVDTGAKFYRGMSLEYYGIEADDNPFFDLSVYFLPVARYIRAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LIQLGITHVVNAAAGKFQVDTGAKFYRGMSLEYYGIEADDNPFFDLSVYFLPVARYIRAA
        120       130       140       150       160       170      

     220       230       240       250       260       270         
pF1KB6 LSVPQGRVLVHCAMGVSRSATLVLAFLMIYENMTLVEAIQTVQAHRNICPNSGFLRQLQV
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
CCDS31 LSVPQGRVLVHCAMGVSRSATLVLAFLMICENMTLVEAIQTVQAHRNICPNSGFLRQLQV
        180       190       200       210       220       230      

     280       290 
pF1KB6 LDNRLGRETGRF
       ::::::::::::
CCDS31 LDNRLGRETGRF
        240        

>>CCDS7346.1 DUSP13 gene_id:51207|Hs108|chr10             (198 aa)
 initn: 1294 init1: 1294 opt: 1294  Z-score: 1451.4  bits: 276.0 E(32554): 1.6e-74
Smith-Waterman score: 1294; 99.5% identity (99.5% similar) in 198 aa overlap (94-291:1-198)

            70        80        90       100       110       120   
pF1KB6 HQVCGDRRLKAGSTNCPSEKCTAWARYSHRMDSLQKQDLRRPKIHGAVQASPYQPPTLAS
                                     ::::::::::::::::::::::::::::::
CCDS73                               MDSLQKQDLRRPKIHGAVQASPYQPPTLAS
                                             10        20        30

           130       140       150       160       170       180   
pF1KB6 LQRLLWVRQAATLNHIDEVWPSLFLGDAYAARDKSKLIQLGITHVVNAAAGKFQVDTGAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LQRLLWVRQAATLNHIDEVWPSLFLGDAYAARDKSKLIQLGITHVVNAAAGKFQVDTGAK
               40        50        60        70        80        90

           190       200       210       220       230       240   
pF1KB6 FYRGMSLEYYGIEADDNPFFDLSVYFLPVARYIRAALSVPQGRVLVHCAMGVSRSATLVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FYRGMSLEYYGIEADDNPFFDLSVYFLPVARYIRAALSVPQGRVLVHCAMGVSRSATLVL
              100       110       120       130       140       150

           250       260       270       280       290 
pF1KB6 AFLMIYENMTLVEAIQTVQAHRNICPNSGFLRQLQVLDNRLGRETGRF
       ::::: ::::::::::::::::::::::::::::::::::::::::::
CCDS73 AFLMICENMTLVEAIQTVQAHRNICPNSGFLRQLQVLDNRLGRETGRF
              160       170       180       190        

>>CCDS31223.1 DUPD1 gene_id:338599|Hs108|chr10            (220 aa)
 initn: 596 init1: 554 opt: 609  Z-score: 687.8  bits: 134.8 E(32554): 5.5e-32
Smith-Waterman score: 609; 48.9% identity (75.3% similar) in 186 aa overlap (105-290:22-206)

           80        90       100       110       120       130    
pF1KB6 GSTNCPSEKCTAWARYSHRMDSLQKQDLRRPKIHGAVQASPYQPPTLASLQRLLWVRQAA
                                     ::..   .   :  :    :.::.: . . 
CCDS31          MTSGEVKTSLKNAYSSAKRLSPKMEEEGEEEDYCTPGAFELERLFW-KGSP
                        10        20        30        40         50

          140       150       160       170       180       190    
pF1KB6 TLNHIDEVWPSLFLGDAYAARDKSKLIQLGITHVVNAAAGKFQVDTGAKFYRGMSLEYYG
         .:..::::.:..::  .: :. .: . :.:::.::: :...::::  .:: :...:.:
CCDS31 QYTHVNEVWPKLYIGDEATALDRYRLQKAGFTHVLNAAHGRWNVDTGPDYYRDMDIQYHG
               60        70        80        90       100       110

          200       210       220       230       240       250    
pF1KB6 IEADDNPFFDLSVYFLPVARYIRAALSVPQGRVLVHCAMGVSRSATLVLAFLMIYENMTL
       .:::: : :::::.: :.: .:  :::  ....::::.:: :::::::::.:::...:::
CCDS31 VEADDLPTFDLSVFFYPAAAFIDRALSDDHSKILVHCVMGRSRSATLVLAYLMIHKDMTL
              120       130       140       150       160       170

          260       270       280       290              
pF1KB6 VEAIQTVQAHRNICPNSGFLRQLQVLDNRLGRETGRF             
       :.::: :  .: . :: :::.::. ::..: ..  :              
CCDS31 VDAIQQVAKNRCVLPNRGFLKQLRELDKQLVQQRRRSQRQDGEEEDGREL
              180       190       200       210       220

>>CCDS6092.1 DUSP26 gene_id:78986|Hs108|chr8              (211 aa)
 initn: 564 init1: 410 opt: 590  Z-score: 666.9  bits: 130.9 E(32554): 8e-31
Smith-Waterman score: 590; 47.1% identity (73.8% similar) in 210 aa overlap (79-284:2-205)

       50        60        70        80        90       100        
pF1KB6 PTPPLSHCLQSPQKQHQVCGDRRLKAGSTNCPSEKCTAWARYSHRMDSLQKQDLRRP-KI
                                     ::..    :: ..  :  ..... : : . 
CCDS60                              MCPGNWL--WASMTF-MARFSRSSSRSPVRT
                                              10         20        

       110        120         130       140       150       160    
pF1KB6 HGAVQASP-YQPPTLA--SLQRLLWVRQAATLNHIDEVWPSLFLGDAYAARDKSKLIQLG
       .:...  :  : : :    :.:::.. ..:  :: :::::.:.:::   : .. .: .::
CCDS60 RGTLEEMPTVQHPFLNVFELERLLYTGKTAC-NHADEVWPGLYLGDQDMANNRRELRRLG
       30        40        50         60        70        80       

          170       180       190       200       210       220    
pF1KB6 ITHVVNAAAGKFQVDTGAKFYRGMSLEYYGIEADDNPFFDLSVYFLPVARYIRAALSVPQ
       ::::.::. ....    :  :.:....: :.:: :.: ::.:..:  .: .:. ::: : 
CCDS60 ITHVLNASHSRWRGTPEA--YEGLGIRYLGVEAHDSPAFDMSIHFQTAADFIHRALSQPG
        90       100         110       120       130       140     

          230       240       250       260       270       280    
pF1KB6 GRVLVHCAMGVSRSATLVLAFLMIYENMTLVEAIQTVQAHRNICPNSGFLRQLQVLDNRL
       :..:::::.:::::::::::.::.:...::::::. :. ::.: :: :::::: .:: ::
CCDS60 GKILVHCAVGVSRSATLVLAYLMLYHHLTLVEAIKKVKDHRGIIPNRGFLRQLLALDRRL
         150       160       170       180       190       200     

          290 
pF1KB6 GRETGRF
              
CCDS60 RQGLEA 
         210  

>>CCDS53542.1 DUSP13 gene_id:51207|Hs108|chr10            (188 aa)
 initn: 481 init1: 289 opt: 513  Z-score: 581.8  bits: 115.0 E(32554): 4.4e-26
Smith-Waterman score: 513; 45.7% identity (74.2% similar) in 186 aa overlap (105-290:7-187)

           80        90       100       110       120       130    
pF1KB6 GSTNCPSEKCTAWARYSHRMDSLQKQDLRRPKIHGAVQASPYQPPTLASLQRLLWVRQAA
                                     :.. :  .:.:   :..  :..:: . ...
CCDS53                         MAETSLPELGGEDKATPC--PSILELEELLRAGKSS
                                       10          20        30    

          140       150       160       170       180       190    
pF1KB6 TLNHIDEVWPSLFLGDAYAARDKSKLIQLGITHVVNAAAGKFQVDTGAKFYRGMSLEYYG
         ...:::::.::.::: .: .. .: .::::::.:::   .  . :  :: : :. : :
CCDS53 C-SRVDEVWPNLFIGDAATANNRFELWKLGITHVLNAAHKGLYCQGGPDFY-GSSVSYLG
            40        50        60        70        80         90  

          200       210       220       230       240       250    
pF1KB6 IEADDNPFFDLSVYFLPVARYIRAALSVPQGRVLVHCAMGVSRSATLVLAFLMIYENMTL
       . : : : ::.:.::  .: .:. ::..: ..:::::..:::::::::::.::... ..:
CCDS53 VPAHDLPDFDISAYFSSAADFIHRALNTPGAKVLVHCVVGVSRSATLVLAYLMLHQRLSL
            100       110       120       130       140       150  

          260       270       280       290 
pF1KB6 VEAIQTVQAHRNICPNSGFLRQLQVLDNRLGRETGRF
        .:. ::. :: . :: :::.::  ::..: : .:. 
CCDS53 RQAVITVRQHRWVFPNRGFLHQLCRLDQQL-RGAGQS
            160       170       180         

>>CCDS30932.1 DUSP27 gene_id:92235|Hs108|chr1             (1158 aa)
 initn: 481 init1: 337 opt: 502  Z-score: 558.7  bits: 113.3 E(32554): 8.5e-25
Smith-Waterman score: 502; 45.7% identity (76.0% similar) in 175 aa overlap (114-287:108-281)

            90       100       110       120        130       140  
pF1KB6 CTAWARYSHRMDSLQKQDLRRPKIHGAVQASPYQPPTLASLQR-LLWVRQAATLNHIDEV
                                     : :. : . .::: :.  :: :  :..:::
CCDS30 DAECPGMLESAEQLLVEDLYNRVREKMDDTSLYNTPCVLDLQRALVQDRQEAPWNEVDEV
        80        90       100       110       120       130       

            150       160       170       180       190       200  
pF1KB6 WPSLFLGDAYAARDKSKLIQLGITHVVNAAAGKFQVDTGAKFYRGMSLEYYGIEADDNPF
       ::..:...  .: .:..: .:::::..::: :   : :: .:: :. ..: :.:.:: : 
CCDS30 WPNVFIAEKSVAVNKGRLKRLGITHILNAAHGT-GVYTGPEFYTGLEIQYLGVEVDDFPE
       140       150       160       170        180       190      

            210       220       230       240       250       260  
pF1KB6 FDLSVYFLPVARYIRAALSVPQGRVLVHCAMGVSRSATLVLAFLMIYENMTLVEAIQTVQ
        :.: .:  .....  :: . .:.:::   ::.::::.::.:.:::..::...::..::.
CCDS30 VDISQHFRKASEFLDEALLTYRGKVLVSSEMGISRSAVLVVAYLMIFHNMAILEALMTVR
        200       210       220       230       240       250      

            270       280       290                                
pF1KB6 AHRNICPNSGFLRQLQVLDNRLGRETGRF                               
        .: : :: :::.::. :...: .:                                   
CCDS30 KKRAIYPNEGFLKQLRELNEKLMEEREEDYGREGGSAEAEEGEGTGSMLGARVHALTVEE
        260       270       280       290       300       310      

>>CCDS11469.1 DUSP3 gene_id:1845|Hs108|chr17              (185 aa)
 initn: 433 init1: 304 opt: 433  Z-score: 492.8  bits: 98.5 E(32554): 4e-21
Smith-Waterman score: 433; 47.3% identity (76.0% similar) in 150 aa overlap (140-287:31-180)

     110       120       130       140       150       160         
pF1KB6 AVQASPYQPPTLASLQRLLWVRQAATLNHIDEVWPSLFLGDAYAARDKSKLIQLGITHVV
                                     .:: : ...:.: .:.:  :: .::::::.
CCDS11 MSGSFELSVQDLNDLLSDGSGCYSLPSQPCNEVTPRIYVGNASVAQDIPKLQKLGITHVL
               10        20        30        40        50        60

     170         180       190       200       210       220       
pF1KB6 NAAAGK--FQVDTGAKFYRGMSLEYYGIEADDNPFFDLSVYFLPVARYIRAALSVPQGRV
       ::: :.  ..:.:.:.::.  .. : ::.:.:.  :.::.::  .: .:  ::.  .:::
CCDS11 NAAEGRSFMHVNTNANFYKDSGITYLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRV
               70        80        90       100       110       120

       230       240       250       260       270       280       
pF1KB6 LVHCAMGVSRSATLVLAFLMIYENMTLVEAIQTVQAHRNICPNSGFLRQLQVLDNRLGRE
       ::::  : ::: :::.:.::. ..: .  :.. :. .:.: ::.::: ::  :..::..:
CCDS11 LVHCREGYSRSPTLVIAYLMMRQKMDVKSALSIVRQNREIGPNDGFLAQLCQLNDRLAKE
              130       140       150       160       170       180

       290  
pF1KB6 TGRF 
            
CCDS11 GKLKP
            

>>CCDS6073.1 DUSP4 gene_id:1846|Hs108|chr8                (303 aa)
 initn: 217 init1: 149 opt: 269  Z-score: 307.1  bits: 64.8 E(32554): 8.7e-11
Smith-Waterman score: 271; 32.7% identity (59.4% similar) in 217 aa overlap (74-284:42-243)

            50        60        70        80         90       100  
pF1KB6 WLLLAPTPPLSHCLQSPQKQHQVCGDRRLKAGSTNCP-SEKCTAWARYSHRMDSLQKQDL
                                     :: . :  ::.  .. :.: ..  . .   
CCDS60 FAEHSRSPRRTGRDCKPVRAPSMALGVSQLAGRSRCLCSESQGGYERFSSEYPEFCS---
              20        30        40        50        60           

            110       120       130       140           150        
pF1KB6 RRPKIHGAVQASPYQPPTLASLQRLLWVRQAATLNHID----EVWPSLFLGDAYAARDKS
        . :  .:.   :  ::. :.    :   . .:  : .    :. : :.::.:: :  ..
CCDS60 -KTKALAAIP--PPVPPS-ATEPLDLGCSSCGTPLHDQGGPVEILPFLYLGSAYHAARRD
        70          80         90       100       110       120    

      160       170       180       190       200       210        
pF1KB6 KLIQLGITHVVNAAAGKFQVDTGAKFYRGMSLEYYGIEADDNPFFDLSVYFLPVARYIRA
        :  :::: ..:...     :   .: .:   .:  : ..::   :.: .:. . .:: :
CCDS60 MLDALGITALLNVSS-----DCPNHF-EGH-YQYKCIPVEDNHKADISSWFMEAIEYIDA
          130            140         150       160       170       

      220       230       240       250       260        270       
pF1KB6 ALSVPQGRVLVHCAMGVSRSATLVLAFLMIYENMTLVEAIQTVQAHRNI-CPNSGFLRQL
       . .  .:::::::  :.:::::. ::.::. . . : ::.. :. .:.:  :: .:. ::
CCDS60 VKDC-RGRVLVHCQAGISRSATICLAYLMMKKRVRLEEAFEFVKQRRSIISPNFSFMGQL
       180        190       200       210       220       230      

       280       290                                               
pF1KB6 QVLDNRLGRETGRF                                              
         .....                                                     
CCDS60 LQFESQVLATSCAAEAASPSGPLRERGKTPATPTSQFVFSFPVSVGVHSAPSSLPYLHSP
        240       250       260       270       280       290      

>>CCDS11320.1 DUSP14 gene_id:11072|Hs108|chr17            (198 aa)
 initn: 203 init1: 146 opt: 266  Z-score: 306.3  bits: 64.1 E(32554): 9.6e-11
Smith-Waterman score: 266; 38.2% identity (62.5% similar) in 152 aa overlap (139-288:27-170)

      110       120       130       140       150       160        
pF1KB6 GAVQASPYQPPTLASLQRLLWVRQAATLNHIDEVWPSLFLGDAYAARDKSKLIQLGITHV
                                     : ..  ::::: . .: ..  :   ::: .
CCDS11     MSSRGHSTLPRTLMAPRMISEGDIGGIAQITSSLFLGRGSVASNRHLLQARGITCI
                   10        20        30        40        50      

      170       180       190       200       210       220        
pF1KB6 VNAAAGKFQVDTGAKFYRGMSLEYYGIEADDNPFFDLSVYFLPVARYIRAALSVPQGRVL
       :::.   ... .    .   ..::  .   : :   ...::  ::  :.. .:  .: .:
CCDS11 VNAT---IEIPN----FNWPQFEYVKVPLADMPHAPIGLYFDTVADKIHS-VSRKHGATL
         60               70        80        90        100        

      230       240       250       260        270       280       
pF1KB6 VHCAMGVSRSATLVLAFLMIYENMTLVEAIQTVQAHRNIC-PNSGFLRQLQVLDNRL-GR
       :::: :::::::: .:.:: ..:. :.:: . :.:.: .  :: :: :::   . .: :.
CCDS11 VHCAAGVSRSATLCIAYLMKFHNVCLLEAYNWVKARRPVIRPNVGFWRQLIDYERQLFGK
      110       120       130       140       150       160        

        290                          
pF1KB6 ETGRF                         
        :                            
CCDS11 STVKMVQTPYGIVPDVYEKESRHLMPYWGI
      170       180       190        




291 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:32:53 2016 done: Fri Nov  4 20:32:54 2016
 Total Scan time:  2.540 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com