FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0503, 220 aa
  1>>>pF1KE0503 220 - 220 aa - 220 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9496+/-0.000785; mu= 6.6662+/- 0.047
 mean_var=116.0097+/-22.695, 0's: 0 Z-trim(111.6): 17  B-trim: 13 in 1/51
 Lambda= 0.119077
 statistics sampled from 12461 (12469) to 12461 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.756), E-opt: 0.2 (0.383), width:  16
 Scan time:  2.240

The best scores are:                                      opt bits E(32554)
CCDS13753.1 DGCR6 gene_id:8214|Hs108|chr22         ( 220) 1438 257.2 5.8e-69
CCDS13778.1 DGCR6L gene_id:85359|Hs108|chr22       ( 220) 1393 249.5 1.2e-66


>>CCDS13753.1 DGCR6 gene_id:8214|Hs108|chr22              (220 aa)
 initn: 1438 init1: 1438 opt: 1438  Z-score: 1351.6  bits: 257.2 E(32554): 5.8e-69
Smith-Waterman score: 1438; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220)

               10        20        30        40        50        60
pF1KE0 MERYAGALEEVADGARQQERHYQLLSALQSLVKELPSSFQQRLSYTTLSDLALALLDGTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MERYAGALEEVADGARQQERHYQLLSALQSLVKELPSSFQQRLSYTTLSDLALALLDGTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVLQAAQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVLQAAQQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 RELEAVEHRIREEQRAMDQKIVLELDRKVADQQSTLEKAGVAGFYVTTNPQELMLQMNLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RELEAVEHRIREEQRAMDQKIVLELDRKVADQQSTLEKAGVAGFYVTTNPQELMLQMNLL
              130       140       150       160       170       180

              190       200       210       220
pF1KE0 ELIRKLQQRGCWAGKAALGLGGPWQLPAAQCDQKGSPVPP
       ::::::::::::::::::::::::::::::::::::::::
CCDS13 ELIRKLQQRGCWAGKAALGLGGPWQLPAAQCDQKGSPVPP
              190       200       210       220

>>CCDS13778.1 DGCR6L gene_id:85359|Hs108|chr22            (220 aa)
 initn: 1393 init1: 1393 opt: 1393  Z-score: 1309.8  bits: 249.5 E(32554): 1.2e-66
Smith-Waterman score: 1393; 97.3% identity (99.1% similar) in 220 aa overlap (1-220:1-220)

               10        20        30        40        50        60
pF1KE0 MERYAGALEEVADGARQQERHYQLLSALQSLVKELPSSFQQRLSYTTLSDLALALLDGTV
       :::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MERYAAALEEVADGARQQERHYQLLSALQSLVKELPSSFQQRLSYTTLSDLALALLDGTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVLQAAQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS13 FEIVQGLLEIQHLTEKSLYNQRLRLQNEHRVLRQALRQKHQEAQQACRPHNLPVVQAAQQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 RELEAVEHRIREEQRAMDQKIVLELDRKVADQQSTLEKAGVAGFYVTTNPQELMLQMNLL
       :::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
CCDS13 RELEAVEHRIREEQRAMDQKIILELDRKVADQQSTLEKAGVAGFYVTTNPQELMLQMNLL
              130       140       150       160       170       180

              190       200       210       220
pF1KE0 ELIRKLQQRGCWAGKAALGLGGPWQLPAAQCDQKGSPVPP
       ::::::::::: ::.:::::::::: ::::::::::::::
CCDS13 ELIRKLQQRGCRAGNAALGLGGPWQSPAAQCDQKGSPVPP
              190       200       210       220




220 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 03:53:31 2016 done: Thu Nov  3 03:53:31 2016
 Total Scan time:  2.240 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]