Result of FASTA (omim) for pF1KB7835
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7835, 540 aa
  1>>>pF1KB7835 540 - 540 aa - 540 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.6103+/-0.000428; mu= -2.1975+/- 0.027
 mean_var=193.1965+/-40.109, 0's: 0 Z-trim(117.0): 45  B-trim: 1184 in 1/52
 Lambda= 0.092273
 statistics sampled from 28581 (28626) to 28581 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.336), width:  16
 Scan time: 10.740

The best scores are:                                      opt bits E(85289)
XP_011536701 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 540) 3666 500.8 4.3e-141
NP_001186231 (OMIM: 604909) CCR4-NOT transcription ( 540) 3666 500.8 4.3e-141
NP_001186232 (OMIM: 604909) CCR4-NOT transcription ( 540) 3666 500.8 4.3e-141
NP_055330 (OMIM: 604909) CCR4-NOT transcription co ( 540) 3666 500.8 4.3e-141
XP_006719493 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 531) 3568 487.8 3.6e-137
XP_016874837 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 531) 3568 487.8 3.6e-137
XP_006719492 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 531) 3568 487.8 3.6e-137
XP_016874838 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 531) 3568 487.8 3.6e-137
XP_016874839 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 520) 3538 483.8 5.6e-136
XP_016874841 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 520) 3538 483.8 5.6e-136
XP_011536702 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 520) 3538 483.8 5.6e-136
XP_016874840 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 520) 3538 483.8 5.6e-136
XP_006719495 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 479) 2417 334.5 4.3e-91
XP_016874843 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 394) 2218 308.0 3.4e-83
XP_016874842 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 394) 2218 308.0 3.4e-83
XP_006719496 (OMIM: 604909) PREDICTED: CCR4-NOT tr ( 403) 2218 308.0 3.5e-83


>>XP_011536701 (OMIM: 604909) PREDICTED: CCR4-NOT transc  (540 aa)
 initn: 3666 init1: 3666 opt: 3666  Z-score: 2654.1  bits: 500.8 E(85289): 4.3e-141
Smith-Waterman score: 3666; 100.0% identity (100.0% similar) in 540 aa overlap (1-540:1-540)

               10        20        30        40        50        60
pF1KB7 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
              490       500       510       520       530       540

>>NP_001186231 (OMIM: 604909) CCR4-NOT transcription com  (540 aa)
 initn: 3666 init1: 3666 opt: 3666  Z-score: 2654.1  bits: 500.8 E(85289): 4.3e-141
Smith-Waterman score: 3666; 100.0% identity (100.0% similar) in 540 aa overlap (1-540:1-540)

               10        20        30        40        50        60
pF1KB7 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
              490       500       510       520       530       540

>>NP_001186232 (OMIM: 604909) CCR4-NOT transcription com  (540 aa)
 initn: 3666 init1: 3666 opt: 3666  Z-score: 2654.1  bits: 500.8 E(85289): 4.3e-141
Smith-Waterman score: 3666; 100.0% identity (100.0% similar) in 540 aa overlap (1-540:1-540)

               10        20        30        40        50        60
pF1KB7 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
              490       500       510       520       530       540

>>NP_055330 (OMIM: 604909) CCR4-NOT transcription comple  (540 aa)
 initn: 3666 init1: 3666 opt: 3666  Z-score: 2654.1  bits: 500.8 E(85289): 4.3e-141
Smith-Waterman score: 3666; 100.0% identity (100.0% similar) in 540 aa overlap (1-540:1-540)

               10        20        30        40        50        60
pF1KB7 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
              490       500       510       520       530       540

>>XP_006719493 (OMIM: 604909) PREDICTED: CCR4-NOT transc  (531 aa)
 initn: 3567 init1: 3567 opt: 3568  Z-score: 2583.7  bits: 487.8 E(85289): 3.6e-137
Smith-Waterman score: 3568; 99.4% identity (99.6% similar) in 529 aa overlap (12-540:3-531)

               10        20        30        40        50        60
pF1KB7 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
                  :.  :::::::::::::::::::::::::::::::::::::::::::::
XP_006          MLKEVAQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
                        10        20        30        40        50 

               70        80        90       100       110       120
pF1KB7 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
              60        70        80        90       100       110 

              130       140       150       160       170       180
pF1KB7 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
             120       130       140       150       160       170 

              190       200       210       220       230       240
pF1KB7 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
             180       190       200       210       220       230 

              250       260       270       280       290       300
pF1KB7 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
             240       250       260       270       280       290 

              310       320       330       340       350       360
pF1KB7 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
             300       310       320       330       340       350 

              370       380       390       400       410       420
pF1KB7 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
             360       370       380       390       400       410 

              430       440       450       460       470       480
pF1KB7 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
             420       430       440       450       460       470 

              490       500       510       520       530       540
pF1KB7 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
             480       490       500       510       520       530 

>>XP_016874837 (OMIM: 604909) PREDICTED: CCR4-NOT transc  (531 aa)
 initn: 3567 init1: 3567 opt: 3568  Z-score: 2583.7  bits: 487.8 E(85289): 3.6e-137
Smith-Waterman score: 3568; 99.4% identity (99.6% similar) in 529 aa overlap (12-540:3-531)

               10        20        30        40        50        60
pF1KB7 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
                  :.  :::::::::::::::::::::::::::::::::::::::::::::
XP_016          MLKEVAQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
                        10        20        30        40        50 

               70        80        90       100       110       120
pF1KB7 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
              60        70        80        90       100       110 

              130       140       150       160       170       180
pF1KB7 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
             120       130       140       150       160       170 

              190       200       210       220       230       240
pF1KB7 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
             180       190       200       210       220       230 

              250       260       270       280       290       300
pF1KB7 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
             240       250       260       270       280       290 

              310       320       330       340       350       360
pF1KB7 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
             300       310       320       330       340       350 

              370       380       390       400       410       420
pF1KB7 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
             360       370       380       390       400       410 

              430       440       450       460       470       480
pF1KB7 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
             420       430       440       450       460       470 

              490       500       510       520       530       540
pF1KB7 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
             480       490       500       510       520       530 

>>XP_006719492 (OMIM: 604909) PREDICTED: CCR4-NOT transc  (531 aa)
 initn: 3567 init1: 3567 opt: 3568  Z-score: 2583.7  bits: 487.8 E(85289): 3.6e-137
Smith-Waterman score: 3568; 99.4% identity (99.6% similar) in 529 aa overlap (12-540:3-531)

               10        20        30        40        50        60
pF1KB7 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
                  :.  :::::::::::::::::::::::::::::::::::::::::::::
XP_006          MLKEVAQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
                        10        20        30        40        50 

               70        80        90       100       110       120
pF1KB7 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
              60        70        80        90       100       110 

              130       140       150       160       170       180
pF1KB7 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
             120       130       140       150       160       170 

              190       200       210       220       230       240
pF1KB7 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
             180       190       200       210       220       230 

              250       260       270       280       290       300
pF1KB7 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
             240       250       260       270       280       290 

              310       320       330       340       350       360
pF1KB7 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
             300       310       320       330       340       350 

              370       380       390       400       410       420
pF1KB7 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
             360       370       380       390       400       410 

              430       440       450       460       470       480
pF1KB7 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
             420       430       440       450       460       470 

              490       500       510       520       530       540
pF1KB7 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
             480       490       500       510       520       530 

>>XP_016874838 (OMIM: 604909) PREDICTED: CCR4-NOT transc  (531 aa)
 initn: 3567 init1: 3567 opt: 3568  Z-score: 2583.7  bits: 487.8 E(85289): 3.6e-137
Smith-Waterman score: 3568; 99.4% identity (99.6% similar) in 529 aa overlap (12-540:3-531)

               10        20        30        40        50        60
pF1KB7 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
                  :.  :::::::::::::::::::::::::::::::::::::::::::::
XP_016          MLKEVAQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
                        10        20        30        40        50 

               70        80        90       100       110       120
pF1KB7 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
              60        70        80        90       100       110 

              130       140       150       160       170       180
pF1KB7 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
             120       130       140       150       160       170 

              190       200       210       220       230       240
pF1KB7 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
             180       190       200       210       220       230 

              250       260       270       280       290       300
pF1KB7 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
             240       250       260       270       280       290 

              310       320       330       340       350       360
pF1KB7 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
             300       310       320       330       340       350 

              370       380       390       400       410       420
pF1KB7 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
             360       370       380       390       400       410 

              430       440       450       460       470       480
pF1KB7 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
             420       430       440       450       460       470 

              490       500       510       520       530       540
pF1KB7 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
             480       490       500       510       520       530 

>>XP_016874839 (OMIM: 604909) PREDICTED: CCR4-NOT transc  (520 aa)
 initn: 3538 init1: 3538 opt: 3538  Z-score: 2562.3  bits: 483.8 E(85289): 5.6e-136
Smith-Waterman score: 3538; 100.0% identity (100.0% similar) in 520 aa overlap (21-540:1-520)

               10        20        30        40        50        60
pF1KB7 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
                           ::::::::::::::::::::::::::::::::::::::::
XP_016                     MFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
                                   10        20        30        40

               70        80        90       100       110       120
pF1KB7 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
               50        60        70        80        90       100

              130       140       150       160       170       180
pF1KB7 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
              110       120       130       140       150       160

              190       200       210       220       230       240
pF1KB7 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
              170       180       190       200       210       220

              250       260       270       280       290       300
pF1KB7 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
              230       240       250       260       270       280

              310       320       330       340       350       360
pF1KB7 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
              290       300       310       320       330       340

              370       380       390       400       410       420
pF1KB7 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
              350       360       370       380       390       400

              430       440       450       460       470       480
pF1KB7 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
              410       420       430       440       450       460

              490       500       510       520       530       540
pF1KB7 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
              470       480       490       500       510       520

>>XP_016874841 (OMIM: 604909) PREDICTED: CCR4-NOT transc  (520 aa)
 initn: 3538 init1: 3538 opt: 3538  Z-score: 2562.3  bits: 483.8 E(85289): 5.6e-136
Smith-Waterman score: 3538; 100.0% identity (100.0% similar) in 520 aa overlap (21-540:1-520)

               10        20        30        40        50        60
pF1KB7 MVRTDGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
                           ::::::::::::::::::::::::::::::::::::::::
XP_016                     MFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLA
                                   10        20        30        40

               70        80        90       100       110       120
pF1KB7 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPSTSGQLSQFGASLYGQQSALGLPMRGMSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS
               50        60        70        80        90       100

              130       140       150       160       170       180
pF1KB7 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHTPPSPSRGILPMNPRNMMNHSQVGQGIGIPSRTNSMSSSGLGSPNRSSPSIICMPKQQ
              110       120       130       140       150       160

              190       200       210       220       230       240
pF1KB7 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSRQPFTVNSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRNRRE
              170       180       190       200       210       220

              250       260       270       280       290       300
pF1KB7 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKS
              230       240       250       260       270       280

              310       320       330       340       350       360
pF1KB7 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NLNTSGKTTSSTDGPKFPGDKSSTTQNNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGL
              290       300       310       320       330       340

              370       380       390       400       410       420
pF1KB7 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSE
              350       360       370       380       390       400

              430       440       450       460       470       480
pF1KB7 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWIT
              410       420       430       440       450       460

              490       500       510       520       530       540
pF1KB7 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHLPSTFNYNPAQQAF
              470       480       490       500       510       520




540 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:32:59 2016 done: Fri Nov  4 22:33:00 2016
 Total Scan time: 10.740 Total Display time:  0.110

Function used was FASTA [36.3.4 Apr, 2011]
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