Result of FASTA (ccds) for pF1KA1633
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1633, 1814 aa
  1>>>pF1KA1633 1814 - 1814 aa - 1814 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.3825+/-0.00153; mu= -3.6419+/- 0.090
 mean_var=374.1838+/-78.909, 0's: 0 Z-trim(107.7): 126  B-trim: 99 in 1/52
 Lambda= 0.066303
 statistics sampled from 9632 (9731) to 9632 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.299), width:  16
 Scan time:  6.770

The best scores are:                                      opt bits E(32554)
CCDS43871.1 CDK5RAP2 gene_id:55755|Hs108|chr9      (1814) 11608 1126.8       0
CCDS6823.1 CDK5RAP2 gene_id:55755|Hs108|chr9       (1893) 10032 976.0       0
CCDS75888.1 CDK5RAP2 gene_id:55755|Hs108|chr9      (1663) 4140 412.4 7.1e-114


>>CCDS43871.1 CDK5RAP2 gene_id:55755|Hs108|chr9           (1814 aa)
 initn: 11608 init1: 11608 opt: 11608  Z-score: 6018.0  bits: 1126.8 E(32554):    0
Smith-Waterman score: 11608; 99.9% identity (100.0% similar) in 1814 aa overlap (1-1814:1-1814)

               10        20        30        40        50        60
pF1KA1 MMDLVLEEDVTVPGTLSGCSGLVPSVPDDLDGINPNAGLGNGLLPNVSEETVSPTRARNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MMDLVLEEDVTVPGTLSGCSGLVPSVPDDLDGINPNAGLGNGLLPNVSEETVSPTRARNM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 KDFENQITELKKENFNLKLRIYFLEERMQQEFHGPTEHIYKTNIELKVEVESLKRELQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KDFENQITELKKENFNLKLRIYFLEERMQQEFHGPTEHIYKTNIELKVEVESLKRELQER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 EQLLIKASKAVESLAEAGGSEIQRVKEDARKKVQQVEDLLTKRILLLEKDVTAAQAELEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EQLLIKASKAVESLAEAGGSEIQRVKEDARKKVQQVEDLLTKRILLLEKDVTAAQAELEK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 AFAGTETEKALRLRLESKLSEMKKMHEGDLAMALVLDEKDRLIEELKLSLKSKEALIQCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AFAGTETEKALRLRLESKLSEMKKMHEGDLAMALVLDEKDRLIEELKLSLKSKEALIQCL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 KEEKSQMACPDENVSSGELRGLCAAPREEKERETEAAQMEHQKERNSFQERIQALEEDLR
       ::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
CCDS43 KEEKSQMACPDENVSSGELRGLCAAPREEKERETEAAQMEHQKERNSFEERIQALEEDLR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 EKEREIATEKKNSLKRDKAIQGLTMALKSKEKKVEELNSEIEKLSAAFAKAREALQKAQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EKEREIATEKKNSLKRDKAIQGLTMALKSKEKKVEELNSEIEKLSAAFAKAREALQKAQT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 QEFQGSEDYETALSGKEALSAALRSQNLTKSTENHRLRRSIKKITQELSDLQQERERLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QEFQGSEDYETALSGKEALSAALRSQNLTKSTENHRLRRSIKKITQELSDLQQERERLEK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 DLEEAHREKSKGDCTIRDLRNEVEKLRNEVNEREKAMENRYKSLLSESNKKLHNQEQVIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DLEEAHREKSKGDCTIRDLRNEVEKLRNEVNEREKAMENRYKSLLSESNKKLHNQEQVIK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 HLTESTNQKDVLLQKFNEKDLEVIQQNCYLMAAEDLELRSEGLITEKCSSQQPPGSKTIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 HLTESTNQKDVLLQKFNEKDLEVIQQNCYLMAAEDLELRSEGLITEKCSSQQPPGSKTIF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 SKEKKQSSDYEELIQVLKKEQDIYTHLVKSLQESDSINNLQAELNKIFALRKQLEQDVLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SKEKKQSSDYEELIQVLKKEQDIYTHLVKSLQESDSINNLQAELNKIFALRKQLEQDVLS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 YQNLRKTLEEQISEIRRREEESFSLYSDQTSYLSICLEENNRFQVEHFSQEELKKKVSDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YQNLRKTLEEQISEIRRREEESFSLYSDQTSYLSICLEENNRFQVEHFSQEELKKKVSDL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 IQLVKELYTDNQHLKKTIFDLSCMGFQGNGFPDRLASTEQTELLASKEDEDTIKIGEDDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IQLVKELYTDNQHLKKTIFDLSCMGFQGNGFPDRLASTEQTELLASKEDEDTIKIGEDDE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA1 INFLSDQHLQQSNEIMKDLSKGGCKNGYLRHTESKISDCDGAHAPGCLEEGAFINLLAPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 INFLSDQHLQQSNEIMKDLSKGGCKNGYLRHTESKISDCDGAHAPGCLEEGAFINLLAPL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA1 FNEKATLLLESRPDLLKVVRELLLGQLFLTEQEVSGEHLDGKTEKTPKQKGELVHFVQTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FNEKATLLLESRPDLLKVVRELLLGQLFLTEQEVSGEHLDGKTEKTPKQKGELVHFVQTN
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA1 SFSKPHDELKLSCEAQLVKAGEVPKVGLKDASVQTVATEGDLLRFKHEATREAWEEKPIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SFSKPHDELKLSCEAQLVKAGEVPKVGLKDASVQTVATEGDLLRFKHEATREAWEEKPIN
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA1 TALSAEHRPENLHGVPGWQAALLSLPGITNREAKKSRLPILIKPSRSLGNMYRLPATQEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TALSAEHRPENLHGVPGWQAALLSLPGITNREAKKSRLPILIKPSRSLGNMYRLPATQEV
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA1 VTQLQSQILELQGELKEFKTCNKQLHQKLILAEAVMEGRPTPDKTLLNAQPPVGAAYQDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VTQLQSQILELQGELKEFKTCNKQLHQKLILAEAVMEGRPTPDKTLLNAQPPVGAAYQDS
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA1 PGEQKGIKTTSSVWRDKEMDSDQQRSYEIDSEICPPDDLASLPSCKENPEDVLSPTSVAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PGEQKGIKTTSSVWRDKEMDSDQQRSYEIDSEICPPDDLASLPSCKENPEDVLSPTSVAT
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA1 YLSSKSQPSAKVSVMGTDQSESINTSNETEYLKQKIHDLETELEGYQNFIFQLQKHSQCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YLSSKSQPSAKVSVMGTDQSESINTSNETEYLKQKIHDLETELEGYQNFIFQLQKHSQCS
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA1 EAIITVLCGTEGAQDGLSKPKNGSDGEEMTFSSLHQVRYVKHVKILGPLAPEMIDSRVLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EAIITVLCGTEGAQDGLSKPKNGSDGEEMTFSSLHQVRYVKHVKILGPLAPEMIDSRVLE
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KA1 NLKQQLEEQEYKLQKEQNLNMQLFSEIHNLQNKFRDLSPPRYDSLVQSQARELSLQRQQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NLKQQLEEQEYKLQKEQNLNMQLFSEIHNLQNKFRDLSPPRYDSLVQSQARELSLQRQQI
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KA1 KDGHGICVISRQHMNTMIKAFEELLQASDVDYCVAEGFQEQLNQCAELLEKLEKLFLNGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KDGHGICVISRQHMNTMIKAFEELLQASDVDYCVAEGFQEQLNQCAELLEKLEKLFLNGK
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KA1 SVGVEMNTQNELMERIEEDNLTYQHLLPESPEPSASHALSDYETSEKSFFSRDQKQDNET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SVGVEMNTQNELMERIEEDNLTYQHLLPESPEPSASHALSDYETSEKSFFSRDQKQDNET
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420      1430      1440
pF1KA1 EKTSVMVNSFSQDLLMEHIQEIRTLRKRLEESIKTNEKLRKQLERQGSEFVQGSTSIFAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EKTSVMVNSFSQDLLMEHIQEIRTLRKRLEESIKTNEKLRKQLERQGSEFVQGSTSIFAS
             1390      1400      1410      1420      1430      1440

             1450      1460      1470      1480      1490      1500
pF1KA1 GSELHSSLTSEIHFLRKQNQALNAMLIKGSRDKQKENDKLRESLSRKTVSLEHLQREYAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GSELHSSLTSEIHFLRKQNQALNAMLIKGSRDKQKENDKLRESLSRKTVSLEHLQREYAS
             1450      1460      1470      1480      1490      1500

             1510      1520      1530      1540      1550      1560
pF1KA1 VKEENERLQKEGSEKERHNQQLIQEVRCSGQELSRVQEELKLRQQLLSQNDKLLQSLRVE
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS43 VKEENERLQKEGSEKERHNQQLIQEVRCSGQELSRVQEEVKLRQQLLSQNDKLLQSLRVE
             1510      1520      1530      1540      1550      1560

             1570      1580      1590      1600      1610      1620
pF1KA1 LKAYEKLDEEHRRLRDGDKYPMESDNSFDLFDSSQAVTPKSVSETPPLSGNDTDSLSCDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LKAYEKLDEEHRRLRDGDKYPMESDNSFDLFDSSQAVTPKSVSETPPLSGNDTDSLSCDS
             1570      1580      1590      1600      1610      1620

             1630      1640      1650      1660      1670      1680
pF1KA1 GSSATSTPCVSRLVTGHHLWASKNGRHVLGLIEDYEALLKQISQGQRLLAEMDIQTQEAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GSSATSTPCVSRLVTGHHLWASKNGRHVLGLIEDYEALLKQISQGQRLLAEMDIQTQEAP
             1630      1640      1650      1660      1670      1680

             1690      1700      1710      1720      1730      1740
pF1KA1 SSTSQELGTKGPHPAPLSKFVSSVSTAKLTLEEAYRRLKLLWRVSLPEDGQCPLHCEQIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SSTSQELGTKGPHPAPLSKFVSSVSTAKLTLEEAYRRLKLLWRVSLPEDGQCPLHCEQIG
             1690      1700      1710      1720      1730      1740

             1750      1760      1770      1780      1790      1800
pF1KA1 EMKAEVTKLHKKLFEQEKKLQNTMKLLQLSKRQEKVIFDQLVVTHKILRKARGNLELRPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EMKAEVTKLHKKLFEQEKKLQNTMKLLQLSKRQEKVIFDQLVVTHKILRKARGNLELRPG
             1750      1760      1770      1780      1790      1800

             1810    
pF1KA1 GAHPGTCSPSRPGS
       ::::::::::::::
CCDS43 GAHPGTCSPSRPGS
             1810    

>>CCDS6823.1 CDK5RAP2 gene_id:55755|Hs108|chr9            (1893 aa)
 initn: 10031 init1: 10031 opt: 10032  Z-score: 5203.0  bits: 976.0 E(32554):    0
Smith-Waterman score: 11122; 95.6% identity (95.7% similar) in 1846 aa overlap (1-1767:1-1846)

               10        20        30        40        50        60
pF1KA1 MMDLVLEEDVTVPGTLSGCSGLVPSVPDDLDGINPNAGLGNGLLPNVSEETVSPTRARNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MMDLVLEEDVTVPGTLSGCSGLVPSVPDDLDGINPNAGLGNGLLPNVSEETVSPTRARNM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 KDFENQITELKKENFNLKLRIYFLEERMQQEFHGPTEHIYKTNIELKVEVESLKRELQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 KDFENQITELKKENFNLKLRIYFLEERMQQEFHGPTEHIYKTNIELKVEVESLKRELQER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 EQLLIKASKAVESLAEAGGSEIQRVKEDARKKVQQVEDLLTKRILLLEKDVTAAQAELEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 EQLLIKASKAVESLAEAGGSEIQRVKEDARKKVQQVEDLLTKRILLLEKDVTAAQAELEK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 AFAGTETEKALRLRLESKLSEMKKMHEGDLAMALVLDEKDRLIEELKLSLKSKEALIQCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 AFAGTETEKALRLRLESKLSEMKKMHEGDLAMALVLDEKDRLIEELKLSLKSKEALIQCL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 KEEKSQMACPDENVSSGELRGLCAAPREEKERETEAAQMEHQKERNSFQERIQALEEDLR
       ::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
CCDS68 KEEKSQMACPDENVSSGELRGLCAAPREEKERETEAAQMEHQKERNSFEERIQALEEDLR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 EKEREIATEKKNSLKRDKAIQGLTMALKSKEKKVEELNSEIEKLSAAFAKAREALQKAQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 EKEREIATEKKNSLKRDKAIQGLTMALKSKEKKVEELNSEIEKLSAAFAKAREALQKAQT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 QEFQGSEDYETALSGKEALSAALRSQNLTKSTENHRLRRSIKKITQELSDLQQERERLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 QEFQGSEDYETALSGKEALSAALRSQNLTKSTENHRLRRSIKKITQELSDLQQERERLEK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 DLEEAHREKSKGDCTIRDLRNEVEKLRNEVNEREKAMENRYKSLLSESNKKLHNQEQVIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 DLEEAHREKSKGDCTIRDLRNEVEKLRNEVNEREKAMENRYKSLLSESNKKLHNQEQVIK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 HLTESTNQKDVLLQKFNEKDLEVIQQNCYLMAAEDLELRSEGLITEKCSSQQPPGSKTIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 HLTESTNQKDVLLQKFNEKDLEVIQQNCYLMAAEDLELRSEGLITEKCSSQQPPGSKTIF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 SKEKKQSSDYEELIQVLKKEQDIYTHLVKSLQESDSINNLQAELNKIFALRKQLEQDVLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 SKEKKQSSDYEELIQVLKKEQDIYTHLVKSLQESDSINNLQAELNKIFALRKQLEQDVLS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 YQNLRKTLEEQISEIRRREEESFSLYSDQTSYLSICLEENNRFQVEHFSQEELKKKVSDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 YQNLRKTLEEQISEIRRREEESFSLYSDQTSYLSICLEENNRFQVEHFSQEELKKKVSDL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 IQLVKELYTDNQHLKKTIFDLSCMGFQGNGFPDRLASTEQTELLASKEDEDTIKIGEDDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 IQLVKELYTDNQHLKKTIFDLSCMGFQGNGFPDRLASTEQTELLASKEDEDTIKIGEDDE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA1 INFLSDQHLQQSNEIMKDLSKGGCKNGYLRHTESKISDCDGAHAPGCLEEGAFINLLAPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 INFLSDQHLQQSNEIMKDLSKGGCKNGYLRHTESKISDCDGAHAPGCLEEGAFINLLAPL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA1 FNEKATLLLESRPDLLKVVRELLLGQLFLTEQEVSGEHLDGKTEKTPKQKGELVHFVQTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 FNEKATLLLESRPDLLKVVRELLLGQLFLTEQEVSGEHLDGKTEKTPKQKGELVHFVQTN
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA1 SFSKPHDELKLSCEAQLVKAGEVPKVGLKDASVQTVATEGDLLRFKHEATREAWEEKPIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 SFSKPHDELKLSCEAQLVKAGEVPKVGLKDASVQTVATEGDLLRFKHEATREAWEEKPIN
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA1 TALSAEHRPENLHGVPGWQAALLSLPGITNREAKKSRLPILIKPSRSLGNMYRLPATQEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 TALSAEHRPENLHGVPGWQAALLSLPGITNREAKKSRLPILIKPSRSLGNMYRLPATQEV
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA1 VTQLQSQILELQGELKEFKTCNKQLHQKLILAEAVMEGRPTPDKTLLNAQPPVGAAYQDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 VTQLQSQILELQGELKEFKTCNKQLHQKLILAEAVMEGRPTPDKTLLNAQPPVGAAYQDS
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA1 PGEQKGIKTTSSVWRDKEMDSDQQRSYEIDSEICPPDDLASLPSCKENPEDVLSPTSVAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 PGEQKGIKTTSSVWRDKEMDSDQQRSYEIDSEICPPDDLASLPSCKENPEDVLSPTSVAT
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA1 YLSSKSQPSAKVSVMGTDQSESINTSNETEYLKQKIHDLETELEGYQNFIFQLQKHSQCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 YLSSKSQPSAKVSVMGTDQSESINTSNETEYLKQKIHDLETELEGYQNFIFQLQKHSQCS
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KA1 EAIITVLCGTEGAQDGLSKPKNGSDGEEMTFSSLHQVRYVKHVKILGPLAPEMIDSRVLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 EAIITVLCGTEGAQDGLSKPKNGSDGEEMTFSSLHQVRYVKHVKILGPLAPEMIDSRVLE
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KA1 NLKQQLEEQEYKLQKEQNLNMQLFSEIHNLQNKFRDLSPPRYDSLVQSQARELSLQRQQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 NLKQQLEEQEYKLQKEQNLNMQLFSEIHNLQNKFRDLSPPRYDSLVQSQARELSLQRQQI
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KA1 KDGHGICVISRQHMNTMIKAFEELLQASDVDYCVAEGFQEQLNQCAELLEKLEKLFLNGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 KDGHGICVISRQHMNTMIKAFEELLQASDVDYCVAEGFQEQLNQCAELLEKLEKLFLNGK
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KA1 SVGVEMNTQNELMERIEEDNLTYQHLLPESPEPSASHALSDYETSEKSFFSRDQKQDNET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 SVGVEMNTQNELMERIEEDNLTYQHLLPESPEPSASHALSDYETSEKSFFSRDQKQDNET
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420      1430      1440
pF1KA1 EKTSVMVNSFSQDLLMEHIQEIRTLRKRLEESIKTNEKLRKQLERQGSEFVQGSTSIFAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 EKTSVMVNSFSQDLLMEHIQEIRTLRKRLEESIKTNEKLRKQLERQGSEFVQGSTSIFAS
             1390      1400      1410      1420      1430      1440

             1450      1460      1470      1480      1490      1500
pF1KA1 GSELHSSLTSEIHFLRKQNQALNAMLIKGSRDKQKENDKLRESLSRKTVSLEHLQREYAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 GSELHSSLTSEIHFLRKQNQALNAMLIKGSRDKQKENDKLRESLSRKTVSLEHLQREYAS
             1450      1460      1470      1480      1490      1500

             1510      1520      1530      1540      1550      1560
pF1KA1 VKEENERLQKEGSEKERHNQQLIQEVRCSGQELSRVQEELKLRQQLLSQNDKLLQSLRVE
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS68 VKEENERLQKEGSEKERHNQQLIQEVRCSGQELSRVQEEVKLRQQLLSQNDKLLQSLRVE
             1510      1520      1530      1540      1550      1560

             1570                                                  
pF1KA1 LKAYEKLDEEHRRLR---------------------------------------------
       :::::::::::::::                                             
CCDS68 LKAYEKLDEEHRRLREASGEGWKGQDPFRDLHSLLMEIQALRLQLERSIETSSTLQSRLK
             1570      1580      1590      1600      1610      1620

                                          1580      1590      1600 
pF1KA1 ----------------------------------DGDKYPMESDNSFDLFDSSQAVTPKS
                                         ::::::::::::::::::::::::::
CCDS68 EQLARGAEKAQEGALTLAVQAVSIPEVPLQPDKHDGDKYPMESDNSFDLFDSSQAVTPKS
             1630      1640      1650      1660      1670      1680

            1610      1620      1630      1640      1650      1660 
pF1KA1 VSETPPLSGNDTDSLSCDSGSSATSTPCVSRLVTGHHLWASKNGRHVLGLIEDYEALLKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 VSETPPLSGNDTDSLSCDSGSSATSTPCVSRLVTGHHLWASKNGRHVLGLIEDYEALLKQ
             1690      1700      1710      1720      1730      1740

            1670      1680      1690      1700      1710      1720 
pF1KA1 ISQGQRLLAEMDIQTQEAPSSTSQELGTKGPHPAPLSKFVSSVSTAKLTLEEAYRRLKLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 ISQGQRLLAEMDIQTQEAPSSTSQELGTKGPHPAPLSKFVSSVSTAKLTLEEAYRRLKLL
             1750      1760      1770      1780      1790      1800

            1730      1740      1750      1760      1770      1780 
pF1KA1 WRVSLPEDGQCPLHCEQIGEMKAEVTKLHKKLFEQEKKLQNTMKLLQLSKRQEKVIFDQL
       ::::::::::::::::::::::::::::::::::::::::::::::              
CCDS68 WRVSLPEDGQCPLHCEQIGEMKAEVTKLHKKLFEQEKKLQNTMKLLQLSKRQEKVIFDQL
             1810      1820      1830      1840      1850      1860

            1790      1800      1810    
pF1KA1 VVTHKILRKARGNLELRPGGAHPGTCSPSRPGS
                                        
CCDS68 VVTHKILRKARGNLELRPGGAHPGTCSPSRPGS
             1870      1880      1890   

>>CCDS75888.1 CDK5RAP2 gene_id:55755|Hs108|chr9           (1663 aa)
 initn: 7977 init1: 4139 opt: 4140  Z-score: 2157.9  bits: 412.4 E(32554): 7.1e-114
Smith-Waterman score: 9131; 83.2% identity (83.3% similar) in 1846 aa overlap (1-1767:1-1616)

               10        20        30        40        50        60
pF1KA1 MMDLVLEEDVTVPGTLSGCSGLVPSVPDDLDGINPNAGLGNGLLPNVSEETVSPTRARNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MMDLVLEEDVTVPGTLSGCSGLVPSVPDDLDGINPNAGLGNGLLPNVSEETVSPTRARNM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 KDFENQITELKKENFNLKLRIYFLEERMQQEFHGPTEHIYKTNIELKVEVESLKRELQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KDFENQITELKKENFNLKLRIYFLEERMQQEFHGPTEHIYKTNIELKVEVESLKRELQER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 EQLLIKASKAVESLAEAGGSEIQRVKEDARKKVQQVEDLLTKRILLLEKDVTAAQAELEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EQLLIKASKAVESLAEAGGSEIQRVKEDARKKVQQVEDLLTKRILLLEKDVTAAQAELEK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 AFAGTETEKALRLRLESKLSEMKKMHEGDLAMALVLDEKDRLIEELKLSLKSKEALIQCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AFAGTETEKALRLRLESKLSEMKKMHEGDLAMALVLDEKDRLIEELKLSLKSKEALIQCL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 KEEKSQMACPDENVSSGELRGLCAAPREEKERETEAAQMEHQKERNSFQERIQALEEDLR
       ::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
CCDS75 KEEKSQMACPDENVSSGELRGLCAAPREEKERETEAAQMEHQKERNSFEERIQALEEDLR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 EKEREIATEKKNSLKRDKAIQGLTMALKSKEKKVEELNSEIEKLSAAFAKAREALQKAQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EKEREIATEKKNSLKRDKAIQGLTMALKSKEKKVEELNSEIEKLSAAFAKAREALQKAQT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 QEFQGSEDYETALSGKEALSAALRSQNLTKSTENHRLRRSIKKITQELSDLQQERERLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QEFQGSEDYETALSGKEALSAALRSQNLTKSTENHRLRRSIKKITQELSDLQQERERLEK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 DLEEAHREKSKGDCTIRDLRNEVEKLRNEVNEREKAMENRYKSLLSESNKKLHNQEQVIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DLEEAHREKSKGDCTIRDLRNEVEKLRNEVNEREKAMENRYKSLLSESNKKLHNQEQVIK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 HLTESTNQKDVLLQKFNEKDLEVIQQNCYLMAAEDLELRSEGLITEKCSSQQPPGSKTIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 HLTESTNQKDVLLQKFNEKDLEVIQQNCYLMAAEDLELRSEGLITEKCSSQQPPGSKTIF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 SKEKKQSSDYEELIQVLKKEQDIYTHLVKSLQESDSINNLQAELNKIFALRKQLEQDVLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SKEKKQSSDYEELIQVLKKEQDIYTHLVKSLQESDSINNLQAELNKIFALRKQLEQDVLS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 YQNLRKTLEEQISEIRRREEESFSLYSDQTSYLSICLEENNRFQVEHFSQEELKKKVSDL
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
CCDS75 YQNLRKTLEEQISEIRRREE-SFSLYSDQTSYLSICLEENNRFQVEHFSQEELKKKVSDL
              610       620        630       640       650         

              670       680       690       700       710       720
pF1KA1 IQLVKELYTDNQHLKKTIFDLSCMGFQGNGFPDRLASTEQTELLASKEDEDTIKIGEDDE
       ::::::::::::::::::::::::::::::::::::::::::                  
CCDS75 IQLVKELYTDNQHLKKTIFDLSCMGFQGNGFPDRLASTEQTE------------------
     660       670       680       690       700                   

              730       740       750       760       770       780
pF1KA1 INFLSDQHLQQSNEIMKDLSKGGCKNGYLRHTESKISDCDGAHAPGCLEEGAFINLLAPL
                                                                   
CCDS75 ------------------------------------------------------------
                                                                   

              790       800       810       820       830       840
pF1KA1 FNEKATLLLESRPDLLKVVRELLLGQLFLTEQEVSGEHLDGKTEKTPKQKGELVHFVQTN
                                                                   
CCDS75 ------------------------------------------------------------
                                                                   

              850       860       870       880       890       900
pF1KA1 SFSKPHDELKLSCEAQLVKAGEVPKVGLKDASVQTVATEGDLLRFKHEATREAWEEKPIN
                                                                   
CCDS75 ------------------------------------------------------------
                                                                   

              910       920       930       940       950       960
pF1KA1 TALSAEHRPENLHGVPGWQAALLSLPGITNREAKKSRLPILIKPSRSLGNMYRLPATQEV
                                      :::::::::::::::::::::::::::::
CCDS75 -------------------------------EAKKSRLPILIKPSRSLGNMYRLPATQEV
                                            710       720       730

              970       980       990      1000      1010      1020
pF1KA1 VTQLQSQILELQGELKEFKTCNKQLHQKLILAEAVMEGRPTPDKTLLNAQPPVGAAYQDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VTQLQSQILELQGELKEFKTCNKQLHQKLILAEAVMEGRPTPDKTLLNAQPPVGAAYQDS
              740       750       760       770       780       790

             1030      1040      1050      1060      1070      1080
pF1KA1 PGEQKGIKTTSSVWRDKEMDSDQQRSYEIDSEICPPDDLASLPSCKENPEDVLSPTSVAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PGEQKGIKTTSSVWRDKEMDSDQQRSYEIDSEICPPDDLASLPSCKENPEDVLSPTSVAT
              800       810       820       830       840       850

             1090      1100      1110      1120      1130      1140
pF1KA1 YLSSKSQPSAKVSVMGTDQSESINTSNETEYLKQKIHDLETELEGYQNFIFQLQKHSQCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 YLSSKSQPSAKVSVMGTDQSESINTSNETEYLKQKIHDLETELEGYQNFIFQLQKHSQCS
              860       870       880       890       900       910

             1150      1160      1170      1180      1190      1200
pF1KA1 EAIITVLCGTEGAQDGLSKPKNGSDGEEMTFSSLHQVRYVKHVKILGPLAPEMIDSRVLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EAIITVLCGTEGAQDGLSKPKNGSDGEEMTFSSLHQVRYVKHVKILGPLAPEMIDSRVLE
              920       930       940       950       960       970

             1210      1220      1230      1240      1250      1260
pF1KA1 NLKQQLEEQEYKLQKEQNLNMQLFSEIHNLQNKFRDLSPPRYDSLVQSQARELSLQRQQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NLKQQLEEQEYKLQKEQNLNMQLFSEIHNLQNKFRDLSPPRYDSLVQSQARELSLQRQQI
              980       990      1000      1010      1020      1030

             1270      1280      1290      1300      1310      1320
pF1KA1 KDGHGICVISRQHMNTMIKAFEELLQASDVDYCVAEGFQEQLNQCAELLEKLEKLFLNGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KDGHGICVISRQHMNTMIKAFEELLQASDVDYCVAEGFQEQLNQCAELLEKLEKLFLNGK
             1040      1050      1060      1070      1080      1090

             1330      1340      1350      1360      1370      1380
pF1KA1 SVGVEMNTQNELMERIEEDNLTYQHLLPESPEPSASHALSDYETSEKSFFSRDQKQDNET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SVGVEMNTQNELMERIEEDNLTYQHLLPESPEPSASHALSDYETSEKSFFSRDQKQDNET
             1100      1110      1120      1130      1140      1150

             1390      1400      1410      1420      1430      1440
pF1KA1 EKTSVMVNSFSQDLLMEHIQEIRTLRKRLEESIKTNEKLRKQLERQGSEFVQGSTSIFAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EKTSVMVNSFSQDLLMEHIQEIRTLRKRLEESIKTNEKLRKQLERQGSEFVQGSTSIFAS
             1160      1170      1180      1190      1200      1210

             1450      1460      1470      1480      1490      1500
pF1KA1 GSELHSSLTSEIHFLRKQNQALNAMLIKGSRDKQKENDKLRESLSRKTVSLEHLQREYAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GSELHSSLTSEIHFLRKQNQALNAMLIKGSRDKQKENDKLRESLSRKTVSLEHLQREYAS
             1220      1230      1240      1250      1260      1270

             1510      1520      1530      1540      1550      1560
pF1KA1 VKEENERLQKEGSEKERHNQQLIQEVRCSGQELSRVQEELKLRQQLLSQNDKLLQSLRVE
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS75 VKEENERLQKEGSEKERHNQQLIQEVRCSGQELSRVQEEVKLRQQLLSQNDKLLQSLRVE
             1280      1290      1300      1310      1320      1330

             1570                                                  
pF1KA1 LKAYEKLDEEHRRLR---------------------------------------------
       :::::::::::::::                                             
CCDS75 LKAYEKLDEEHRRLREASGEGWKGQDPFRDLHSLLMEIQALRLQLERSIETSSTLQSRLK
             1340      1350      1360      1370      1380      1390

                                          1580      1590      1600 
pF1KA1 ----------------------------------DGDKYPMESDNSFDLFDSSQAVTPKS
                                         ::::::::::::::::::::::::::
CCDS75 EQLARGAEKAQEGALTLAVQAVSIPEVPLQPDKHDGDKYPMESDNSFDLFDSSQAVTPKS
             1400      1410      1420      1430      1440      1450

            1610      1620      1630      1640      1650      1660 
pF1KA1 VSETPPLSGNDTDSLSCDSGSSATSTPCVSRLVTGHHLWASKNGRHVLGLIEDYEALLKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VSETPPLSGNDTDSLSCDSGSSATSTPCVSRLVTGHHLWASKNGRHVLGLIEDYEALLKQ
             1460      1470      1480      1490      1500      1510

            1670      1680      1690      1700      1710      1720 
pF1KA1 ISQGQRLLAEMDIQTQEAPSSTSQELGTKGPHPAPLSKFVSSVSTAKLTLEEAYRRLKLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ISQGQRLLAEMDIQTQEAPSSTSQELGTKGPHPAPLSKFVSSVSTAKLTLEEAYRRLKLL
             1520      1530      1540      1550      1560      1570

            1730      1740      1750      1760      1770      1780 
pF1KA1 WRVSLPEDGQCPLHCEQIGEMKAEVTKLHKKLFEQEKKLQNTMKLLQLSKRQEKVIFDQL
       ::::::::::::::::::::::::::::::::::::::::::::::              
CCDS75 WRVSLPEDGQCPLHCEQIGEMKAEVTKLHKKLFEQEKKLQNTMKLLQLSKRQEKVIFDQL
             1580      1590      1600      1610      1620      1630

            1790      1800      1810    
pF1KA1 VVTHKILRKARGNLELRPGGAHPGTCSPSRPGS
                                        
CCDS75 VVTHKILRKARGNLELRPGGAHPGTCSPSRPGS
             1640      1650      1660   




1814 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:22:47 2016 done: Sat Nov  5 02:22:48 2016
 Total Scan time:  6.770 Total Display time:  0.330

Function used was FASTA [36.3.4 Apr, 2011]
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