Result of FASTA (ccds) for
pF1KB8567
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8567, 398 aa
1>>>pF1KB8567 398 - 398 aa - 398 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0022+/-0.00108; mu= 14.5369+/- 0.065
mean_var=86.4414+/-16.899, 0's: 0 Z-trim(104.4): 34 B-trim: 5 in 2/49
Lambda= 0.137947
statistics sampled from 7849 (7875) to 7849 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.611), E-opt: 0.2 (0.242), width: 16
Scan time: 2.840
The best scores are: opt bits E(32554)
CCDS10170.1 CCNB2 gene_id:9133|Hs108|chr15 ( 398) 2564 520.4 1.1e-147
CCDS3997.1 CCNB1 gene_id:891|Hs108|chr5 ( 433) 1311 271.0 1.4e-72
CCDS45031.1 CCNA1 gene_id:8900|Hs108|chr13 ( 421) 617 132.9 5.3e-31
CCDS45030.1 CCNA1 gene_id:8900|Hs108|chr13 ( 464) 617 132.9 5.8e-31
CCDS9357.1 CCNA1 gene_id:8900|Hs108|chr13 ( 465) 617 132.9 5.8e-31
CCDS14331.1 CCNB3 gene_id:85417|Hs108|chrX (1395) 542 118.3 4.5e-26
CCDS3723.1 CCNA2 gene_id:890|Hs108|chr4 ( 432) 534 116.4 5.1e-26
CCDS14332.1 CCNB3 gene_id:85417|Hs108|chrX ( 291) 407 91.0 1.5e-18
CCDS34157.1 CCNO gene_id:10309|Hs108|chr5 ( 350) 320 73.8 2.8e-13
CCDS12551.2 CNTD2 gene_id:79935|Hs108|chr19 ( 307) 313 72.3 6.7e-13
CCDS6264.1 CCNE2 gene_id:9134|Hs108|chr8 ( 404) 307 71.2 1.9e-12
CCDS12419.1 CCNE1 gene_id:898|Hs108|chr19 ( 410) 304 70.6 2.9e-12
>>CCDS10170.1 CCNB2 gene_id:9133|Hs108|chr15 (398 aa)
initn: 2564 init1: 2564 opt: 2564 Z-score: 2764.5 bits: 520.4 E(32554): 1.1e-147
Smith-Waterman score: 2564; 100.0% identity (100.0% similar) in 398 aa overlap (1-398:1-398)
10 20 30 40 50 60
pF1KB8 MALLRRPTVSSDLENIDTGVNSKVKSHVTIRRTVLEEIGNRVTTRAAQVAKKAQNTKVPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MALLRRPTVSSDLENIDTGVNSKVKSHVTIRRTVLEEIGNRVTTRAAQVAKKAQNTKVPV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 QPTKTTNVNKQLKPTASVKPVQMEKLAPKGPSPTPEDVSMKEENLCQAFSDALLCKIEDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QPTKTTNVNKQLKPTASVKPVQMEKLAPKGPSPTPEDVSMKEENLCQAFSDALLCKIEDI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DNEDWENPQLCSDYVKDIYQYLRQLEVLQSINPHFLDGRDINGRMRAILVDWLVQVHSKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DNEDWENPQLCSDYVKDIYQYLRQLEVLQSINPHFLDGRDINGRMRAILVDWLVQVHSKF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 RLLQETLYMCVGIMDRFLQVQPVSRKKLQLVGITALLLASKYEEMFSPNIEDFVYITDNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RLLQETLYMCVGIMDRFLQVQPVSRKKLQLVGITALLLASKYEEMFSPNIEDFVYITDNA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 YTSSQIREMETLILKELKFELGRPLPLHFLRRASKAGEVDVEQHTLAKYLMELTLIDYDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YTSSQIREMETLILKELKFELGRPLPLHFLRRASKAGEVDVEQHTLAKYLMELTLIDYDM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 VHYHPSKVAAAASCLSQKVLGQGKWNLKQQYYTGYTENEVLEVMQHMAKNVVKVNENLTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VHYHPSKVAAAASCLSQKVLGQGKWNLKQQYYTGYTENEVLEVMQHMAKNVVKVNENLTK
310 320 330 340 350 360
370 380 390
pF1KB8 FIAIKNKYASSKLLKISMIPQLNSKAVKDLASPLIGRS
::::::::::::::::::::::::::::::::::::::
CCDS10 FIAIKNKYASSKLLKISMIPQLNSKAVKDLASPLIGRS
370 380 390
>>CCDS3997.1 CCNB1 gene_id:891|Hs108|chr5 (433 aa)
initn: 1198 init1: 1198 opt: 1311 Z-score: 1416.3 bits: 271.0 E(32554): 1.4e-72
Smith-Waterman score: 1311; 52.7% identity (77.2% similar) in 395 aa overlap (6-391:40-427)
10 20 30
pF1KB8 MALLRRPTVSSDLENIDTGVNSKVKSHVTIRRTVL
:: .. : .: . :. ...... ... .
CCDS39 KINAENKAKINMAGAKRVPTAPAATSKPGLRPRTA--LGDIGNKVSEQLQAKMPMKKEAK
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 EEIGNRVTTRAAQVAKKAQNTKVPVQ-PTKTTNVNKQLKPTASVKPVQMEKLAPKG----
..: . .. : . :::. :. ... . .: .::. :::.:.
CCDS39 PSATGKVIDK--KLPKPLE--KVPMLVPVPVSEPVPEPEPEPEPEPVKEEKLSPEPILVD
70 80 90 100 110 120
100 110 120 130 140
pF1KB8 -PSPTPEDVSM---KEENLCQAFSDALLCKIEDIDNEDWENPQLCSDYVKDIYQYLRQLE
::.: ..: ::.:::::::..: ..:.: :: .:.:::.:::::: ::::::
CCDS39 TASPSPMETSGCAPAEEDLCQAFSDVILA-VNDVDAEDGADPNLCSEYVKDIYAYLRQLE
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB8 VLQSINPHFLDGRDINGRMRAILVDWLVQVHSKFRLLQETLYMCVGIMDRFLQVQPVSRK
:.. :..: ::...: :::::.::::::. ::::::::.:: :.:.:::.: . : .:
CCDS39 EEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNCVPKK
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB8 KLQLVGITALLLASKYEEMFSPNIEDFVYITDNAYTSSQIREMETLILKELKFELGRPLP
:::::.::...:::::::. :.: ::...:::.::. :::.:: ::. :.: ::::::
CCDS39 MLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLP
250 260 270 280 290 300
270 280 290 300 310 320
pF1KB8 LHFLRRASKAGEVDVEQHTLAKYLMELTLIDYDMVHYHPSKVAAAASCLSQKVLGQGKWN
::::::::: ::::::::::::::::::..::::::. ::..::.: ::. :.: .:.:.
CCDS39 LHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFCLALKILDNGEWT
310 320 330 340 350 360
330 340 350 360 370 380
pF1KB8 LKQQYYTGYTENEVLEVMQHMAKNVVKVNENLTKFIAIKNKYASSKLLKISMIPQLNSKA
:.: .:::. .: ::::.::::: ::..::: ...:::::.:: ::: .:::::
CCDS39 PTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLTKHMTVKNKYATSKHAKISTLPQLNSAL
370 380 390 400 410 420
390
pF1KB8 VKDLASPLIGRS
:.:::
CCDS39 VQDLAKAVAKV
430
>>CCDS45031.1 CCNA1 gene_id:8900|Hs108|chr13 (421 aa)
initn: 587 init1: 429 opt: 617 Z-score: 670.0 bits: 132.9 E(32554): 5.3e-31
Smith-Waterman score: 617; 39.6% identity (71.1% similar) in 270 aa overlap (112-379:146-412)
90 100 110 120 130 140
pF1KB8 QMEKLAPKGPSPTPEDVSMKEENLCQAFSDALLCKIEDIDNEDWENPQLCSDYVKDIYQY
.:: . :::.. . .. ..:...::::
CCDS45 DVYEVDTGTLKSDLHFLLDFNTVSPMLVDSSLLSQSEDISSLGTDVINV-TEYAEEIYQY
120 130 140 150 160 170
150 160 170 180 190 200
pF1KB8 LRQLEVLQSINPHFLDGR-DINGRMRAILVDWLVQVHSKFRLLQETLYMCVGIMDRFLQV
::. :. . . :.. . ::. ::.:::::::.: ...: ::::. :...::::.
CCDS45 LREAEIRHRPKAHYMKKQPDITEGMRTILVDWLVEVGEEYKLRAETLYLAVNFLDRFLSC
180 190 200 210 220 230
210 220 230 240 250 260
pF1KB8 QPVSRKKLQLVGITALLLASKYEEMFSPNIEDFVYITDNAYTSSQIREMETLILKELKFE
. : : :::::: .:.::::::::.. :....::::::..::. :. .:: :.:: : :.
CCDS45 MSVLRGKLQLVGTAAMLLASKYEEIYPPEVDEFVYITDDTYTKRQLLKMEHLLLKVLAFD
240 250 260 270 280 290
270 280 290 300 310
pF1KB8 LGRPLPLHFLRRASKAGEVDVEQHTLAKYLMELTLIDYD-MVHYHPSKVAAAASCLSQKV
: : .:: . . : :. ..::::. ::.:.. : ...: :: .:::: ::.. .
CCDS45 LTVPTTNQFLLQYLRRQGVCVRTENLAKYVAELSLLEADPFLKYLPSLIAAAAFCLANYT
300 310 320 330 340 350
320 330 340 350 360 370
pF1KB8 LGQGKWNLKQQYYTGYTENEVLEVMQHMAKNVVKVNENLTKFIAIKNKYASSKLLKISMI
... : .:::. .:.. .... : . . . . ::..:: .:: : .:..
CCDS45 VNKHFWPETLAAFTGYSLSEIVPCLSELHKAYLDIPHRPQQ--AIREKYKASKYLCVSLM
360 370 380 390 400 410
380 390
pF1KB8 PQLNSKAVKDLASPLIGRS
CCDS45 EPPAVLLLQ
420
>>CCDS45030.1 CCNA1 gene_id:8900|Hs108|chr13 (464 aa)
initn: 587 init1: 429 opt: 617 Z-score: 669.4 bits: 132.9 E(32554): 5.8e-31
Smith-Waterman score: 617; 39.6% identity (71.1% similar) in 270 aa overlap (112-379:189-455)
90 100 110 120 130 140
pF1KB8 QMEKLAPKGPSPTPEDVSMKEENLCQAFSDALLCKIEDIDNEDWENPQLCSDYVKDIYQY
.:: . :::.. . .. ..:...::::
CCDS45 DVYEVDTGTLKSDLHFLLDFNTVSPMLVDSSLLSQSEDISSLGTDVINV-TEYAEEIYQY
160 170 180 190 200 210
150 160 170 180 190 200
pF1KB8 LRQLEVLQSINPHFLDGR-DINGRMRAILVDWLVQVHSKFRLLQETLYMCVGIMDRFLQV
::. :. . . :.. . ::. ::.:::::::.: ...: ::::. :...::::.
CCDS45 LREAEIRHRPKAHYMKKQPDITEGMRTILVDWLVEVGEEYKLRAETLYLAVNFLDRFLSC
220 230 240 250 260 270
210 220 230 240 250 260
pF1KB8 QPVSRKKLQLVGITALLLASKYEEMFSPNIEDFVYITDNAYTSSQIREMETLILKELKFE
. : : :::::: .:.::::::::.. :....::::::..::. :. .:: :.:: : :.
CCDS45 MSVLRGKLQLVGTAAMLLASKYEEIYPPEVDEFVYITDDTYTKRQLLKMEHLLLKVLAFD
280 290 300 310 320 330
270 280 290 300 310
pF1KB8 LGRPLPLHFLRRASKAGEVDVEQHTLAKYLMELTLIDYD-MVHYHPSKVAAAASCLSQKV
: : .:: . . : :. ..::::. ::.:.. : ...: :: .:::: ::.. .
CCDS45 LTVPTTNQFLLQYLRRQGVCVRTENLAKYVAELSLLEADPFLKYLPSLIAAAAFCLANYT
340 350 360 370 380 390
320 330 340 350 360 370
pF1KB8 LGQGKWNLKQQYYTGYTENEVLEVMQHMAKNVVKVNENLTKFIAIKNKYASSKLLKISMI
... : .:::. .:.. .... : . . . . ::..:: .:: : .:..
CCDS45 VNKHFWPETLAAFTGYSLSEIVPCLSELHKAYLDIPHRPQQ--AIREKYKASKYLCVSLM
400 410 420 430 440 450
380 390
pF1KB8 PQLNSKAVKDLASPLIGRS
CCDS45 EPPAVLLLQ
460
>>CCDS9357.1 CCNA1 gene_id:8900|Hs108|chr13 (465 aa)
initn: 587 init1: 429 opt: 617 Z-score: 669.4 bits: 132.9 E(32554): 5.8e-31
Smith-Waterman score: 617; 39.6% identity (71.1% similar) in 270 aa overlap (112-379:190-456)
90 100 110 120 130 140
pF1KB8 QMEKLAPKGPSPTPEDVSMKEENLCQAFSDALLCKIEDIDNEDWENPQLCSDYVKDIYQY
.:: . :::.. . .. ..:...::::
CCDS93 DVYEVDTGTLKSDLHFLLDFNTVSPMLVDSSLLSQSEDISSLGTDVINV-TEYAEEIYQY
160 170 180 190 200 210
150 160 170 180 190 200
pF1KB8 LRQLEVLQSINPHFLDGR-DINGRMRAILVDWLVQVHSKFRLLQETLYMCVGIMDRFLQV
::. :. . . :.. . ::. ::.:::::::.: ...: ::::. :...::::.
CCDS93 LREAEIRHRPKAHYMKKQPDITEGMRTILVDWLVEVGEEYKLRAETLYLAVNFLDRFLSC
220 230 240 250 260 270
210 220 230 240 250 260
pF1KB8 QPVSRKKLQLVGITALLLASKYEEMFSPNIEDFVYITDNAYTSSQIREMETLILKELKFE
. : : :::::: .:.::::::::.. :....::::::..::. :. .:: :.:: : :.
CCDS93 MSVLRGKLQLVGTAAMLLASKYEEIYPPEVDEFVYITDDTYTKRQLLKMEHLLLKVLAFD
280 290 300 310 320 330
270 280 290 300 310
pF1KB8 LGRPLPLHFLRRASKAGEVDVEQHTLAKYLMELTLIDYD-MVHYHPSKVAAAASCLSQKV
: : .:: . . : :. ..::::. ::.:.. : ...: :: .:::: ::.. .
CCDS93 LTVPTTNQFLLQYLRRQGVCVRTENLAKYVAELSLLEADPFLKYLPSLIAAAAFCLANYT
340 350 360 370 380 390
320 330 340 350 360 370
pF1KB8 LGQGKWNLKQQYYTGYTENEVLEVMQHMAKNVVKVNENLTKFIAIKNKYASSKLLKISMI
... : .:::. .:.. .... : . . . . ::..:: .:: : .:..
CCDS93 VNKHFWPETLAAFTGYSLSEIVPCLSELHKAYLDIPHRPQQ--AIREKYKASKYLCVSLM
400 410 420 430 440 450
380 390
pF1KB8 PQLNSKAVKDLASPLIGRS
CCDS93 EPPAVLLLQ
460
>>CCDS14331.1 CCNB3 gene_id:85417|Hs108|chrX (1395 aa)
initn: 487 init1: 458 opt: 542 Z-score: 581.6 bits: 118.3 E(32554): 4.5e-26
Smith-Waterman score: 547; 30.2% identity (62.7% similar) in 391 aa overlap (1-383:1013-1376)
10 20
pF1KB8 MALLRRPTVSSDL---ENIDTGVNSKVKSH
..: ..::....: : . . :
CCDS14 ESITSKSSIATMTSVGKSGTINEAFLFEDMITLNEKPTTGKELSFKEPLALQESPTCKED
990 1000 1010 1020 1030 1040
30 40 50 60 70 80
pF1KB8 VTIRRTVLEEIGNR---VTTRAAQVAKKAQ-NTKVPVQPTKTTNVNKQLKPTASVKPVQM
. .. .. .::. .: ....:.. : . : ..::. .. . .:: :::.
CCDS14 TFLETFLIPQIGTSPYVFSTTPESITEKSSIATMTSVGKSRTTTESSACE-SASDKPVSP
1050 1060 1070 1080 1090 1100
90 100 110 120 130 140
pF1KB8 EKLAPKGPSPTPEDVSMKEENLCQAFSDALLCKIEDIDNEDWENPQLCSDYVKDIYQYLR
. :: ::.... .: ::: :: .:.. :.:.:..:..
CCDS14 QA---KG---TPKEITPRE----------------DID-EDSSDPSFNPMYAKEIFSYMK
1110 1120 1130
150 160 170 180 190 200
pF1KB8 QLEVLQSINPHFLDGR-DINGRMRAILVDWLVQVHSKFRLLQETLYMCVGIMDRFLQVQP
. : : : ... . .:.. ::::::::::.:. .:.. .::::. : ..: .:.
CCDS14 EREE-QFILTDYMNRQIEITSDMRAILVDWLVEVQVSFEMTHETLYLAVKLVDLYLMKAV
1140 1150 1160 1170 1180 1190
210 220 230 240 250 260
pF1KB8 VSRKKLQLVGITALLLASKYEEMFSPNIEDFVYITDNAYTSSQIREMETLILKELKFELG
.. ::::.: ::...:.:.:: :: ..::::: :. : :.. :: ::. :: ...
CCDS14 CKKDKLQLLGATAFMIAAKFEEHNSPRVDDFVYICDDNYQRSEVLSMEINILNVLKCDIN
1200 1210 1220 1230 1240 1250
270 280 290 300 310 320
pF1KB8 RPLPLHFLRRASKAGEVDVEQHTLAKYLMELTLIDYDMVHYHPSKVAAAASCLSQKVLGQ
:. ::::: .. ..... ::..:. :.:: .: .:. . ::.:::. :. .
CCDS14 IPIAYHFLRRYARCIHTNMKTLTLSRYICEMTLQEYHYVQEKASKLAAASLLLALYMKKL
1260 1270 1280 1290 1300 1310
330 340 350 360 370 380
pF1KB8 GKWNLKQQYYTGYTENEVLEVMQHMAKNVVKVNENLTKFIAIKNKYASSKLLKISMIPQL
: : ..:.::. .:. ..... : .. . . : :. ::. ..... :: :
CCDS14 GYWVPFLEHYSGYSISELHPLVRQLNKLLTFSSYDSLK--AVYYKYSHPVFFEVAKIPAL
1320 1330 1340 1350 1360 1370
390
pF1KB8 NSKAVKDLASPLIGRS
.
CCDS14 DMLKLEEILNCDCEAQGLVL
1380 1390
>>CCDS3723.1 CCNA2 gene_id:890|Hs108|chr4 (432 aa)
initn: 508 init1: 380 opt: 534 Z-score: 580.6 bits: 116.4 E(32554): 5.1e-26
Smith-Waterman score: 534; 34.5% identity (64.0% similar) in 336 aa overlap (55-379:93-424)
30 40 50 60 70 80
pF1KB8 KSHVTIRRTVLEEIGNRVTTRAAQVAKKAQNTKVPVQPTKTTNVNK--QLKPTASVKPVQ
:.: :. .. ...: : ::. : : .
CCDS37 QQQRPKTRRVAPLKDLPVNDEHVTVPPWKANSKQPAFTIHVDEAEKEAQKKPAESQKIER
70 80 90 100 110 120
90 100 110 120 130
pF1KB8 MEKLAPKG----PSPTPEDVSMKEENLCQAFSDALLCKIEDI-DNEDWENPQLCSDYVKD
. :: .. :.: : . . . .: . . : ..: . . :: .:
CCDS37 EDALAFNSAISLPGPRKPLVPL-DYPMDGSFESPHTMDMSIILEDEKPVSVNEVPDYHED
130 140 150 160 170 180
140 150 160 170 180 190
pF1KB8 IYQYLRQLEVLQSINPHFLDGR-DINGRMRAILVDWLVQVHSKFRLLQETLYMCVGIMDR
:. :::..:: . . .. . ::.. ::::::::::.: ...: .:::.. :. .::
CCDS37 IHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDR
190 200 210 220 230 240
200 210 220 230 240 250
pF1KB8 FLQVQPVSRKKLQLVGITALLLASKYEEMFSPNIEDFVYITDNAYTSSQIREMETLILKE
::. . : : :::::: .:.:::::.::.. :.. .::::::..::..:. .:: :.::
CCDS37 FLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKV
250 260 270 280 290 300
260 270 280 290 300 310
pF1KB8 LKFELGRPLPLHFLRRAS-KAGEVDVEQHTLAKYLMELTLIDYD-MVHYHPSKVAAAASC
: :.:. : .:: . . .. . ..:: .: ::.::: : ...: :: .:.::
CCDS37 LTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFH
310 320 330 340 350 360
320 330 340 350 360 370
pF1KB8 LS-QKVLGQGKWNLKQQYYTGYTENEVLEVMQHMAKNVVKVNENLTKFIAIKNKYASSKL
:. : ::. : . :::: . . .. . .. .:. .. . .:..:: .::
CCDS37 LALYTVTGQS-WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQ--SIREKYKNSKY
370 380 390 400 410
380 390
pF1KB8 LKISMIPQLNSKAVKDLASPLIGRS
.:..
CCDS37 HGVSLLNPPETLNL
420 430
>>CCDS14332.1 CCNB3 gene_id:85417|Hs108|chrX (291 aa)
initn: 417 init1: 374 opt: 407 Z-score: 446.6 bits: 91.0 E(32554): 1.5e-18
Smith-Waterman score: 407; 33.8% identity (67.2% similar) in 204 aa overlap (180-383:71-272)
150 160 170 180 190 200
pF1KB8 SINPHFLDGRDINGRMRAILVDWLVQVHSKFRLLQETLYMCVGIMDRFLQVQPVSRKKLQ
:.. .::::. : ..: .:. .. :::
CCDS14 ISPSSLQESPSSLQGALKKRSAFEDLTNVSFEMTHETLYLAVKLVDLYLMKAVCKKDKLQ
50 60 70 80 90 100
210 220 230 240 250 260
pF1KB8 LVGITALLLASKYEEMFSPNIEDFVYITDNAYTSSQIREMETLILKELKFELGRPLPLHF
:.: ::...:.:.:: :: ..::::: :. : :.. :: ::. :: ... :. ::
CCDS14 LLGATAFMIAAKFEEHNSPRVDDFVYICDDNYQRSEVLSMEINILNVLKCDINIPIAYHF
110 120 130 140 150 160
270 280 290 300 310 320
pF1KB8 LRRASKAGEVDVEQHTLAKYLMELTLIDYDMVHYHPSKVAAAASCLSQKVLGQGKWNLKQ
::: .. ..... ::..:. :.:: .: .:. . ::.:::. :. . : :
CCDS14 LRRYARCIHTNMKTLTLSRYICEMTLQEYHYVQEKASKLAAASLLLALYMKKLGYWVPFL
170 180 190 200 210 220
330 340 350 360 370 380
pF1KB8 QYYTGYTENEVLEVMQHMAKNVVKVNENLTKFIAIKNKYASSKLLKISMIPQLNSKAVKD
..:.::. .:. ..... : .. . . : :. ::. ..... :: :.
CCDS14 EHYSGYSISELHPLVRQLNKLLTFSSYDSLK--AVYYKYSHPVFFEVAKIPALDMLKLEE
230 240 250 260 270
390
pF1KB8 LASPLIGRS
CCDS14 ILNCDCEAQGLVL
280 290
>>CCDS34157.1 CCNO gene_id:10309|Hs108|chr5 (350 aa)
initn: 343 init1: 240 opt: 320 Z-score: 351.8 bits: 73.8 E(32554): 2.8e-13
Smith-Waterman score: 320; 25.3% identity (58.4% similar) in 293 aa overlap (43-320:10-295)
20 30 40 50 60 70
pF1KB8 LENIDTGVNSKVKSHVTIRRTVLEEIGNRVTTRAAQVAKKA--QNTKVPVQPTKTTNVNK
.. ::..... :: ..::. .. . .
CCDS34 MVTPCPTSPSSPAARAGRRDNDQNLRAPVKKSRRPRLRR
10 20 30
80 90 100 110 120
pF1KB8 QLKPTASVKPVQMEK---LAPKGPSPTPEDVSMKEENLCQAFSDALLCKIEDIDNEDWEN
. .: ..: . . ::. . . . . .. : : . . . :
CCDS34 K-QPLHPLNPCPLPGDSGICDLFESPSSGSDGAESPSAARGGSP-LPGPAQPVAQLDL--
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 PQLCSDYVKDIYQYLRQLEVLQSINPHFLDGRD--INGRMRAILVDWLVQVHSKFRLLQE
: :: .. : . . : . ..:. .:. .... : :..::. :: .: : :
CCDS34 -QTFRDYGQSCYAFRKAQE--SHFHPREALARQPQVTAESRCKLLSWLIPVHRQFGLSFE
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 TLYMCVGIMDRFLQVQPVSRKKLQLVGITALLLASKYEEMFSPNIEDFVYITDNAYTSSQ
.: . :. .:::: . ::. .::.:.:.::.: : :. : ..... . .:.. .:
CCDS34 SLCLTVNTLDRFLTTTPVAADCFQLLGVTSLLIACKQVEVHPPRVKQLLALCCGAFSRQQ
160 170 180 190 200 210
250 260 270 280 290
pF1KB8 IREMETLILKELKFELGRP----LPLHFLRRASKAGEVD----VEQHTLAKYLMELTLID
. ..: ..:..:.: :: : . :: . .::... .: ..::. . ::.: :
CCDS34 LCNLECIVLHKLHFTLGAPTISFFLEHFTHARVEAGQAEASEALEAQALARGVAELSLAD
220 230 240 250 260 270
300 310 320 330 340 350
pF1KB8 YDMVHYHPSKVAAAASCLSQKVLGQGKWNLKQQYYTGYTENEVLEVMQHMAKNVVKVNEN
: .. : :: .: :....:
CCDS34 YAFTSYSPSLLAICCLALADRMLRVSRPVDLRLGDHPEAALEDCMGKLQLLVAINSTSLT
280 290 300 310 320 330
>>CCDS12551.2 CNTD2 gene_id:79935|Hs108|chr19 (307 aa)
initn: 321 init1: 297 opt: 313 Z-score: 345.1 bits: 72.3 E(32554): 6.7e-13
Smith-Waterman score: 319; 27.3% identity (58.7% similar) in 271 aa overlap (62-332:27-274)
40 50 60 70 80 90
pF1KB8 RTVLEEIGNRVTTRAAQVAKKAQNTKVPVQPTKTTNVNKQLKPTASVKPVQMEKLAPKGP
: .. .. . .:.... : . : ::
CCDS12 MLVRGRDQGSGSRLGPIVRRWAPRPSPLQSLAASLDAEPSSAAVPDGF----PAGP
10 20 30 40 50
100 110 120 130 140 150
pF1KB8 SPTPEDVSMKEENLCQAFSDALLCKIEDIDNEDWENPQLCSDYVKDIYQYLRQLEVLQSI
. .:. .. . .: .:.: :: . : .:. ::. . .::
CCDS12 TVSPRRLA-RPPGLEEALS-ALGLQGE-------------REYAGDIFAEVMVCRVL---
60 70 80 90
160 170 180 190 200 210
pF1KB8 NPHFLDGRDINGRMRAILVDWLVQVHSKFRLLQETLYMCVGIMDRFLQVQPVSRKKLQLV
: : .. .:::..:::::::: . : .:::. : ..: .:.. : ..:::.
CCDS12 -PLRALPRAVTPEMRALVVDWLVQVHEYLGLAGDTLYLAVHLLDSYLSAGRVRLHRLQLL
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB8 GITALLLASKYEEMFSPNIEDFVYITDNAYTSSQIREMETLILKELKFELGRPLPLHFLR
:.. :..: :.:: :. . .. .... ... . : ::..: :.: .: :: :
CCDS12 GVACLFVACKMEECVLPEPAFLCLLSADSFSRAELLRAERRILSRLDFRLHHPGPLLCLG
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB8 RASKAGEVDVEQHTLAKYLMELTLIDYDMVHYHPSKVAAAASCLSQKVLGQGKWNLKQQY
. . . . :: :..::.:.. . . ..:.. :::: :....: . :. .
CCDS12 LLAALAGSSPQVMLLATYFLELSLLEAEAAGWEPGRRAAAALSLAHRLLDGAGSRLQPEL
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB8 YTGYTENEVLEVMQHMAKNVVKVNENLTKFIAIKNKYASSKLLKISMIPQLNSKAVKDLA
:
CCDS12 YRCSLGGGSVWGHRSFRDLPSWSFLRSRRMRDNY
280 290 300
398 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 19:53:04 2016 done: Sat Nov 5 19:53:04 2016
Total Scan time: 2.840 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]