Result of FASTA (ccds) for pF1KB6384
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6384, 300 aa
  1>>>pF1KB6384 300 - 300 aa - 300 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7804+/-0.000715; mu= 9.8283+/- 0.044
 mean_var=103.6797+/-20.860, 0's: 0 Z-trim(112.1): 10  B-trim: 0 in 0/53
 Lambda= 0.125958
 statistics sampled from 12924 (12933) to 12924 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.397), width:  16
 Scan time:  2.760

The best scores are:                                      opt bits E(32554)
CCDS32817.1 TPGS2 gene_id:25941|Hs108|chr18        ( 300) 2024 377.6 6.2e-105
CCDS82248.1 TPGS2 gene_id:25941|Hs108|chr18        ( 248) 1490 280.5 8.6e-76
CCDS62423.1 TPGS2 gene_id:25941|Hs108|chr18        ( 227) 1485 279.6 1.5e-75
CCDS74215.1 TPGS2 gene_id:25941|Hs108|chr18        ( 232) 1485 279.6 1.5e-75
CCDS62424.1 TPGS2 gene_id:25941|Hs108|chr18        ( 304) 1486 279.8 1.7e-75
CCDS62422.1 TPGS2 gene_id:25941|Hs108|chr18        ( 265) 1241 235.3 3.8e-62
CCDS62421.1 TPGS2 gene_id:25941|Hs108|chr18        ( 257) 1184 224.9 4.9e-59
CCDS74214.1 TPGS2 gene_id:25941|Hs108|chr18        ( 130)  842 162.6 1.4e-40


>>CCDS32817.1 TPGS2 gene_id:25941|Hs108|chr18             (300 aa)
 initn: 2024 init1: 2024 opt: 2024  Z-score: 1997.3  bits: 377.6 E(32554): 6.2e-105
Smith-Waterman score: 2024; 100.0% identity (100.0% similar) in 300 aa overlap (1-300:1-300)

               10        20        30        40        50        60
pF1KB6 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 SFVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SFVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK
              250       260       270       280       290       300

>>CCDS82248.1 TPGS2 gene_id:25941|Hs108|chr18             (248 aa)
 initn: 1490 init1: 1490 opt: 1490  Z-score: 1474.2  bits: 280.5 E(32554): 8.6e-76
Smith-Waterman score: 1490; 97.3% identity (99.1% similar) in 225 aa overlap (1-225:1-225)

               10        20        30        40        50        60
pF1KB6 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETD
       :::::::::::::::::::::::::::::::::::::::  ....               
CCDS82 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKALLGLFDGSSPPVDLNNPRGR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 SFVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK
                                                                   
CCDS82 TGIRSRRF                                                    
                                                                   

>>CCDS62423.1 TPGS2 gene_id:25941|Hs108|chr18             (227 aa)
 initn: 1485 init1: 1485 opt: 1485  Z-score: 1469.8  bits: 279.6 E(32554): 1.5e-75
Smith-Waterman score: 1485; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219)

               10        20        30        40        50        60
pF1KB6 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETD
       :::::::::::::::::::::::::::::::::::::::                     
CCDS62 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKVREEHLPL             
              190       200       210       220                    

              250       260       270       280       290       300
pF1KB6 SFVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK

>>CCDS74215.1 TPGS2 gene_id:25941|Hs108|chr18             (232 aa)
 initn: 1485 init1: 1485 opt: 1485  Z-score: 1469.7  bits: 279.6 E(32554): 1.5e-75
Smith-Waterman score: 1485; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219)

               10        20        30        40        50        60
pF1KB6 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETD
       :::::::::::::::::::::::::::::::::::::::                     
CCDS74 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKPKGSEGRSKRGCF        
              190       200       210       220       230          

              250       260       270       280       290       300
pF1KB6 SFVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK

>>CCDS62424.1 TPGS2 gene_id:25941|Hs108|chr18             (304 aa)
 initn: 1485 init1: 1485 opt: 1486  Z-score: 1468.9  bits: 279.8 E(32554): 1.7e-75
Smith-Waterman score: 1486; 97.8% identity (99.1% similar) in 224 aa overlap (1-224:1-224)

               10        20        30        40        50        60
pF1KB6 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETD
       :::::::::::::::::::::::::::::::::::::::  ...                
CCDS62 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKITYNIKMNRRKCVHWKLAVEP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 SFVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK
                                                                   
CCDS62 LQWELRSCVSAGMGTGHKQRVSSMKPRSCSVCSRRQSNSMGTTVSQSFLSYGKNVLFFTV
              250       260       270       280       290       300

>>CCDS62422.1 TPGS2 gene_id:25941|Hs108|chr18             (265 aa)
 initn: 1241 init1: 1241 opt: 1241  Z-score: 1229.2  bits: 235.3 E(32554): 3.8e-62
Smith-Waterman score: 1729; 88.3% identity (88.3% similar) in 300 aa overlap (1-300:1-265)

               10        20        30        40        50        60
pF1KB6 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
       ::::::::::::::::::::::::                                   :
CCDS62 MPEDVKNFYLMTNGFHMTWSVKLD-----------------------------------D
               70        80                                        

              130       140       150       160       170       180
pF1KB6 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
          90       100       110       120       130       140     

              190       200       210       220       230       240
pF1KB6 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETD
         150       160       170       180       190       200     

              250       260       270       280       290       300
pF1KB6 SFVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SFVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK
         210       220       230       240       250       260     

>>CCDS62421.1 TPGS2 gene_id:25941|Hs108|chr18             (257 aa)
 initn: 1184 init1: 1184 opt: 1184  Z-score: 1173.4  bits: 224.9 E(32554): 4.9e-59
Smith-Waterman score: 1657; 85.7% identity (85.7% similar) in 300 aa overlap (1-300:1-257)

               10        20        30        40        50        60
pF1KB6 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
       ::::::::::::::::::::::::                                    
CCDS62 MPEDVKNFYLMTNGFHMTWSVKLD------------------------------------
               70        80                                        

              130       140       150       160       170       180
pF1KB6 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
              :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 -------ASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
                  90       100       110       120       130       

              190       200       210       220       230       240
pF1KB6 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 YWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQWFSMYKPITYNTNLLTEETD
       140       150       160       170       180       190       

              250       260       270       280       290       300
pF1KB6 SFVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SFVNKLDPSKVFKSKNKIVIPKKKGPVQPAGGQKGPSGPSGPSTSSTSKSSSGSGNPTRK
       200       210       220       230       240       250       

>>CCDS74214.1 TPGS2 gene_id:25941|Hs108|chr18             (130 aa)
 initn: 842 init1: 842 opt: 842  Z-score: 842.1  bits: 162.6 E(32554): 1.4e-40
Smith-Waterman score: 842; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB6 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MEEEASSPGLGCSKPHLEKLTLGITRILESSPGVTEVTIIEKPPAERHMISSWEQKNNCV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MPEDVKNFYLMTNGFHMTWSVKLDEHIIPLGSMAINSISKLTQLTQSSMYSLPNAPTLAD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LEDDTHEASDDQPEKPHFDSRSVIFELDSCNGSGKVCLVYKSGKPALAEDTEIWFLDRAL
       :::::::                                                     
CCDS74 LEDDTHEDNL                                                  
              130                                                  




300 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:44:31 2016 done: Fri Nov  4 20:44:32 2016
 Total Scan time:  2.760 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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