Result of FASTA (omim) for pF1KE0109
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0109, 136 aa
  1>>>pF1KE0109 136 - 136 aa - 136 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1991+/-0.000314; mu= 11.8023+/- 0.019
 mean_var=59.4939+/-12.169, 0's: 0 Z-trim(115.8): 27  B-trim: 45 in 1/51
 Lambda= 0.166279
 statistics sampled from 26468 (26495) to 26468 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.311), width:  16
 Scan time:  5.070

The best scores are:                                      opt bits E(85289)
NP_001002027 (OMIM: 603192) ATP synthase F(0) comp ( 136)  868 216.0 1.5e-56
NP_005166 (OMIM: 603192) ATP synthase F(0) complex ( 136)  868 216.0 1.5e-56
NP_001002258 (OMIM: 602736) ATP synthase F(0) comp ( 142)  586 148.3 3.7e-36
NP_001680 (OMIM: 602736) ATP synthase F(0) complex ( 142)  586 148.3 3.7e-36
NP_001317198 (OMIM: 603193) ATP synthase F(0) comp ( 141)  567 143.8 8.7e-35
NP_001002031 (OMIM: 603193) ATP synthase F(0) comp ( 157)  567 143.8 9.5e-35
XP_016874950 (OMIM: 603193) PREDICTED: ATP synthas ( 157)  567 143.8 9.5e-35
NP_005167 (OMIM: 603193) ATP synthase F(0) complex ( 198)  567 143.8 1.2e-34
XP_016874949 (OMIM: 603193) PREDICTED: ATP synthas ( 198)  567 143.8 1.2e-34
NP_001177258 (OMIM: 602736) ATP synthase F(0) comp ( 105)  350 91.6 3.1e-19


>>NP_001002027 (OMIM: 603192) ATP synthase F(0) complex   (136 aa)
 initn: 868 init1: 868 opt: 868  Z-score: 1136.0  bits: 216.0 E(85289): 1.5e-56
Smith-Waterman score: 868; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KE0 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA
               70        80        90       100       110       120

              130      
pF1KE0 MGLFCLMVAFLILFAM
       ::::::::::::::::
NP_001 MGLFCLMVAFLILFAM
              130      

>>NP_005166 (OMIM: 603192) ATP synthase F(0) complex sub  (136 aa)
 initn: 868 init1: 868 opt: 868  Z-score: 1136.0  bits: 216.0 E(85289): 1.5e-56
Smith-Waterman score: 868; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KE0 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA
               70        80        90       100       110       120

              130      
pF1KE0 MGLFCLMVAFLILFAM
       ::::::::::::::::
NP_005 MGLFCLMVAFLILFAM
              130      

>>NP_001002258 (OMIM: 602736) ATP synthase F(0) complex   (142 aa)
 initn: 603 init1: 533 opt: 586  Z-score: 770.1  bits: 148.3 E(85289): 3.7e-36
Smith-Waterman score: 586; 70.4% identity (79.6% similar) in 142 aa overlap (1-136:1-142)

               10        20        30        40              50    
pF1KE0 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFP------LQVARREF
       : . . :  .:.:::  .:   ::.::: :. :  :    . . :        :. .:::
NP_001 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KE0 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
       :::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
               70        80        90       100       110       120

          120       130      
pF1KE0 FALSEAMGLFCLMVAFLILFAM
       ::::::::::::::::::::::
NP_001 FALSEAMGLFCLMVAFLILFAM
              130       140  

>>NP_001680 (OMIM: 602736) ATP synthase F(0) complex sub  (142 aa)
 initn: 603 init1: 533 opt: 586  Z-score: 770.1  bits: 148.3 E(85289): 3.7e-36
Smith-Waterman score: 586; 70.4% identity (79.6% similar) in 142 aa overlap (1-136:1-142)

               10        20        30        40              50    
pF1KE0 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFP------LQVARREF
       : . . :  .:.:::  .:   ::.::: :. :  :    . . :        :. .:::
NP_001 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KE0 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
       :::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
               70        80        90       100       110       120

          120       130      
pF1KE0 FALSEAMGLFCLMVAFLILFAM
       ::::::::::::::::::::::
NP_001 FALSEAMGLFCLMVAFLILFAM
              130       140  

>>NP_001317198 (OMIM: 603193) ATP synthase F(0) complex   (141 aa)
 initn: 548 init1: 523 opt: 567  Z-score: 745.6  bits: 143.8 E(85289): 8.7e-35
Smith-Waterman score: 567; 71.9% identity (83.0% similar) in 135 aa overlap (8-136:7-141)

               10         20        30           40          50    
pF1KE0 MQTAGALFIS-PALIRCCTRGLIRPVSASFLNSP---VNSSKQPSYSNFPLQ--VARREF
              :.: :.:..  .. : ::.::  :. :   .. : .    . ::   :. : :
NP_001  MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSF
                10        20        30        40        50         

           60        70        80        90       100       110    
pF1KE0 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
       :::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
      60        70        80        90       100       110         

          120       130      
pF1KE0 FALSEAMGLFCLMVAFLILFAM
       ::::::::::::::::::::::
NP_001 FALSEAMGLFCLMVAFLILFAM
     120       130       140 

>>NP_001002031 (OMIM: 603193) ATP synthase F(0) complex   (157 aa)
 initn: 561 init1: 523 opt: 567  Z-score: 744.8  bits: 143.8 E(85289): 9.5e-35
Smith-Waterman score: 567; 71.9% identity (83.0% similar) in 135 aa overlap (8-136:23-157)

                              10         20        30           40 
pF1KE0                MQTAGALFIS-PALIRCCTRGLIRPVSASFLNSP---VNSSKQPS
                             :.: :.:..  .. : ::.::  :. :   .. : .  
NP_001 MPELILSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSL
               10        20        30        40        50        60

                50        60        70        80        90         
pF1KE0 YSNFPLQ--VARREFQTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR
         . ::   :. : ::::..::::::::::::::::::::::::::::::::::::::::
NP_001 AVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR
               70        80        90       100       110       120

     100       110       120       130      
pF1KE0 NPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
       :::::::::::::::::::::::::::::::::::::
NP_001 NPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
              130       140       150       

>>XP_016874950 (OMIM: 603193) PREDICTED: ATP synthase F(  (157 aa)
 initn: 561 init1: 523 opt: 567  Z-score: 744.8  bits: 143.8 E(85289): 9.5e-35
Smith-Waterman score: 567; 71.9% identity (83.0% similar) in 135 aa overlap (8-136:23-157)

                              10         20        30           40 
pF1KE0                MQTAGALFIS-PALIRCCTRGLIRPVSASFLNSP---VNSSKQPS
                             :.: :.:..  .. : ::.::  :. :   .. : .  
XP_016 MPELILSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSL
               10        20        30        40        50        60

                50        60        70        80        90         
pF1KE0 YSNFPLQ--VARREFQTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR
         . ::   :. : ::::..::::::::::::::::::::::::::::::::::::::::
XP_016 AVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR
               70        80        90       100       110       120

     100       110       120       130      
pF1KE0 NPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
       :::::::::::::::::::::::::::::::::::::
XP_016 NPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
              130       140       150       

>>NP_005167 (OMIM: 603193) ATP synthase F(0) complex sub  (198 aa)
 initn: 548 init1: 523 opt: 567  Z-score: 743.3  bits: 143.8 E(85289): 1.2e-34
Smith-Waterman score: 567; 71.9% identity (83.0% similar) in 135 aa overlap (8-136:64-198)

                                      10         20        30      
pF1KE0                        MQTAGALFIS-PALIRCCTRGLIRPVSASFLNSP---
                                     :.: :.:..  .. : ::.::  :. :   
NP_005 RCSAPLCLLCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL
            40        50        60        70        80        90   

            40          50        60        70        80        90 
pF1KE0 VNSSKQPSYSNFPLQ--VARREFQTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFG
       .. : .    . ::   :. : ::::..::::::::::::::::::::::::::::::::
NP_005 TDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFG
           100       110       120       130       140       150   

             100       110       120       130      
pF1KE0 SLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
       :::::::::::::::::::::::::::::::::::::::::::::
NP_005 SLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
           160       170       180       190        

>>XP_016874949 (OMIM: 603193) PREDICTED: ATP synthase F(  (198 aa)
 initn: 548 init1: 523 opt: 567  Z-score: 743.3  bits: 143.8 E(85289): 1.2e-34
Smith-Waterman score: 567; 71.9% identity (83.0% similar) in 135 aa overlap (8-136:64-198)

                                      10         20        30      
pF1KE0                        MQTAGALFIS-PALIRCCTRGLIRPVSASFLNSP---
                                     :.: :.:..  .. : ::.::  :. :   
XP_016 RCSAPLCLLCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL
            40        50        60        70        80        90   

            40          50        60        70        80        90 
pF1KE0 VNSSKQPSYSNFPLQ--VARREFQTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFG
       .. : .    . ::   :. : ::::..::::::::::::::::::::::::::::::::
XP_016 TDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFG
           100       110       120       130       140       150   

             100       110       120       130      
pF1KE0 SLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
       :::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
           160       170       180       190        

>>NP_001177258 (OMIM: 602736) ATP synthase F(0) complex   (105 aa)
 initn: 367 init1: 297 opt: 350  Z-score: 466.2  bits: 91.6 E(85289): 3.1e-19
Smith-Waterman score: 350; 60.0% identity (72.4% similar) in 105 aa overlap (1-99:1-105)

               10        20        30        40              50    
pF1KE0 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFP------LQVARREF
       : . . :  .:.:::  .:   ::.::: :. :  :    . . :        :. .:::
NP_001 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KE0 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
       :::..::::::::::::::::::::::::::::::::::::::::               
NP_001 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR               
               70        80        90       100                    

          120       130      
pF1KE0 FALSEAMGLFCLMVAFLILFAM




136 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:52:35 2016 done: Fri Nov  4 02:52:36 2016
 Total Scan time:  5.070 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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