Result of FASTA (ccds) for pF1KE0435
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0435, 257 aa
  1>>>pF1KE0435 257 - 257 aa - 257 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3262+/-0.000943; mu= 14.0779+/- 0.056
 mean_var=62.4440+/-13.170, 0's: 0 Z-trim(104.4): 29  B-trim: 0 in 0/49
 Lambda= 0.162304
 statistics sampled from 7879 (7893) to 7879 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.606), E-opt: 0.2 (0.242), width:  16
 Scan time:  2.220

The best scores are:                                      opt bits E(32554)
CCDS10184.1 APH1B gene_id:83464|Hs108|chr15        ( 257) 1679 401.8 2.4e-112
CCDS41391.1 APH1A gene_id:51107|Hs108|chr1         ( 247)  999 242.6   2e-64
CCDS41390.1 APH1A gene_id:51107|Hs108|chr1         ( 265)  994 241.4 4.7e-64
CCDS45276.1 APH1B gene_id:83464|Hs108|chr15        ( 216)  755 185.4 2.7e-47
CCDS58025.1 APH1A gene_id:51107|Hs108|chr1         ( 195)  517 129.7 1.5e-30


>>CCDS10184.1 APH1B gene_id:83464|Hs108|chr15             (257 aa)
 initn: 1679 init1: 1679 opt: 1679  Z-score: 2130.6  bits: 401.8 E(32554): 2.4e-112
Smith-Waterman score: 1679; 99.6% identity (100.0% similar) in 257 aa overlap (1-257:1-257)

               10        20        30        40        50        60
pF1KE0 MTAAVFFGCAFIAFGPALALYVFTIATEPLRIIFLIAGAFFWLVSLLISSLVWFMARVII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MTAAVFFGCAFIAFGPALALYVFTIATEPLRIIFLIAGAFFWLVSLLISSLVWFMARVII
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DNKDGPTQKYLLIFGAFVSVYIREMFRFAYYKLLKKASEGLKSINPGETAPSMRLLAYVS
       ::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS10 DNKDGPTQKYLLIFGAFVSVYIQEMFRFAYYKLLKKASEGLKSINPGETAPSMRLLAYVS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSPQFFLYSAFMTLVIILLHVFWGIVFFDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSPQFFLYSAFMTLVIILLHVFWGIVFFDG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 CEKKKWGILLIVLLTHLLVSAQTFISSYYGINLASAFIILVLMGTWAFLAAGGSCRSLKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CEKKKWGILLIVLLTHLLVSAQTFISSYYGINLASAFIILVLMGTWAFLAAGGSCRSLKL
              190       200       210       220       230       240

              250       
pF1KE0 CLLCQDKNFLLYNQRSR
       :::::::::::::::::
CCDS10 CLLCQDKNFLLYNQRSR
              250       

>>CCDS41391.1 APH1A gene_id:51107|Hs108|chr1              (247 aa)
 initn: 972 init1: 536 opt: 999  Z-score: 1270.3  bits: 242.6 E(32554): 2e-64
Smith-Waterman score: 999; 58.7% identity (82.6% similar) in 247 aa overlap (1-246:1-247)

               10        20        30        40        50        60
pF1KE0 MTAAVFFGCAFIAFGPALALYVFTIATEPLRIIFLIAGAFFWLVSLLISSLVWFMARVII
       : :::::::.:.:::::.::...:.: .:::.:.:.:::::::::::..:.:::.   . 
CCDS41 MGAAVFFGCTFVAFGPAFALFLITVAGDPLRVIILVAGAFFWLVSLLLASVVWFILVHVT
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KE0 DNKDGPTQKYLLIFGAFVSVYIREMFRFAYYKLLKKASEGLKSINPGETAP-SMRLLAYV
       : .:.  :  :::::: ::: ..:.::::::::::::.::: :..    .: :.: .:::
CCDS41 DRSDARLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYV
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE0 SGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSPQFFLYSAFMTLVIILLHVFWGIVFFD
       :::.:::.::::: .: :.:.::::.:::::::: .:: :::.: .:::::.:::.::::
CCDS41 SGLSFGIISGVFSVINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFD
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KE0 GCEKKKWGILLIVLLTHLLVSAQTFISSYYGINLASAFIILVLMGTWAFLAAGGSCRSLK
       .::....  : .:. .:::.:. ::.. .:  .:   . . : :: :::..:::: ::..
CCDS41 ACERRRYWALGLVVGSHLLTSGLTFLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSIQ
              190       200       210       220       230       240

     240       250       
pF1KE0 LCLLCQDKNFLLYNQRSR
         :::.:           
CCDS41 RSLLCKD           
                         

>>CCDS41390.1 APH1A gene_id:51107|Hs108|chr1              (265 aa)
 initn: 963 init1: 527 opt: 994  Z-score: 1263.5  bits: 241.4 E(32554): 4.7e-64
Smith-Waterman score: 994; 56.8% identity (81.3% similar) in 257 aa overlap (1-253:1-257)

               10        20        30        40        50        60
pF1KE0 MTAAVFFGCAFIAFGPALALYVFTIATEPLRIIFLIAGAFFWLVSLLISSLVWFMARVII
       : :::::::.:.:::::.::...:.: .:::.:.:.:::::::::::..:.:::.   . 
CCDS41 MGAAVFFGCTFVAFGPAFALFLITVAGDPLRVIILVAGAFFWLVSLLLASVVWFILVHVT
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KE0 DNKDGPTQKYLLIFGAFVSVYIREMFRFAYYKLLKKASEGLKSINPGETAP-SMRLLAYV
       : .:.  :  :::::: ::: ..:.::::::::::::.::: :..    .: :.: .:::
CCDS41 DRSDARLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYV
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE0 SGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSPQFFLYSAFMTLVIILLHVFWGIVFFD
       :::.:::.::::: .: :.:.::::.:::::::: .:: :::.: .:::::.:::.::::
CCDS41 SGLSFGIISGVFSVINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFD
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KE0 GCEKKKWGILLIVLLTHLLVSAQTFISSYYGINLASAFIILVLMGTWAFLAAGGSCRSLK
       .::....  : .:. .:::.:. ::.. .:  .:   . . : :: :::..:::: ::..
CCDS41 ACERRRYWALGLVVGSHLLTSGLTFLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSIQ
              190       200       210       220       230       240

     240          250           
pF1KE0 LCLLC---QDKNFLLYNQRSR    
         :::   .:.  ..:.        
CCDS41 RSLLCRRQEDSRVMVYSALRIPPED
              250       260     

>>CCDS45276.1 APH1B gene_id:83464|Hs108|chr15             (216 aa)
 initn: 777 init1: 755 opt: 755  Z-score: 962.4  bits: 185.4 E(32554): 2.7e-47
Smith-Waterman score: 1313; 83.7% identity (84.0% similar) in 257 aa overlap (1-257:1-216)

               10        20        30        40        50        60
pF1KE0 MTAAVFFGCAFIAFGPALALYVFTIATEPLRIIFLIAGAFFWLVSLLISSLVWFMARVII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MTAAVFFGCAFIAFGPALALYVFTIATEPLRIIFLIAGAFFWLVSLLISSLVWFMARVII
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 DNKDGPTQKYLLIFGAFVSVYIREMFRFAYYKLLKKASEGLKSINPGETAPSMRLLAYVS
       ::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::  
CCDS45 DNKDGPTQKYLLIFGAFVSVYIQEMFRFAYYKLLKKASEGLKSINPGETAPSMRLLAY--
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KE0 GLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSPQFFLYSAFMTLVIILLHVFWGIVFFDG
                                              :::::::::::::::::::::
CCDS45 ---------------------------------------AFMTLVIILLHVFWGIVFFDG
                                             120       130         

              190       200       210       220       230       240
pF1KE0 CEKKKWGILLIVLLTHLLVSAQTFISSYYGINLASAFIILVLMGTWAFLAAGGSCRSLKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 CEKKKWGILLIVLLTHLLVSAQTFISSYYGINLASAFIILVLMGTWAFLAAGGSCRSLKL
     140       150       160       170       180       190         

              250       
pF1KE0 CLLCQDKNFLLYNQRSR
       :::::::::::::::::
CCDS45 CLLCQDKNFLLYNQRSR
     200       210      

>>CCDS58025.1 APH1A gene_id:51107|Hs108|chr1              (195 aa)
 initn: 683 init1: 509 opt: 517  Z-score: 661.9  bits: 129.7 E(32554): 1.5e-30
Smith-Waterman score: 560; 40.2% identity (59.8% similar) in 256 aa overlap (1-253:1-187)

               10        20        30        40        50        60
pF1KE0 MTAAVFFGCAFIAFGPALALYVFTIATEPLRIIFLIAGAFFWLVSLLISSLVWFMARVII
       : :::::::.:.:::::.::...:.: .:::.:.:.::          :.:         
CCDS58 MGAAVFFGCTFVAFGPAFALFLITVAGDPLRVIILVAGRC--------SAL---------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KE0 DNKDGPTQKYLLIFGAFVSVYIREMFRFAYYKLLKKASEGLKSINPGETAPSMRLLAYVS
            :: . :                                               .:
CCDS58 -----PTTSCL-----------------------------------------------IS
                                                                50 

              130       140       150       160       170       180
pF1KE0 GLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSPQFFLYSAFMTLVIILLHVFWGIVFFDG
       ::.:::.::::: .: :.:.::::.:::::::: .:: :::.: .:::::.:::.::::.
CCDS58 GLSFGIISGVFSVINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDA
              60        70        80        90       100       110 

              190       200       210       220       230       240
pF1KE0 CEKKKWGILLIVLLTHLLVSAQTFISSYYGINLASAFIILVLMGTWAFLAAGGSCRSLKL
       ::....  : .:. .:::.:. ::.. .:  .:   . . : :: :::..:::: ::.. 
CCDS58 CERRRYWALGLVVGSHLLTSGLTFLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSIQR
             120       130       140       150       160       170 

                 250           
pF1KE0 CLLC---QDKNFLLYNQRSR    
        :::   .:.  ..:.        
CCDS58 SLLCRRQEDSRVMVYSALRIPPED
             180       190     




257 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 09:19:27 2016 done: Thu Nov  3 09:19:27 2016
 Total Scan time:  2.220 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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