FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6710, 130 aa
  1>>>pF1KB6710 130 - 130 aa - 130 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0043+/-0.000354; mu= 11.2221+/- 0.022
 mean_var=45.5387+/- 9.092, 0's: 0 Z-trim(113.0): 28  B-trim: 0 in 0/54
 Lambda= 0.190057
 statistics sampled from 22130 (22147) to 22130 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.26), width:  16
 Scan time:  4.200

The best scores are:                                      opt bits E(85289)
NP_001010 (OMIM: 603674) 40S ribosomal protein S15 ( 130)  860 242.9 1.1e-64
NP_001025180 (OMIM: 603674) 40S ribosomal protein  ( 130)  860 242.9 1.1e-64


>>NP_001010 (OMIM: 603674) 40S ribosomal protein S15a [H  (130 aa)
 initn: 860 init1: 860 opt: 860  Z-score: 1282.2  bits: 242.9 E(85289): 1.1e-64
Smith-Waterman score: 860; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB6 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 IVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH
               70        80        90       100       110       120

              130
pF1KB6 TGGKILGFFF
       ::::::::::
NP_001 TGGKILGFFF
              130

>>NP_001025180 (OMIM: 603674) 40S ribosomal protein S15a  (130 aa)
 initn: 860 init1: 860 opt: 860  Z-score: 1282.2  bits: 242.9 E(85289): 1.1e-64
Smith-Waterman score: 860; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB6 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 IVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH
               70        80        90       100       110       120

              130
pF1KB6 TGGKILGFFF
       ::::::::::
NP_001 TGGKILGFFF
              130




130 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:59:10 2016 done: Sat Nov  5 18:59:11 2016
 Total Scan time:  4.200 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]