Result of FASTA (omim) for pF1KB9980
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9980, 708 aa
  1>>>pF1KB9980 708 - 708 aa - 708 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2430+/-0.000533; mu= 12.0205+/- 0.033
 mean_var=162.1644+/-31.973, 0's: 0 Z-trim(112.7): 13  B-trim: 0 in 0/52
 Lambda= 0.100716
 statistics sampled from 21686 (21696) to 21686 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.604), E-opt: 0.2 (0.254), width:  16
 Scan time: 11.800

The best scores are:                                      opt bits E(85289)
XP_016873261 (OMIM: 600814,604391) PREDICTED: doub ( 708) 4644 687.9 3.6e-197
NP_005582 (OMIM: 600814,604391) double-strand brea ( 708) 4644 687.9 3.6e-197
XP_011541139 (OMIM: 600814,604391) PREDICTED: doub ( 708) 4644 687.9 3.6e-197
NP_001317276 (OMIM: 600814,604391) double-strand b ( 707) 4627 685.4  2e-196
XP_006718905 (OMIM: 600814,604391) PREDICTED: doub ( 707) 4627 685.4  2e-196
NP_005581 (OMIM: 600814,604391) double-strand brea ( 680) 3950 587.0  8e-167
XP_005274065 (OMIM: 600814,604391) PREDICTED: doub ( 552) 3584 533.8  7e-151


>>XP_016873261 (OMIM: 600814,604391) PREDICTED: double-s  (708 aa)
 initn: 4644 init1: 4644 opt: 4644  Z-score: 3660.7  bits: 687.9 E(85289): 3.6e-197
Smith-Waterman score: 4644; 100.0% identity (100.0% similar) in 708 aa overlap (1-708:1-708)

               10        20        30        40        50        60
pF1KB9 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB9 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
              610       620       630       640       650       660

              670       680       690       700        
pF1KB9 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
       ::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
              670       680       690       700        

>>NP_005582 (OMIM: 600814,604391) double-strand break re  (708 aa)
 initn: 4644 init1: 4644 opt: 4644  Z-score: 3660.7  bits: 687.9 E(85289): 3.6e-197
Smith-Waterman score: 4644; 100.0% identity (100.0% similar) in 708 aa overlap (1-708:1-708)

               10        20        30        40        50        60
pF1KB9 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB9 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
              610       620       630       640       650       660

              670       680       690       700        
pF1KB9 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
              670       680       690       700        

>>XP_011541139 (OMIM: 600814,604391) PREDICTED: double-s  (708 aa)
 initn: 4644 init1: 4644 opt: 4644  Z-score: 3660.7  bits: 687.9 E(85289): 3.6e-197
Smith-Waterman score: 4644; 100.0% identity (100.0% similar) in 708 aa overlap (1-708:1-708)

               10        20        30        40        50        60
pF1KB9 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB9 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
              610       620       630       640       650       660

              670       680       690       700        
pF1KB9 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
       ::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
              670       680       690       700        

>>NP_001317276 (OMIM: 600814,604391) double-strand break  (707 aa)
 initn: 4625 init1: 3930 opt: 4627  Z-score: 3647.4  bits: 685.4 E(85289): 2e-196
Smith-Waterman score: 4627; 99.9% identity (99.9% similar) in 708 aa overlap (1-708:1-707)

               10        20        30        40        50        60
pF1KB9 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
NP_001 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGR-DTGLE
              550       560       570       580       590          

              610       620       630       640       650       660
pF1KB9 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
     600       610       620       630       640       650         

              670       680       690       700        
pF1KB9 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
     660       670       680       690       700       

>>XP_006718905 (OMIM: 600814,604391) PREDICTED: double-s  (707 aa)
 initn: 4625 init1: 3930 opt: 4627  Z-score: 3647.4  bits: 685.4 E(85289): 2e-196
Smith-Waterman score: 4627; 99.9% identity (99.9% similar) in 708 aa overlap (1-708:1-707)

               10        20        30        40        50        60
pF1KB9 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
XP_006 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGR-DTGLE
              550       560       570       580       590          

              610       620       630       640       650       660
pF1KB9 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
     600       610       620       630       640       650         

              670       680       690       700        
pF1KB9 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
       ::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
     660       670       680       690       700       

>>NP_005581 (OMIM: 600814,604391) double-strand break re  (680 aa)
 initn: 3976 init1: 3935 opt: 3950  Z-score: 3116.0  bits: 587.0 E(85289): 8e-167
Smith-Waterman score: 4415; 96.0% identity (96.0% similar) in 708 aa overlap (1-708:1-680)

               10        20        30        40        50        60
pF1KB9 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::     
NP_005 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRA-----
              550       560       570       580       590          

              610       620       630       640       650       660
pF1KB9 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
                              :::::::::::::::::::::::::::::::::::::
NP_005 -----------------------FKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
                                600       610       620       630  

              670       680       690       700        
pF1KB9 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
            640       650       660       670       680

>>XP_005274065 (OMIM: 600814,604391) PREDICTED: double-s  (552 aa)
 initn: 3584 init1: 3584 opt: 3584  Z-score: 2829.8  bits: 533.8 E(85289): 7e-151
Smith-Waterman score: 3584; 100.0% identity (100.0% similar) in 552 aa overlap (157-708:1-552)

        130       140       150       160       170       180      
pF1KB9 GNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYGLGSIPD
                                     ::::::::::::::::::::::::::::::
XP_005                               MSVEKIDISPVLLQKGSTKIALYGLGSIPD
                                             10        20        30

        190       200       210       220       230       240      
pF1KB9 ERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDLVIWGHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDLVIWGHE
               40        50        60        70        80        90

        250       260       270       280       290       300      
pF1KB9 HECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIPLHTVRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIPLHTVRQ
              100       110       120       130       140       150

        310       320       330       340       350       360      
pF1KB9 FFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEKPLVRLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEKPLVRLR
              160       170       180       190       200       210

        370       380       390       400       410       420      
pF1KB9 VDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITKPSEGTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITKPSEGTT
              220       230       240       250       260       270

        430       440       450       460       470       480      
pF1KB9 LRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEKTQRFLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEKTQRFLK
              280       290       300       310       320       330

        490       500       510       520       530       540      
pF1KB9 ERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAFSADDLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAFSADDLM
              340       350       360       370       380       390

        550       560       570       580       590       600      
pF1KB9 SIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLETSTRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLETSTRSR
              400       410       420       430       440       450

        610       620       630       640       650       660      
pF1KB9 NSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTSKTDQRW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTSKTDQRW
              460       470       480       490       500       510

        670       680       690       700        
pF1KB9 SSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
       ::::::::::::::::::::::::::::::::::::::::::
XP_005 SSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
              520       530       540       550  




708 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:55:49 2016 done: Sat Nov  5 18:55:51 2016
 Total Scan time: 11.800 Total Display time:  0.110

Function used was FASTA [36.3.4 Apr, 2011]
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